Package evaluation of ArDCA on Julia 1.12.0-DEV.1805 (a080deafdd*) started at 2025-03-24T20:39:40.621 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.29s ################################################################################ # Installation # Installing ArDCA... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [fc7e833f] + ArDCA v0.6.6 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [fc7e833f] + ArDCA v0.6.6 [4fba245c] + ArrayInterface v7.18.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [e41cd558] + DCAUtils v1.1.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [f86d3d12] + ExtractMacro v1.0.0 [a0c94c4b] + FastaIO v1.1.0 [1a297f60] + FillArrays v1.13.0 [92fee26a] + GZip v0.6.2 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.171 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [76087f3c] + NLopt v1.1.3 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [8290d209] + ThreadingUtilities v0.5.2 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [dc6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] + LibGit2_jll v1.8.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+1 [4536629a] + OpenBLAS_jll v0.3.28+3 [05823500] + OpenLibm_jll v0.8.1+3 [bea87d4a] + SuiteSparse_jll v7.8.0+1 [83775a58] + Zlib_jll v1.3.1+1 [8e850b90] + libblastrampoline_jll v5.11.2+0 Installation completed after 4.44s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 81.88s ################################################################################ # Testing # Testing ArDCA Status `/tmp/jl_F8y8rA/Project.toml` [fc7e833f] ArDCA v0.6.6 [e41cd558] DCAUtils v1.1.0 [31c24e10] Distributions v0.25.118 [f86d3d12] ExtractMacro v1.0.0 [bdcacae8] LoopVectorization v0.12.171 [76087f3c] NLopt v1.1.3 [aea7be01] PrecompileTools v1.2.1 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_F8y8rA/Manifest.toml` [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [fc7e833f] ArDCA v0.6.6 [4fba245c] ArrayInterface v7.18.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [fb6a15b2] CloseOpenIntervals v0.1.13 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [adafc99b] CpuId v0.3.1 [e41cd558] DCAUtils v1.1.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [f86d3d12] ExtractMacro v1.0.0 [a0c94c4b] FastaIO v1.1.0 [1a297f60] FillArrays v1.13.0 [92fee26a] GZip v0.6.2 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.171 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [76087f3c] NLopt v1.1.3 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [8290d209] ThreadingUtilities v0.5.2 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.71 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [dc6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.2.0+0 [e37daf67] LibGit2_jll v1.8.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [4536629a] OpenBLAS_jll v0.3.28+3 [05823500] OpenLibm_jll v0.8.1+3 [bea87d4a] SuiteSparse_jll v7.8.0+1 [83775a58] Zlib_jll v1.3.1+1 [8e850b90] libblastrampoline_jll v5.11.2+0 Testing Running tests... Running tests: WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in softmax!(Array{Float64, 1}, Array{Float64, 1}) at /home/pkgeval/.julia/packages/ArDCA/Un1u6/src/utils.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _outputarnet!(Any, Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/ArDCA/Un1u6/src/types.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _turbo_!(Base.Val{var"#UNROLL#"}, Base.Val{var"#OPS#"}, Base.Val{var"#ARF#"}, Base.Val{var"#AM#"}, Base.Val{var"#LPSYM#"}, Base.Val{Tuple{var"#LB#", var"#V#"}}, Vararg{Any, var"#num#vargs#"}) where {var"#UNROLL#", var"#OPS#", var"#ARF#", var"#AM#", var"#LPSYM#", var"#LB#", var"#V#", var"#num#vargs#"} at /home/pkgeval/.julia/packages/LoopVectorization/tIJUA/src/reconstruct_loopset.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in pslikeandgrad!(Array{Float64, 1}, Array{Float64, 1}, Int64, ArDCA.ArVar{Ti} where Ti<:Integer) at /home/pkgeval/.julia/packages/ArDCA/Un1u6/src/ar.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in l2norm_asym(Array{Float64, 1}, ArDCA.ArVar{Ti} where Ti<:Integer) at /home/pkgeval/.julia/packages/ArDCA/Un1u6/src/ar.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in fillvecene!