Package evaluation to test MultilayerGraphs on Julia 1.14.0-DEV.71 (9f595ebbf8*) started at 2025-11-14T15:41:17.049 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.52s ################################################################################ # Installation # Installing MultilayerGraphs... Resolving package versions... Installed StridedViews ──────────────── v0.4.1 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.15.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Collects ──────────────────── v1.0.0 Installed OMEinsum ──────────────────── v0.9.2 Installed JLD2 ──────────────────────── v0.4.55 Installed DataStructures ────────────── v0.18.22 Installed Bijections ────────────────── v0.2.2 Installed AbstractTrees ─────────────── v0.4.5 Installed ProxyInterfaces ───────────── v1.1.1 Installed ExprParsers ───────────────── v1.2.3 Installed ConstructionBase ──────────── v1.6.0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed OrderedCollections ────────── v1.8.1 Installed BitBasis ──────────────────── v0.9.10 Installed Pipe ──────────────────────── v1.3.0 Installed StatsBase ─────────────────── v0.34.8 Installed TranscodingStreams ────────── v0.11.3 Installed Compat ────────────────────── v4.18.1 Installed BatchedRoutines ───────────── v0.2.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Combinatorics ─────────────── v1.0.3 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed Suppressor ────────────────── v0.2.8 Installed StatsAPI ──────────────────── v1.7.1 Installed SimpleWeightedGraphs ──────── v1.5.0 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed StaticArraysCore ──────────── v1.4.4 Installed TupleTools ────────────────── v1.6.0 Installed FileIO ────────────────────── v1.17.1 Installed SimpleMatch ───────────────── v1.1.0 Installed IrrationalConstants ───────── v0.2.6 Installed StringManipulation ────────── v0.4.1 Installed ChainRulesCore ────────────── v1.26.0 Installed QuadGK ────────────────────── v2.11.2 Installed StaticArrays ──────────────── v1.9.15 Installed MultilayerGraphs ──────────── v1.1.5 Installed Requires ──────────────────── v1.3.1 Installed SimpleTraits ──────────────── v0.9.5 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed CliqueTrees ───────────────── v1.12.2 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed PackageExtensionCompat ────── v1.0.2 Installed Parsers ───────────────────── v2.8.3 Installed FixedSizeArrays ───────────── v1.2.0 Installed Rmath ─────────────────────── v0.9.0 Installed StatsFuns ─────────────────── v1.5.2 Installed PrettyTables ──────────────── v3.1.0 Installed Distributions ─────────────── v0.25.122 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed DataTypesBasic ────────────── v2.0.3 Installed TreeWidthSolver ───────────── v0.3.5 Installed Reexport ──────────────────── v1.2.2 Installed StructEquality ────────────── v2.1.0 Installed Preferences ───────────────── v1.5.0 Installed Missings ──────────────────── v1.2.0 Installed MetaGraphs ────────────────── v0.7.2 Installed TensorOperations ──────────── v5.3.1 Installed SpecialFunctions ──────────── v2.6.1 Installed JLLWrappers ───────────────── v1.7.1 Installed VectorInterface ───────────── v0.5.0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed IterTools ─────────────────── v1.10.0 Installed LRUCache ──────────────────── v1.6.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed PDMats ────────────────────── v0.11.36 Installed OMEinsumContractionOrders ─── v1.2.2 Installed Inflate ───────────────────── v0.1.5 Installed Graphs ────────────────────── v1.13.1 Installed Strided ───────────────────── v2.3.2 Installed DocStringExtensions ───────── v0.9.5 Installed WhereTraits ───────────────── v1.1.2 Installed SimpleValueGraphs ─────────── v0.4.1 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [af984530] + MultilayerGraphs v1.1.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [a9ab73d0] + BatchedRoutines v0.2.2 [e2ed5e7c] + Bijections v0.2.2 [50ba71b6] + BitBasis v0.9.10 [d360d2e6] + ChainRulesCore v1.26.0 [60701a23] + CliqueTrees v1.12.2 [08986516] + Collects v1.0.0 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [83eed652] + DataTypesBasic v2.0.3 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [c5caad1f] + ExprParsers v1.2.3 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.15.0 [3821ddf9] + FixedSizeArrays v1.2.0 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [af984530] + MultilayerGraphs v1.1.5 [ebe7aa44] + OMEinsum v0.9.2 ⌃ [6f22d1fd] + OMEinsumContractionOrders v1.2.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [65ce6f38] + PackageExtensionCompat v1.0.2 [69de0a69] + Parsers v2.8.3 [b98c9c47] + Pipe v1.3.