Package evaluation of NestedGraphs on Julia 1.12.0-beta2.30 (9e913d7251*) started at 2025-05-05T10:36:29.325


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.27s


################################################################################
# Installation
#

Installing NestedGraphs...
   Resolving package versions...
   Installed Inflate ───────────── v0.1.5
   Installed Compat ────────────── v4.16.0
   Installed AbstractTrees ─────── v0.4.5
   Installed OrderedCollections ── v1.8.0
   Installed MacroTools ────────── v0.5.16
   Installed PrecompileTools ───── v1.3.2
   Installed NestedGraphs ──────── v0.2.3
   Installed SimpleTraits ──────── v0.9.4
   Installed ArnoldiMethod ─────── v0.4.0
   Installed Statistics ────────── v1.11.1
   Installed StaticArrays ──────── v1.9.13
   Installed Preferences ───────── v1.4.3
   Installed DocStringExtensions ─ v0.9.4
   Installed Graphs ────────────── v1.12.1
   Installed StaticArraysCore ──── v1.4.3
   Installed DataStructures ────── v0.18.22
    Updating `~/.julia/environments/v1.12/Project.toml`
  [03c36417] + NestedGraphs v0.2.3
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [ec485272] + ArnoldiMethod v0.4.0
  [34da2185] + Compat v4.16.0
  [864edb3b] + DataStructures v0.18.22
  [ffbed154] + DocStringExtensions v0.9.4
  [86223c79] + Graphs v1.12.1
  [d25df0c9] + Inflate v0.1.5
  [1914dd2f] + MacroTools v0.5.16
  [03c36417] + NestedGraphs v0.2.3
  [bac558e1] + OrderedCollections v1.8.0
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [699a6c99] + SimpleTraits v0.9.4
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0

Installation completed after 2.01s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   5639.2 ms  ✓ TestEnv
  1 dependency successfully precompiled in 6 seconds. 25 already precompiled.

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    MethodError: no method matching prune_manifest(::Pkg.Types.Manifest, ::Vector{UUID})
│    The function `prune_manifest` exists, but no method is defined for this combination of argument types.
│    
│    Closest candidates are:
│      prune_manifest(::Pkg.Types.Manifest, !Matched::Set{UUID})
│       @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1183
│      prune_manifest(!Matched::Pkg.Types.EnvCache)
│       @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1162
│    
│    Stacktrace:
│     [1] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:40
│     [2] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:9
│     [3] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [4] include(mod::Module, _path::String)
│       @ Base ./Base.jl:303
│     [5] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:328
│     [6] _start()
│       @ Base ./client.jl:561
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   1644.4 ms  ✓ Statistics
   1051.2 ms  ✓ StaticArraysCore
   1314.7 ms  ✓ OrderedCollections
    991.6 ms  ✓ Inflate
   1105.5 ms  ✓ DocStringExtensions
   4895.3 ms  ✓ MacroTools
   1161.4 ms  ✓ AbstractTrees
   1734.2 ms  ✓ Compat
   1322.3 ms  ✓ Preferences
   1896.9 ms  ✓ Statistics → SparseArraysExt
   3889.6 ms  ✓ SimpleTraits
    958.6 ms  ✓ Compat → CompatLinearAlgebraExt
    986.9 ms  ✓ PrecompileTools
   4394.9 ms  ✓ DataStructures
  14797.3 ms  ✓ StaticArrays
   1541.7 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   4257.9 ms  ✓ ArnoldiMethod
  11336.0 ms  ✓ Graphs
   6877.6 ms  ✓ NestedGraphs
  19 dependencies successfully precompiled in 67 seconds. 16 already precompiled.

