Package evaluation to test PhyNEST on Julia 1.14.0-DEV.71 (9f595ebbf8*) started at 2025-11-14T17:11:11.312 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.56s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.2+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed InlineStrings ─────────────── v1.4.5 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed SentinelArrays ────────────── v1.4.8 Installed Functors ──────────────────── v0.3.0 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed FileIO ────────────────────── v1.17.1 Installed OrderedCollections ────────── v1.8.1 Installed Optim ─────────────────────── v1.13.2 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed libsass_jll ───────────────── v3.6.6+0 Installed Tables ────────────────────── v1.12.1 Installed QuadGK ────────────────────── v2.11.2 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Graphics ──────────────────── v1.1.3 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed EnumX ─────────────────────── v1.0.5 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Missings ──────────────────── v1.2.0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Reexport ──────────────────── v1.2.2 Installed NLSolversBase ─────────────── v7.10.0 Installed Preferences ───────────────── v1.5.0 Installed TableTraits ───────────────── v1.0.1 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed UnPack ────────────────────── v1.0.2 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed ADTypes ───────────────────── v1.18.0 Installed DataStructures ────────────── v0.18.22 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.15.0 Installed Sass ──────────────────────── v0.2.0 Installed AbstractTrees ─────────────── v0.4.5 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed DelimitedFiles ────────────── v1.9.1 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXdamage_jll ───────── v1.1.6+0 Installed MethodAnalysis ────────────── v1.0.0 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed RoundingIntegers ──────────── v1.1.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed Cairo ─────────────────────── v1.1.1 Installed CommonSubexpressions ──────── v0.3.1 Installed ArrayInterface ────────────── v7.22.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed IrrationalConstants ───────── v0.2.6 Installed BitFlags ──────────────────── v0.1.9 Installed IOCapture ─────────────────── v0.2.5 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed PooledArrays ──────────────── v1.4.3 Installed Scratch ───────────────────── v1.3.0 Installed PDMats ────────────────────── v0.11.35 Installed BenchmarkTools ────────────── v1.6.3 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed Graphene_jll ──────────────── v1.10.8+0 Installed Setfield ──────────────────── v1.1.2 Installed FASTX ─────────────────────── v2.1.7 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed ForwardDiff ───────────────── v1.3.0 Installed BioSequences ──────────────── v3.5.0 Installed StatsModels ───────────────── v0.6.33 Installed StringViews ───────────────── v1.3.5 Installed DifferentiationInterface ──── v0.7.11 Installed AliasTables ───────────────── v1.1.3 Installed MathOptInterface ──────────── v1.46.0 Installed Combinatorics ─────────────── v1.0.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed DataAPI ───────────────────── v1.16.0 Installed SIMD ──────────────────────── v3.7.2 Installed ShiftedArrays ─────────────── v2.0.0 Installed InvertedIndices ───────────── v1.3.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Wayland_jll ───────────────── v1.24.0+0 Installed GtkObservables ────────────── v2.2.1 Installed StaticArraysCore ──────────── v1.4.4 Installed Twiddle ───────────────────── v1.1.2 Installed StaticArrays ──────────────── v1.9.15 Installed Colors ────────────────────── v0.13.1 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Documenter ────────────────── v0.27.25 Installed ColorTypes ────────────────── v0.12.