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [9b3bf0c4] + ProxyInterfaces v1.1.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [efcf1570] + Setfield v1.1.2 [a3ae8450] + SimpleMatch v1.1.0 [699a6c99] + SimpleTraits v0.9.5 [b43c691f] + SimpleValueGraphs v0.4.1 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [5e0ebb24] + Strided v2.3.2 [4db3bf67] + StridedViews v0.4.1 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [6aa20fa7] + TensorOperations v5.3.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7d267fc5] + TreeWidthSolver v0.3.5 [9d95972d] + TupleTools v1.6.0 [409d34a3] + VectorInterface v0.5.0 [c9d4e05b] + WhereTraits v1.1.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.38s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4781.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4550.5 ms ✓ MacroTools 1139.2 ms ✓ BatchedRoutines 932.6 ms ✓ Collects 797.4 ms ✓ Reexport 813.5 ms ✓ SimpleMatch 1161.2 ms ✓ Statistics 889.6 ms ✓ DataAPI 1150.2 ms ✓ ConstructionBase 2243.0 ms ✓ IrrationalConstants 810.3 ms ✓ DataValueInterfaces 985.8 ms ✓ StaticArraysCore WARNING: method definition for promote_typejoin at /home/pkgeval/.julia/packages/DataTypesBasic/1o2ng/src/promote_type.jl:214 declares type variable L but does not use it. 2589.8 ms ✓ DataTypesBasic 888.5 ms ✓ StatsAPI 1251.3 ms ✓ Requires 1302.8 ms ✓ OrderedCollections 1135.8 ms ✓ DocStringExtensions 1162.9 ms ✓ IterTools 1155.5 ms ✓ AbstractTrees 2250.2 ms ✓ Combinatorics 874.6 ms ✓ Suppressor 1037.8 ms ✓ Inflate 848.4 ms ✓ ProxyInterfaces 1025.7 ms ✓ Bijections 2485.6 ms ✓ FillArrays 1067.3 ms ✓ LRUCache 772.2 ms ✓ PtrArrays 742.0 ms ✓ Pipe 1231.4 ms ✓ TranscodingStreams 1017.8 ms ✓ TupleTools 1123.9 ms ✓ VectorInterface 733.6 ms ✓ IteratorInterfaceExtensions 878.5 ms ✓ LaTeXStrings 832.0 ms ✓ PackageExtensionCompat 1287.9 ms ✓ SuiteSparse 2272.8 ms ✓ Crayons 1202.4 ms ✓ Compat 1201.8 ms ✓ Preferences 3581.7 ms ✓ SimpleTraits 1029.7 ms ✓ FixedSizeArrays 1328.7 ms ✓ Statistics → SparseArraysExt 994.6 ms ✓ Missings 821.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 9249.2 ms ✓ FileIO 1640.9 ms ✓ LogExpFunctions 1495.2 ms ✓ FillArrays → FillArraysSparseArraysExt 980.7 ms ✓ FillArrays → FillArraysStatisticsExt 841.8 ms ✓ LRUCache → SerializationExt 1003.8 ms ✓ AliasTables 754.2 ms ✓ TableTraits 927.3 ms ✓ StridedViews 1844.3 ms ✓ PDMats 842.0 ms ✓ Compat → CompatLinearAlgebraExt 1163.6 ms ✓ JLLWrappers 895.7 ms ✓ PrecompileTools 743.1 ms ✓ FixedSizeArrays → RandomExt 3033.9 ms ✓ Setfield 1678.7 ms ✓ Tables 730.0 ms ✓ StridedViews → StridedViewsPtrArraysExt 1175.9 ms ✓ Strided 1398.5 ms ✓ FillArrays → FillArraysPDMatsExt 2865.4 ms ✓ ChainRulesCore 1155.4 ms ✓ StructEquality 4135.8 ms ✓ DataStructures 1461.4 ms ✓ Rmath_jll 1426.0 ms ✓ OpenSpecFun_jll 14439.5 ms ✓ StaticArrays 3254.4 ms ✓ StringManipulation 18280.8 ms ✓ Parsers 47317.2 ms ✓ JLD2 ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ To enable or disable precompilation, you can use the following script: │ │ ```julia │ using TensorOperations, Preferences │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ ``` │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. 3690.3 ms ✓ TensorOperations 1821.8 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 3572.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 5897.3 ms ✓ ExprParsers 1818.6 ms ✓ SortingAlgorithms 3575.5 ms ✓ QuadGK 1595.2 ms ✓ Rmath 5658.3 ms ✓ SpecialFunctions 1475.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1540.9 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 2610.2 ms ✓ BitBasis 4451.3 ms ✓ ArnoldiMethod 1482.8 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 41080.2 ms ✓ PrettyTables 4291.4 ms ✓ JSON 1880.4 ms ✓ TensorOperations → TensorOperationsChainRulesCoreExt 5306.5 ms ✓ StatsBase 4439.2 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2803.7 ms ✓ HypergeometricFunctions 10069.5 ms ✓ Graphs 1907.9 ms ✓ PDMats → StatsBaseExt 3077.2 ms ✓ StatsFuns 3806.7 ms ✓ SimpleWeightedGraphs 9469.2 ms ✓ MetaGraphs 6537.1 ms ✓ CliqueTrees 4449.4 ms ✓ TreeWidthSolver 3487.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 10023.1 ms ✓ Distributions WARNING: Constructor for type "SimpleGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleGraph" refers to `SimpleGraphs.SimpleGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`.  Hint: To silence the warning, qualify `SimpleGraph` as `SimpleGraphs.SimpleGraph` in the method signature or explicitly `import SimpleGraphs: SimpleGraph`. WARNING: Constructor for type "SimpleDiGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleDiGraph" refers to `SimpleGraphs.SimpleDiGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleDiGraph end`.  