Package evaluation of ArgoData on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-25T00:44:39.508 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.77s ################################################################################ # Installation # Installing ArgoData... Resolving package versions... Installed libaec_jll ────────────────── v1.1.3+0 Installed MPICH_jll ─────────────────── v4.3.0+1 Installed IrrationalConstants ───────── v0.2.4 Installed Crayons ───────────────────── v4.1.1 Installed Scratch ───────────────────── v1.2.1 Installed Bootstrap ─────────────────── v2.4.0 Installed Blosc_jll ─────────────────── v1.21.7+0 Installed Adapt ─────────────────────── v4.3.0 Installed LRUCache ──────────────────── v1.6.2 Installed libzip_jll ────────────────── v1.11.3+0 Installed OffsetArrays ──────────────── v1.16.0 Installed XML2_jll ──────────────────── v2.13.6+1 Installed JLD2 ──────────────────────── v0.5.12 Installed Rmath ─────────────────────── v0.8.0 Installed HypergeometricFunctions ───── v0.3.28 Installed PrettyTables ──────────────── v2.4.0 Installed StatsFuns ─────────────────── v1.3.2 Installed JSON ──────────────────────── v0.21.4 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed Preferences ───────────────── v1.4.3 Installed PtrArrays ─────────────────── v1.3.0 Installed TableTraits ───────────────── v1.0.1 Installed LoggingExtras ─────────────── v1.1.0 Installed OpenSSL_jll ───────────────── v3.0.16+0 Installed BitFlags ──────────────────── v0.1.9 Installed Hwloc_jll ─────────────────── v2.12.0+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed DataDeps ──────────────────── v0.7.13 Installed SpecialFunctions ──────────── v2.5.0 Installed SimpleBufferStream ────────── v1.2.0 Installed Parsers ───────────────────── v2.8.1 Installed Tables ────────────────────── v1.12.0 Installed XZ_jll ────────────────────── v5.6.4+1 Installed Unitful ───────────────────── v1.22.0 Installed PDMats ────────────────────── v0.11.32 Installed Dataverse ─────────────────── v0.2.7 Installed SentinelArrays ────────────── v1.4.8 Installed DataAPI ───────────────────── v1.16.0 Installed ArgoData ──────────────────── v0.2.0 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed OpenMPI_jll ───────────────── v5.0.7+1 Installed PooledArrays ──────────────── v1.4.3 Installed StringEncodings ───────────── v0.3.7 Installed ZipFile ───────────────────── v0.10.1 Installed ConcurrentUtilities ───────── v2.5.0 Installed InlineStrings ─────────────── v1.4.3 Installed StaticArrays ──────────────── v1.9.13 Installed JLLWrappers ───────────────── v1.7.0 Installed StaticArraysCore ──────────── v1.4.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed PrecompileTools ───────────── v1.2.1 Installed NearestNeighbors ──────────── v0.4.21 Installed URIs ──────────────────────── v1.5.1 Installed DataValueInterfaces ───────── v1.0.0 Installed OrderedCollections ────────── v1.8.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed WorkerUtilities ───────────── v1.6.1 Installed URIParser ─────────────────── v0.4.1 Installed TranscodingStreams ────────── v0.11.3 Installed NCDatasets ────────────────── v0.14.0 Installed OpenSSL ───────────────────── v1.4.3 Installed MeshArrays ────────────────── v0.3.20 Installed InvertedIndices ───────────── v1.3.1 Installed ChainRulesCore ────────────── v1.25.1 Installed HTTP ──────────────────────── v1.10.15 Installed FilePathsBase ─────────────── v0.9.24 Installed QuadGK ────────────────────── v2.11.2 Installed FillArrays ────────────────── v1.13.0 Installed MPIPreferences ────────────── v0.1.11 Installed Interpolations ────────────── v0.15.1 Installed CatViews ──────────────────── v1.0.0 Installed FileIO ────────────────────── v1.17.0 Installed Reexport ──────────────────── v1.2.2 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed MPItrampoline_jll ─────────── v5.5.3+0 Installed Statistics ────────────────── v1.11.1 Installed MbedTLS ───────────────────── v1.1.9 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed AxisAlgorithms ────────────── v1.1.0 Installed WeakRefStrings ────────────── v1.4.2 Installed FTPClient ─────────────────── v1.2.1 Installed Ratios ────────────────────── v0.4.5 Installed DataFrames ────────────────── v1.7.0 Installed StatsModels ───────────────── v0.7.4 Installed ShiftedArrays ─────────────── v2.0.0 Installed CommonDataModel ───────────── v0.3.8 Installed AliasTables ───────────────── v1.1.3 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed DataStructures ────────────── v0.18.22 Installed CSV ───────────────────────── v0.10.15 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed NetCDF_jll ────────────────── v401.900.300+0 Installed StatsAPI ──────────────────── v1.7.0 Installed CFTime ────────────────────── v0.1.4 Installed Compat ────────────────────── v4.16.0 Installed MacroTools ────────────────── v0.5.15 Installed Distributions ─────────────── v0.25.118 Installed Distances ─────────────────── v0.10.12 Installed Glob ──────────────────────── v1.3.1 Installed CodecZlib ─────────────────── v0.7.8 Installed WoodburyMatrices ──────────── v1.0.0 Installed StringManipulation ────────── v0.4.1 Installed SortingAlgorithms ─────────── v1.2.1 Installed StatsBase ─────────────────── v0.34.4 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed Missings ──────────────────── v1.2.0 Installed ExceptionUnwrapping ───────── v0.1.11 Installed DiskArrays ────────────────── v0.3.23 Installed DocStringExtensions ───────── v0.9.3 Installed YAML ──────────────────────── v0.4.13 Installing 16 artifacts Installed artifact Blosc 44.2 KiB Installed artifact Lz4 239.7 KiB Installed artifact libzip 177.6 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Zstd 646.0 KiB Installed artifact libaec 96.2 KiB Installed artifact Rmath 121.9 KiB Installed artifact NetCDF 936.0 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact XZ 1.4 MiB Installed artifact Libiconv 1.9 MiB Installed artifact MPICH 3.3 MiB Installed artifact XML2 2.5 MiB Installed artifact OpenSSL 3.0 MiB Installed artifact Hwloc 3.5 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.12/Project.toml` [9eb831cf] + ArgoData v0.2.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [9eb831cf] + ArgoData v0.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [d1d4a3ce] + BitFlags v0.1.9 [e28b5b4c] + Bootstrap v2.4.0 [179af706] + CFTime v0.1.4 [336ed68f] + CSV v0.10.15 [81a5f4ea] + CatViews v1.0.0 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.3.8 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [9c0b9be8] + Dataverse v0.2.7 ⌅ [3c3547ce] + DiskArrays v0.3.23 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [460bff9d] + ExceptionUnwrapping v0.1.11 [01fcc997] + FTPClient v1.2.1 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [c27321d9] + Glob v1.3.1 [cd3eb016] + HTTP v1.10.15 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [a98d9a8b] + Interpolations v0.15.1 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.12 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [739be429] + MbedTLS v1.1.9 [cb8c808f] + MeshArrays v0.3.20 [e1d29d7a] + Missings v1.2.0 ⌃ [85f8d34a] + NCDatasets v0.14.0 [b8a86587] + NearestNeighbors v0.4.21 [6fe1bfb0] + OffsetArrays v1.16.0 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [30578b45] + URIParser v0.4.1 [5c2747f8] + URIs v1.5.1 [1986cc42] + Unitful v1.22.0 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.13 [a5390f91] + ZipFile v0.10.1 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.7+1 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [14a3606d] + MozillaCACerts_jll v2024.11.26 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 [8e850ede] + nghttp2_jll v1.63.0+1 [3f19e933] + p7zip_jll v17.5.0+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 22.26s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6274.9 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 176 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 #626 at ./asyncevent.jl:311 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d56e0030780 Total snapshots: 264. Utilization: 0% ╎264 @Base/asyncevent.jl:311 (::Base.var"#626#627"{FileWatching.Pidfile.var… ╎ 264 @Base/asyncevent.jl:145 _trywait(t::Timer) ╎ 264 @Base/condition.jl:136 wait ╎ 264 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.S… ╎ 264 @Base/task.jl:1199 wait() 263╎ 264 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronize… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 task_done_hook at ./task.jl:839 jfptr_task_done_hook_97764.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] jl_finish_task at /source/src/task.c:345 start_task at /source/src/task.c:1292 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1353 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000070d97011c340 Total snapshots: 389. Utilization: 0% ╎389 @Base/task.jl:839 task_done_hook(t::Task) ╎ 389 @Base/task.jl:1199 wait() 388╎ 389 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:152 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 [176] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:37 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 poptask at ./task.jl:1187 wait at ./task.jl:1199 wait at ./task.jl:1199 #wait#551 at ./condition.jl:141 #wait#551 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:145 _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:326 #626 at ./asyncevent.jl:311 jfptr_YY.626_98745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 #start_profile_listener##0 at ./Base.jl:346 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 18400349 (Pool: 18396278; Big: 4071); GC: 67 jfptr_YY.start_profile_listenerYY.YY.0_111230.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3359 [inlined] ijl_apply_generic at /source/src/gf.c:3547 jl_apply at /source/src/julia.h:2244 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 17379541 (Pool: 17377041; Big: 2500); GC: 22 PkgEval terminated after 2733.82s: test duration exceeded the time limit