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Glib_jll ──────────────────── v2.86.0+0 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Git_jll ───────────────────── v2.51.3+0 Installed DiffRules ─────────────────── v1.15.1 Installed Parsers ───────────────────── v2.8.3 Installed JSON ──────────────────────── v0.21.4 Installed Rmath ─────────────────────── v0.9.0 Installed PrettyTables ──────────────── v3.1.0 Installed FiniteDiff ────────────────── v2.29.0 Installed Distributions ─────────────── v0.25.122 Installed DocumenterTools ───────────── v0.1.21 Installed PhyloNetworks ─────────────── v0.15.3 Installed BioGenerics ───────────────── v0.1.5 Installed StatsFuns ─────────────────── v1.5.2 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.1+0 Installed DataFrames ────────────────── v1.8.1 Installed MutableArithmetics ────────── v1.6.7 Installed StructTypes ───────────────── v1.11.0 Installed Pango_jll ─────────────────── v1.57.0+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed FilePathsBase ─────────────── v0.9.24 Installed NLopt ─────────────────────── v0.6.5 Installed Adapt ─────────────────────── v4.4.0 Installed GLM ───────────────────────── v1.8.3 Installed Libmount_jll ──────────────── v2.41.2+0 Installed HypergeometricFunctions ───── v0.3.28 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed TranscodingStreams ────────── v0.11.3 Installed ConstructionBase ──────────── v1.6.0 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Suppressor ────────────────── v0.2.8 Installed FlameGraphs ───────────────── v1.1.0 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.7.1 Installed PositiveFactorizations ────── v0.2.4 Installed PrecompileTools ───────────── v1.3.3 Installed xkbcommon_jll ─────────────── v1.9.2+0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed CodecBzip2 ────────────────── v0.8.5 Installed BioSymbols ────────────────── v5.2.0 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed JSON3 ─────────────────────── v1.14.3 Installed ProfileView ───────────────── v1.10.2 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed Parameters ────────────────── v0.12.3 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed SpecialFunctions ──────────── v2.6.1 Installed IntervalSets ──────────────── v0.7.12 Installed PhyNEST ───────────────────── v0.1.12 Installed FixedPointNumbers ─────────── v0.8.5 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Gumbo ─────────────────────── v0.8.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed Automa ────────────────────── v1.1.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed IndirectArrays ────────────── v1.0.0 Installed LineSearches ──────────────── v7.4.0 Installed Gtk4 ──────────────────────── v0.7.11 Installed CSV ───────────────────────── v0.10.15 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed ANSIColoredPrinters ───────── v0.0.1 Installed MathProgBase ──────────────── v0.7.8 Installing 60 artifacts Installed artifact FriBidi 78.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact Libffi 44.2 KiB Installed artifact Libiconv 1.9 MiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact Libepoxy 504.4 KiB Installed artifact libpng 328.4 KiB Installed artifact Graphene 223.2 KiB Installed artifact Pixman 372.2 KiB Installed artifact Wayland 390.6 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Gumbo 703.8 KiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact iso_codes 7.5 MiB Installed artifact Glib 7.7 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact LERC 272.9 KiB Installed artifact Expat 283.3 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Rmath 121.9 KiB Installed artifact XML2 2.5 MiB Installed artifact Pango 2.0 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Cairo 2.2 MiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact Libmount 6.5 MiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact libsass 8.9 MiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Bzip2 503.5 KiB Installed artifact LZO 208.9 KiB Installed artifact FreeType2 1.5 MiB Installed artifact GTK4 14.1 MiB Installed artifact Librsvg 9.3 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Git 48.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.11 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.5 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.0 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.11 [8710efd8] + GtkObservables v2.2.1 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.12 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.46.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [c46f51b8] + ProfileView v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [7746bdde] + Glib_jll v2.86.0+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.50+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 30.