Hint: To silence the warning, qualify `SimpleDiGraph` as `SimpleGraphs.SimpleDiGraph` in the method signature or explicitly `import SimpleGraphs: SimpleDiGraph`. 4743.9 ms ✓ SimpleValueGraphs 13309.2 ms ✓ WhereTraits 4802.7 ms ✓ CliqueTrees → TreeWidthSolverExt 4111.7 ms ✓ Distributions → DistributionsChainRulesCoreExt 3627.0 ms ✓ Distributions → DistributionsTestExt 6604.3 ms ✓ OMEinsumContractionOrders 7521.1 ms ✓ OMEinsum WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 18734.2 ms ? MultilayerGraphs 104 dependencies successfully precompiled in 396 seconds. 39 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ TensorOperations │ ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ │ │ To enable or disable precompilation, you can use the following script: │ │ │ │ ```julia │ │ using TensorOperations, Preferences │ │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ │ ``` │ │ │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. └ ┌ DataTypesBasic │ WARNING: method definition for promote_typejoin at /home/pkgeval/.julia/packages/DataTypesBasic/1o2ng/src/promote_type.jl:214 declares type variable L but does not use it. └ ┌ SimpleValueGraphs │ WARNING: Constructor for type "SimpleGraph" was extended in `SimpleValueGraphs` without explicit qualification or import. │ NOTE: Assumed "SimpleGraph" refers to `SimpleGraphs.SimpleGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`. │ Hint: To silence the warning, qualify `SimpleGraph` as `SimpleGraphs.SimpleGraph` in the method signature or explicitly `import SimpleGraphs: SimpleGraph`. │ WARNING: Constructor for type "SimpleDiGraph" was extended in `SimpleValueGraphs` without explicit qualification or import. │ NOTE: Assumed "SimpleDiGraph" refers to `SimpleGraphs.SimpleDiGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleDiGraph end`. │ Hint: To silence the warning, qualify `SimpleDiGraph` as `SimpleGraphs.SimpleDiGraph` in the method signature or explicitly `import SimpleGraphs: SimpleDiGraph`. └ ┌ MultilayerGraphs │ WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. │ WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 409.94s ################################################################################ # Testing # Testing MultilayerGraphs Status `/tmp/jl_PRklMZ/Project.toml` [46ada45e] Agents v6.2.10 [31c24e10] Distributions v0.25.122 [86223c79] Graphs v1.13.1 [e6f89c97] LoggingExtras v1.2.0 ⌅ [626554b9] MetaGraphs v0.7.2 [af984530] MultilayerGraphs v1.1.5 [b43c691f] SimpleValueGraphs v0.4.1 [47aef6b3] SimpleWeightedGraphs v1.5.0 [2913bbd2] StatsBase v0.34.8 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_PRklMZ/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [46ada45e] Agents v6.2.10 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [a9ab73d0] BatchedRoutines v0.2.2 [e2ed5e7c] Bijections v0.2.2 [50ba71b6] BitBasis v0.9.10 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [60701a23] CliqueTrees v1.12.2 [944b1d66] CodecZlib v0.7.8 [08986516] Collects v1.0.0 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [83eed652] DataTypesBasic v2.0.3 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c5caad1f] ExprParsers v1.2.3 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [3821ddf9] FixedSizeArrays v1.2.0 [86223c79] Graphs v1.13.1 [cd3eb016] HTTP v1.10.19 [49057fa9] HybridStructs v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] 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LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Update message: Agents v6 This is a new major version of Agents.jl with lots of cool stuff! However, from this version onwards, we will stop posting update messages to the REPL console! If you want to be updated, follow this discourse post: https://discourse.julialang.org/t/agents-jl-v6-releases-announcement-post/111678 (and see the CHANGELOG.md file online for a list of changes!) WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 1 dependency had output during precompilation: ┌ MultilayerGraphs │ [Output was shown above] └ WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:47 ┌ Warning: Edge from vertex MV(Node("node_4"), :layer_sg, NamedTuple()) to vertex MV(Node("node_5"), :layer_sg, NamedTuple()) already doesn't exists in subgraph layer_sg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_4"), :layer_sg, NamedTuple()) to vertex MV(Node("node_5"), :layer_sg, NamedTuple()) already doesn't exists in subgraph layer_sg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_5"), :layer_sdg, NamedTuple()) to vertex