Package evaluation to test Stheno on Julia 1.14.0-DEV.71 (9f595ebbf8*) started at 2025-11-14T11:19:14.449 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.55s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.66 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 9686.6 ms ✓ KernelFunctions 4617.0 ms ✓ BlockArrays 3924.2 ms ✓ Distributions → DistributionsTestExt 5920.4 ms ✓ AbstractGPs 7489.1 ms ✓ Stheno 5 dependencies successfully precompiled in 32 seconds. 76 already precompiled. Precompilation completed after 42.34s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_WFinwg/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WFinwg/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.15.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.3.0 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.66 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/Ms56q/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#141` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m16.7s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1166s / 99.2% 36.5GiB / 99.4% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 749s 64.8% 749s 24.4GiB 67.1% 24.4GiB addition 1 403s 34.8% 403s 13.1GiB 36.0% 13.1GiB Standardised Tests (correlated sum) 1 224s 19.4% 224s 6.76GiB 18.6% 6.76GiB adj_ad 9 26.6s 2.3% 2.95s 1.23GiB 3.4% 139MiB adj_fd 9 9.46s 0.8% 1.05s 350MiB 0.9% 38.9MiB Standardised Tests (independent sum) 1 132s 11.5% 132s 5.82GiB 16.0% 5.82GiB adj_ad 9 25.2s 2.2% 2.80s 1.56GiB 4.3% 177MiB adj_fd 9 10.4s 0.9% 1.16s 366MiB 1.0% 40.7MiB Correlated GPs 1 43.1s 3.7% 43.1s 433MiB 1.2% 433MiB Consistency Tests 1 18.4s 1.6% 18.4s 174MiB 0.5% 174MiB Verify mean / kernel numerically 1 2.85s 0.2% 2.85s 54.9MiB 0.1% 54.9MiB Consistency Tests 1 1.48s 0.1% 1.48s 16.3MiB 0.0% 16.3MiB product 1 164s 14.2% 164s 5.30GiB 14.6% 5.30GiB multiply by function 1 94.7s 8.2% 94.7s 2.86GiB 7.9% 2.86GiB Diff Tests 1 53.4s 4.6% 53.4s 2.13GiB 5.9% 2.13GiB adj_ad 9 21.4s 1.8% 2.37s 1.09GiB 3.0% 124MiB adj_fd 9 6.68s 0.6% 742ms 214MiB 0.6% 23.8MiB Consistency Tests 1 6.30s 0.5% 6.30s 143MiB 0.4% 143MiB multiply by constant 1 69.7s 6.0% 69.7s 2.44GiB 6.7% 2.44GiB Diff Tests 1 53.5s 4.6% 53.5s 2.37GiB 6.5% 2.37GiB adj_ad 9 17.1s 1.5% 1.90s 1.00GiB 2.8% 114MiB adj_fd 9 11.3s 1.0% 1.26s 356MiB 1.0% 39.5MiB Consistency Tests 1 3.95s 0.3% 3.95s 23.9MiB 0.1% 23.9MiB GP mul errors 1 12.2ms 0.0% 12.2ms 50.0KiB 0.0% 50.0KiB compose 1 86.4s 7.5% 86.4s 3.12GiB 8.6% 3.12GiB general 1 53.4s 4.6% 53.4s 2.06GiB 5.7% 2.06GiB Diff Tests 1 47.8s 4.1% 47.8s 2.00GiB 5.5% 2.00GiB adj_ad 9 15.2s 1.3% 1.69s 942MiB 2.5% 105MiB adj_fd 9 6.72s 0.6% 747ms 230MiB 0.6% 25.5MiB Consistency Tests 