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4769.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4728.7 ms ✓ MacroTools 1700.1 ms ✓ InlineStrings 814.6 ms ✓ Reexport 1183.8 ms ✓ ConstructionBase 2226.9 ms ✓ IrrationalConstants 789.9 ms ✓ DataValueInterfaces 848.8 ms ✓ StatsAPI 1061.3 ms ✓ Observables 865.4 ms ✓ Twiddle 1049.9 ms ✓ IntervalSets 871.9 ms ✓ CEnum 1018.2 ms ✓ Functors 2216.6 ms ✓ Combinatorics 1099.8 ms ✓ StringViews 1279.0 ms ✓ TranscodingStreams 878.1 ms ✓ LaTeXStrings 1128.6 ms ✓ Statistics 964.0 ms ✓ StaticArraysCore 798.6 ms ✓ Suppressor 832.1 ms ✓ PtrArrays 1028.9 ms ✓ ANSIColoredPrinters 975.4 ms ✓ PositiveFactorizations 890.6 ms ✓ DataAPI 862.8 ms ✓ InvertedIndices 885.3 ms ✓ BitFlags 893.9 ms ✓ ShiftedArrays 1135.7 ms ✓ AbstractTrees 884.2 ms ✓ EnumX 1043.2 ms ✓ WorkerUtilities 2433.8 ms ✓ FillArrays 865.0 ms ✓ IndirectArrays 866.3 ms ✓ RoundingIntegers 820.9 ms ✓ UnPack 1299.1 ms ✓ OrderedCollections 1456.3 ms ✓ ADTypes 1141.3 ms ✓ DocStringExtensions 809.7 ms ✓ IteratorInterfaceExtensions 2259.6 ms ✓ Crayons 892.3 ms ✓ IOCapture 1026.5 ms ✓ DelimitedFiles 1361.5 ms ✓ NaNMath 1787.6 ms ✓ Requires 1662.8 ms ✓ SuiteSparse 2227.5 ms ✓ MathProgBase 948.5 ms ✓ Scratch 3213.5 ms ✓ SentinelArrays 1670.5 ms ✓ StructTypes 1237.2 ms ✓ Compat 1240.8 ms ✓ Preferences 12930.4 ms ✓ MutableArithmetics 1857.3 ms ✓ CommonSubexpressions 842.4 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 808.6 ms ✓ IntervalSets → IntervalSetsRandomExt 822.3 ms ✓ IntervalSets → IntervalSetsPrintfExt 786.5 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 959.0 ms ✓ BioGenerics 999.2 ms ✓ CodecZlib 1298.9 ms ✓ Statistics → SparseArraysExt 4194.5 ms ✓ FixedPointNumbers 800.6 ms ✓ IntervalSets → IntervalSetsStatisticsExt 890.7 ms ✓ DiffResults 1002.4 ms ✓ AliasTables 997.8 ms ✓ Missings 1059.5 ms ✓ PooledArrays 888.6 ms ✓ LeftChildRightSiblingTrees 1119.8 ms ✓ MethodAnalysis 1494.0 ms ✓ FillArrays → FillArraysSparseArraysExt 985.3 ms ✓ FillArrays → FillArraysStatisticsExt 991.4 ms ✓ Parameters 785.4 ms ✓ ADTypes → ADTypesConstructionBaseExt 1954.9 ms ✓ DifferentiationInterface 1772.3 ms ✓ LogExpFunctions 777.7 ms ✓ TableTraits 955.6 ms ✓ Adapt 9533.3 ms ✓ FileIO 1812.4 ms ✓ PDMats 869.2 ms ✓ Compat → CompatLinearAlgebraExt 929.5 ms ✓ PrecompileTools 1255.7 ms ✓ JLLWrappers 3232.6 ms ✓ Setfield 2825.4 ms ✓ ColorTypes 1347.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1788.0 ms ✓ Tables 1194.1 ms ✓ ArrayInterface 1266.0 ms ✓ Adapt → AdaptSparseArraysExt 1486.6 ms ✓ FillArrays → FillArraysPDMatsExt 2234.2 ms ✓ FilePathsBase 4106.1 ms ✓ DataStructures 2782.4 ms ✓ BioSymbols 3263.2 ms ✓ StringManipulation 18911.2 ms ✓ SIMD 14757.2 ms ✓ StaticArrays 18714.3 ms ✓ Parsers 1450.6 ms ✓ Libffi_jll 1452.7 ms ✓ LZO_jll 1442.6 ms ✓ Bzip2_jll 1496.5 ms ✓ XZ_jll 1463.4 ms ✓ NLopt_jll 1445.9 ms ✓ Rmath_jll 1481.4 ms ✓ OpenSpecFun_jll 1242.1 ms ✓ Xorg_xtrans_jll 1474.3 ms ✓ libpng_jll 1467.8 ms ✓ iso_codes_jll 1207.0 ms ✓ EpollShim_jll 1273.5 ms ✓ Wayland_protocols_jll 1449.4 ms ✓ Libmount_jll 1447.9 ms ✓ Libuuid_jll 1459.2 ms ✓ FriBidi_jll 1481.2 ms ✓ LERC_jll 1462.6 ms ✓ Git_LFS_jll 1495.3 ms ✓ libsass_jll 1453.5 ms ✓ Gumbo_jll 1493.7 ms ✓ Xorg_libXau_jll 1561.7 ms ✓ OpenSSH_jll 1451.5 ms ✓ hicolor_icon_theme_jll 1461.3 ms ✓ Graphite2_jll 1509.5 ms ✓ LLVMOpenMP_jll 1507.2 ms ✓ Libiconv_jll 1477.4 ms ✓ Xorg_libXdmcp_jll 1563.0 ms ✓ Expat_jll 1519.9 ms ✓ JpegTurbo_jll 1355.3 ms ✓ ColorTypes → StyledStringsExt 9086.9 ms ✓ Colors 851.8 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1295.0 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2906.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 1248.5 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1972.4 ms ✓ SortingAlgorithms 3118.2 ms ✓ QuadGK 10198.4 ms ✓ BioSequences 39501.8 ms ✓ PrettyTables 20888.1 ms ✓ Automa 1413.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 1354.8 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1428.