(Array{Float64, 1}, Array{Float64, 1}, Int64, AbstractArray{Int64, 1}, Int64, Int64) at /home/pkgeval/.julia/packages/ArDCA/Un1u6/src/ar.jl testing N=2 q=2 permorder=NATURAL Δ=-187.4275591007593 [dB] WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in (::ArDCA.var"#siteloglikelihood_static##6#siteloglikelihood_static##7"{ll, site, q, W, Z, var"#487#range"})(Any, ArDCA.var"#siteloglikelihood_static##4#siteloglikelihood_static##5"{var"#488#threadsfor_fun#18"} where var"#488#threadsfor_fun#18", Any) at threadingconstructs.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in gesp(LayoutPointers.AbstractStridedPointer{T, N, C, B, R, X, O} where O<:Tuple{Vararg{Union{Int16, Int32, Int64, Int8, UInt16, UInt32, UInt64, UInt8, Static.StaticInt{N} where N}, N}} where X<:Tuple{Vararg{Union{Int16, Int32, Int64, Int8, UInt16, UInt32, UInt64, UInt8, Static.StaticInt{N} where N}, N}} where R where B where C where N where T, Tuple{Vararg{Union{Int16, Int32, Int64, Int8, UInt16, UInt32, UInt64, UInt8, Static.StaticInt{N} where N, VectorizationBase.LazyMulAdd{var"#s86", var"#s85", var"#s84"} where var"#s84"<:Union{Int16, Int32, Int64, Int8, UInt16, UInt32, UInt64, UInt8, Static.StaticInt{N} where N} where var"#s85" where var"#s86"}}}) at /home/pkgeval/.julia/packages/VectorizationBase/wHnQd/src/llvm_intrin/memory_addr.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _ll(Any, Any, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/ArDCA/Un1u6/src/utils.jl testing N=2 q=2 permorder=RANDOM Δ=-173.54831286133688 [dB] testing N=2 q=2 permorder=ENTROPIC Δ=-185.3715448421201 [dB] testing N=2 q=2 permorder=REV_ENTROPIC Δ=-177.12570087569657 [dB] testing N=3 q=2 permorder=NATURAL Δ=-171.63147733641577 [dB] testing N=3 q=2 permorder=RANDOM Δ=-192.9767984424393 [dB] testing N=3 q=2 permorder=ENTROPIC Δ=-181.04683222686933 [dB] testing N=3 q=2 permorder=REV_ENTROPIC Δ=-168.00112376817611 [dB] testing N=4 q=2 permorder=NATURAL Δ=-116.14289761985374 [dB] testing N=4 q=2 permorder=RANDOM Δ=-71.73513538260573 [dB] testing N=4 q=2 permorder=ENTROPIC Δ=-121.77624060869185 [dB] testing N=4 q=2 permorder=REV_ENTROPIC Δ=-89.12357856633636 [dB] testing N=5 q=2 permorder=NATURAL Δ=-92.7888200463228 [dB] testing N=5 q=2 permorder=RANDOM Δ=-94.19147280685289 [dB] testing N=5 q=2 permorder=ENTROPIC Δ=-90.39607183826567 [dB] testing N=5 q=2 permorder=REV_ENTROPIC Δ=-79.93798209197267 [dB] testing N=2 q=3 permorder=NATURAL Δ=-176.8801577908357 [dB] testing N=2 q=3 permorder=RANDOM Δ=-174.34237032937642 [dB] testing N=2 q=3 permorder=ENTROPIC Δ=-174.66363723816005 [dB] testing N=2 q=3 permorder=REV_ENTROPIC Δ=-201.70860406262386 [dB] testing N=3 q=3 permorder=NATURAL Δ=-181.0429475624003 [dB] testing N=3 q=3 permorder=RANDOM Δ=-173.30241419000885 [dB] testing N=3 q=3 permorder=ENTROPIC Δ=-176.73523831341637 [dB] testing N=3 q=3 permorder=REV_ENTROPIC Δ=-183.14065394044354 [dB] testing N=4 q=3 permorder=NATURAL Δ=-90.3774404619534 [dB] testing N=4 q=3 permorder=RANDOM Δ=-83.55217568597328 [dB] testing N=4 q=3 permorder=ENTROPIC Δ=-88.5007719161363 [dB] testing N=4 q=3 permorder=REV_ENTROPIC Δ=-75.0711734458515 [dB] testing N=5 q=3 permorder=NATURAL Δ=-72.74636428559158 [dB] testing N=5 q=3 permorder=RANDOM Δ=-81.6340990119641 [dB] testing N=5 q=3 permorder=ENTROPIC Δ=-77.50791150991874 [dB] testing N=5 q=3 permorder=REV_ENTROPIC Δ=-71.48090753445726 [dB] testing N=2 q=4 permorder=NATURAL Δ=-177.7753462534328 [dB] testing N=2 q=4 permorder=RANDOM Δ=-170.822406158751 [dB] testing N=2 q=4 permorder=ENTROPIC Δ=-184.26226307685351 [dB] testing N=2 q=4 permorder=REV_ENTROPIC Δ=-174.02215550611115 [dB] testing N=3 q=4 permorder=NATURAL Δ=-178.19805986931385 [dB] testing N=3 q=4 permorder=RANDOM Δ=-178.5168868414135 [dB] testing N=3 q=4 permorder=ENTROPIC Δ=-180.8153965697697 [dB] testing N=3 q=4 permorder=REV_ENTROPIC Δ=-174.1334009457898 [dB] testing N=4 q=4 permorder=NATURAL Δ=-81.86484854856815 [dB] testing N=4 q=4 permorder=RANDOM Δ=-93.76227809108526 [dB] testing N=4 q=4 permorder=ENTROPIC Δ=-79.8187397699227 [dB] testing N=4 q=4 permorder=REV_ENTROPIC Δ=-94.48009882484686 [dB] testing N=5 q=4 permorder=NATURAL Δ=-93.00254167775907 [dB] testing N=5 q=4 permorder=RANDOM Δ=-85.78720219112759 [dB] testing N=5 q=4 permorder=ENTROPIC Δ=-89.34531991640756 [dB] testing N=5 q=4 permorder=REV_ENTROPIC Δ=-89.84063511898862 [dB] All TestDCA passed! Potentially stale exports: none Testing ArDCA tests passed Testing completed after 100.66s PkgEval succeeded after 223.58s