MV(Node("node_4"), :layer_sdg, NamedTuple()) already doesn't exists in subgraph layer_sdg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:94 ┌ Warning: Edge from vertex MV(Node("node_7"), :layer_swg, NamedTuple()) to vertex MV(Node("node_6"), :layer_swg, NamedTuple()) already doesn't exists in subgraph layer_swg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:124 ┌ Warning: Edge from vertex MV(Node("node_1"), :layer_swdg, NamedTuple()) to vertex MV(Node("node_2"), :layer_swdg, NamedTuple()) already doesn't exists in subgraph layer_swdg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_6"), :layer_mg, NamedTuple()) to vertex MV(Node("node_7"), :layer_mg, NamedTuple()) already doesn't exists in subgraph layer_mg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_2"), :layer_vg, NamedTuple()) to vertex MV(Node("node_4"), :layer_vg, NamedTuple()) already doesn't exists in subgraph layer_vg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_4"), :layer_vodg, NamedTuple()) to vertex MV(Node("node_2"), :layer_vodg, NamedTuple()) already doesn't exists in subgraph layer_vodg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/interlayer.jl:18 [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=10.0, σ=1.0); lower=0.0, upper=20.0)... ### LAYERS ┌───────────┬─────────────────────────────────────────────────────────────────── │ NAME │ U ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_sg │ Si ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_swg │ SimpleWeigh ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_mg │ MetaGr ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_vg │ ValGraph{Int64, Tuple{String}, Tuple{Float64, String}, Tuple{}, ⋯ └───────────┴─────────────────────────────────────────────────────────────────── 1 column omitted ### INTERLAYERS ┌───────────────────────────────┬───────────┬───────────┬─────────────────────── │ NAME │ LAYER 1 │ LAYER 2 │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_swg │ layer_sg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_mg │ layer_sg │ layer_mg │ ValGraph{Int64, Tupl ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_swg_layer_mg │ layer_swg │ layer_mg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_vg │ layer_sg │ layer_vg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_vg_layer_swg │ layer_vg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_mg_layer_vg │ layer_mg │ layer_vg │ ⋯ └───────────────────────────────┴───────────┴───────────┴─────────────────────── 2 columns omitted multilayergraph = `MultilayerGraph` with vertex type `Int64` and weight type `Float64`. nothing nothing [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=10.0, σ=1.0); lower=0.0, upper=20.0) and Truncated(Normal{Float64}(μ=11.0, σ=1.0); lower=0.0, upper=22.0)... ### LAYERS ┌───────────┬─────────────────────────────────────────────────────────────────── │ NAME │ U ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_sg │ Si ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_swg │ SimpleWeigh ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_mg │ MetaGr ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_vg │ ValGraph{Int64, Tuple{String}, Tuple{Float64, String}, Tuple{}, ⋯ └───────────┴─────────────────────────────────────────────────────────────────── 1 column omitted ### INTERLAYERS ┌───────────────────────────────┬───────────┬───────────┬─────────────────────── │ NAME │ LAYER 1 │ LAYER 2 │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_swg │ layer_sg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_mg │ layer_sg │ layer_mg │ ValGraph{Int64, Tupl ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_swg_layer_mg │ layer_swg │ layer_mg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_vg │ layer_sg │ layer_vg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_vg_layer_swg │ layer_vg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_mg_layer_vg │ layer_mg │ layer_vg │ ⋯ └───────────────────────────────┴───────────┴───────────┴─────────────────────── 2 columns omitted multilayergraph = `MultilayerGraph` with vertex type `Int64` and weight type `Float64`. nothing nothing WARNING: Detected access to binding `Main.EigenAgent` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Test Summary: | Pass Broken Total Time MultilayerGraphs | 874 23 897 8m04.9s layer | 110 7 117 40.0s interlayer | 85 85 1m03.3s undirected | 263 8 271 4m06.3s directed | 382 8 390 1m27.1s node_aligned_edge_colored_graphs | 6 6 14.5s agents_jl_integration | 26 26 29.2s utilities | 2 2 4.4s Testing MultilayerGraphs tests passed Testing completed after 1139.58s PkgEval succeeded after 1592.05s