1 4.15s 0.4% 4.15s 46.0MiB 0.1% 46.0MiB Stretch 1 26.9s 2.3% 26.9s 942MiB 2.5% 942MiB scalar stretch 1 26.2s 2.3% 26.2s 924MiB 2.5% 924MiB scalar input 1 25.3s 2.2% 25.3s 918MiB 2.5% 918MiB adj_fd 9 9.34s 0.8% 1.04s 316MiB 0.8% 35.1MiB adj_ad 9 3.37s 0.3% 374ms 184MiB 0.5% 20.5MiB vector input 1 794ms 0.1% 794ms 4.54MiB 0.0% 4.54MiB Vector stretch 1 641ms 0.1% 641ms 13.9MiB 0.0% 13.9MiB Matrix stretch 1 132ms 0.0% 132ms 4.03MiB 0.0% 4.03MiB Shift 1 3.15s 0.3% 3.15s 55.4MiB 0.1% 55.4MiB Shift{Vector{Float64}} 1 1.71s 0.1% 1.71s 20.3MiB 0.1% 20.3MiB Shift{Float64} 1 1.44s 0.1% 1.44s 35.0MiB 0.1% 35.0MiB Select 1 1.68s 0.1% 1.68s 42.7MiB 0.1% 42.7MiB evaluation 1 817ms 0.1% 817ms 27.7MiB 0.1% 27.7MiB idx isa Vector 1 531ms 0.0% 531ms 10.7MiB 0.0% 10.7MiB idx isa Integer 1 329ms 0.0% 329ms 4.36MiB 0.0% 4.36MiB Periodic 1 1.22s 0.1% 1.22s 44.3MiB 0.1% 44.3MiB cross 1 33.3s 2.9% 33.3s 1.81GiB 5.0% 1.81GiB block arrays 1 18.2s 1.6% 18.2s 1.03GiB 2.8% 1.03GiB Stheno._collect ∘ _mortar 1 15.3s 1.3% 15.3s 891MiB 2.4% 891MiB BlockMatrix 1 8.40s 0.7% 8.40s 490MiB 1.3% 490MiB adj_fd 1 1.62s 0.1% 1.62s 138MiB 0.4% 138MiB adj_ad 1 62.9ms 0.0% 62.9ms 2.90MiB 0.0% 2.90MiB BlockVector 1 6.89s 0.6% 6.89s 402MiB 1.1% 402MiB adj_fd 1 766ms 0.1% 766ms 18.9MiB 0.1% 18.9MiB adj_ad 1 236ms 0.0% 236ms 21.1MiB 0.1% 21.1MiB fdm stuff 1 2.94s 0.3% 2.94s 159MiB 0.4% 159MiB Correctness tests 1 9.18s 0.8% 9.18s 571MiB 1.5% 571MiB Standardised Tests 1 5.87s 0.5% 5.87s 228MiB 0.6% 228MiB gp 1 191s 16.6% 191s 6.37GiB 17.6% 6.37GiB sparse gp 1 21.0s 1.8% 21.0s 539MiB 1.4% 539MiB SparseFiniteGP inference 1 15.1s 1.3% 15.1s 349MiB 0.9% 349MiB SparseFiniteGP methods 1 5.47s 0.5% 5.47s 183MiB 0.5% 183MiB SparseFiniteGP Constructors 1 418ms 0.0% 418ms 5.20MiB 0.0% 5.20MiB adj_ad 2 19.2s 1.7% 9.62s 1.10GiB 3.0% 562MiB gp 1 18.6s 1.6% 18.6s 577MiB 1.6% 577MiB GP 1 18.3s 1.6% 18.3s 573MiB 1.5% 573MiB independent GPs 1 313ms 0.0% 313ms 3.49MiB 0.0% 3.49MiB wrapped AbstractGP 1 12.6ms 0.0% 12.6ms 375KiB 0.0% 375KiB adj_fd 2 4.72s 0.4% 2.36s 175MiB 0.5% 87.5MiB derived_gp 1 180μs 0.0% 180μs 2.08KiB 0.0% 2.08KiB gaussian_process_probabilistic_programme 1 141s 12.2% 141s 2.96GiB 8.2% 2.96GiB Zygote 1 28.5s 2.5% 28.5s 1.23GiB 3.4% 1.23GiB nested gppp 1 14.3s 1.2% 14.3s 102MiB 0.3% 102MiB External Consistency 1 14.3s 1.2% 14.3s 142MiB 0.4% 142MiB split 1 613ms 0.1% 613ms 16.5MiB 0.0% 16.5MiB gppp macro 1 54.9ms 0.0% 54.9ms 756KiB 0.0% 756KiB doctests 1 68.5s 5.9% 68.5s 2.29GiB 6.3% 2.29GiB BlockData 1 6.51s 0.6% 6.51s 307MiB 0.8% 307MiB vcat(::GPPPInput...) 1 1.41s 0.1% 1.41s 107MiB 0.3% 107MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1311.67s PkgEval succeeded after 1386.92s