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1429.5 ms ✓ Adapt → AdaptStaticArraysExt 15374.5 ms ✓ JSON3 4181.6 ms ✓ JSON 965.1 ms ✓ InlineStrings → ParsersExt 1038.4 ms ✓ CodecBzip2 1502.0 ms ✓ FreeType2_jll 1516.3 ms ✓ Rmath 5487.3 ms ✓ SpecialFunctions 2257.4 ms ✓ Sass 1234.4 ms ✓ Gumbo 1463.5 ms ✓ adwaita_icon_theme_jll 1478.2 ms ✓ Pixman_jll 1545.3 ms ✓ XML2_jll 1531.2 ms ✓ GettextRuntime_jll 1564.5 ms ✓ Xorg_libxcb_jll 1523.7 ms ✓ Git_jll 1471.3 ms ✓ Wayland_jll 1561.0 ms ✓ Libtiff_jll 1428.6 ms ✓ Graphics 11180.4 ms ✓ FlameGraphs 1346.4 ms ✓ FiniteDiff 9722.9 ms ✓ StatsBase 99511.2 ms ✓ DataFrames 21882.8 ms ✓ FASTX 8946.6 ms ✓ Documenter 3060.7 ms ✓ BenchmarkTools 2577.6 ms ✓ WeakRefStrings 1542.7 ms ✓ Fontconfig_jll 2559.8 ms ✓ HypergeometricFunctions 1358.9 ms ✓ DiffRules 1448.0 ms ✓ Glib_jll 1419.1 ms ✓ Xorg_libX11_jll 944.4 ms ✓ Git 1373.3 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1240.6 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1000.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2420.9 ms ✓ FASTX → BioSequencesExt 33015.1 ms ✓ CSV 2902.8 ms ✓ StatsFuns 6731.9 ms ✓ ForwardDiff 1429.6 ms ✓ Graphene_jll 1467.6 ms ✓ Xorg_libXfixes_jll 1452.4 ms ✓ Xorg_libXrender_jll 1408.2 ms ✓ Xorg_libXext_jll 1410.1 ms ✓ Xorg_libxkbfile_jll 1481.7 ms ✓ gdk_pixbuf_jll 4176.3 ms ✓ DocumenterTools 7685.3 ms ✓ StatsModels 12998.2 ms ✓ Distributions 2025.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1497.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 83039.0 ms ✓ MathOptInterface 1567.6 ms ✓ Xorg_libXdamage_jll 1515.6 ms ✓ Xorg_libXcursor_jll 1507.7 ms ✓ Xorg_libXrandr_jll 1672.6 ms ✓ Xorg_libXinerama_jll 1517.6 ms ✓ Xorg_libXi_jll 1623.4 ms ✓ Cairo_jll 1544.5 ms ✓ Libglvnd_jll 1572.4 ms ✓ Xorg_xkbcomp_jll 10548.9 ms ✓ GLM 4478.7 ms ✓ Distributions → DistributionsTestExt 2393.1 ms ✓ NLSolversBase 7376.5 ms ✓ NLopt 1598.5 ms ✓ HarfBuzz_jll 1502.4 ms ✓ Libepoxy_jll 1301.0 ms ✓ Xorg_xkeyboard_config_jll 4848.7 ms ✓ LineSearches 32057.2 ms ✓ PhyloNetworks 1618.8 ms ✓ Pango_jll 1523.2 ms ✓ xkbcommon_jll 12106.7 ms ✓ Optim 2828.4 ms ✓ Cairo 1644.6 ms ✓ Librsvg_jll 1722.8 ms ✓ GTK4_jll 6952.2 ms ✓ Optim → OptimMOIExt 51587.1 ms ✓ Gtk4  (julia:1108): Gtk-WARNING **: 17:27:02.362: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 28880.8 ms ✓ GtkObservables  (julia:1118): Gtk-WARNING **: 17:27:40.819: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 19238.2 ms ✓ ProfileView 23391.3 ms ✓ PhyNEST 215 dependencies successfully precompiled in 951 seconds. 39 already precompiled. 2 dependencies had output during precompilation: ┌ GtkObservables │ (julia:1108): Gtk-WARNING **: 17:27:02.362: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ ProfileView │ (julia:1118): Gtk-WARNING **: 17:27:40.819: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 964.13s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_WSxi1y/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [d3d80556] LineSearches v7.4.0 [429524aa] Optim v1.13.2 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.2 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WSxi1y/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.11 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.5 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.0 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.11 [8710efd8] GtkObservables v2.2.1 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.12 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.46.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [c46f51b8] ProfileView v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.1 [354b36f9] StringViews v1.3.5 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.51.3+0 [7746bdde] Glib_jll v2.86.0+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.11+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [079eb43e] NLopt_jll v2.10.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [2381bf8a] Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.6+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b437f822] adwaita_icon_theme_jll v43.0.1+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [059c91fe] hicolor_icon_theme_jll v0.18.0+0 [bf975903] iso_codes_jll v4.18.0+0 [b53b4c65] libpng_jll v1.6.50+0 [47bcb7c8] libsass_jll v3.6.6+0 [d8fb68d0] xkbcommon_jll v1.9.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 2.0s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.2s Test Summary: | Pass Total Time Testing Method-of-moment estimates of speciation times | 1500 1500 0.0s Testing PhyNEST tests passed Testing completed after 50.56s PkgEval succeeded after 1073.38s