Precompilation completed after 83.31s


################################################################################
# Testing
#

     Testing NestedGraphs
        Test Could not use exact versions of packages in manifest. Re-resolving dependencies
   Installed TestSetExtensions ── v3.0.0
   Installed LoweredCodeUtils ─── v3.2.2
   Installed TranscodingStreams ─ v0.11.3
   Installed JLD2 ─────────────── v0.4.54
   Installed JuliaInterpreter ─── v0.9.46
   Installed JuliaSyntax ──────── v1.0.2
   Installed JET ──────────────── v0.10.4
   Installed Aqua ─────────────── v0.8.11
   Installed DeepDiffs ────────── v1.2.0
   Installed CodeTracking ─────── v1.3.9
   Installed Requires ─────────── v1.3.1
   Installed FileIO ───────────── v1.17.0
   Installed MetaGraphs ───────── v0.8.0
   Installed AttributeGraphs ──── v0.3.0
   Installed MetaGraphsNext ───── v0.6.0
    Updating `/tmp/jl_Qt48WG/Project.toml`
  [4c88cf16] ↑ Aqua v0.8.7 ⇒ v0.8.11
  [86223c79] ↑ Graphs v1.11.0 ⇒ v1.12.1
  [c3a54625] ↑ JET v0.9.0 ⇒ v0.10.4
  [626554b9] ↑ MetaGraphs v0.7.2 ⇒ v0.8.0
  [03c36417] ~ NestedGraphs v0.2.2 `~/.julia/packages/NestedGraphs/3fYbM` ⇒ v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [8dfed614] ~ Test ⇒ v1.11.0
    Updating `/tmp/jl_Qt48WG/Manifest.toml`
  [4c88cf16] ↑ Aqua v0.8.7 ⇒ v0.8.11
  [da1fd8a2] ↑ CodeTracking v1.3.5 ⇒ v1.3.9
  [34da2185] ↑ Compat v4.15.0 ⇒ v4.16.0
  [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22
  [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.4
  [5789e2e9] ↑ FileIO v1.16.3 ⇒ v1.17.0
  [86223c79] ↑ Graphs v1.11.0 ⇒ v1.12.1
  [d25df0c9] ↑ Inflate v0.1.4 ⇒ v0.1.5
  [c3a54625] ↑ JET v0.9.0 ⇒ v0.10.4
⌅ [033835bb] ↑ JLD2 v0.4.48 ⇒ v0.4.54
⌅ [aa1ae85d] ↑ JuliaInterpreter v0.9.31 ⇒ v0.9.46
  [70703baa] + JuliaSyntax v1.0.2
⌃ [6f1432cf] ↑ LoweredCodeUtils v2.4.6 ⇒ v3.2.2
  [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.16
  [626554b9] ↑ MetaGraphs v0.7.2 ⇒ v0.8.0
  [03c36417] ~ NestedGraphs v0.2.2 `~/.julia/packages/NestedGraphs/3fYbM` ⇒ v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.0
  [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.2
  [189a3867] - Reexport v1.2.2
  [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1
  [90137ffa] ↑ StaticArrays v1.9.4 ⇒ v1.9.13
  [1e83bf80] ↑ StaticArraysCore v1.4.2 ⇒ v1.4.3
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [3bb67fe8] ↑ TranscodingStreams v0.10.8 ⇒ v0.11.3
  [c8ffd9c3] - MbedTLS_jll v2.28.2+1
  [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2
  [56f22d72] ~ Artifacts ⇒ v1.11.0
  [2a0f44e3] ~ Base64 ⇒ v1.11.0
  [ade2ca70] ~ Dates ⇒ v1.11.0
  [8ba89e20] ~ Distributed ⇒ v1.11.0
  [7b1f6079] ~ FileWatching ⇒ v1.11.0
  [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [76f85450] ~ LibGit2 ⇒ v1.11.0
  [8f399da3] ~ Libdl ⇒ v1.11.0
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [56ddb016] ~ Logging ⇒ v1.11.0
  [d6f4376e] ~ Markdown ⇒ v1.11.0
  [a63ad114] ~ Mmap ⇒ v1.11.0
  [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0
  [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.12.0
  [de0858da] ~ Printf ⇒ v1.11.0
  [3fa0cd96] - REPL
  [9a3f8284] ~ Random ⇒ v1.11.0
  [9e88b42a] ~ Serialization ⇒ v1.11.0
  [1a1011a3] ~ SharedArrays ⇒ v1.11.0
  [6462fe0b] ~ Sockets ⇒ v1.11.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] ~ Test ⇒ v1.11.0
  [cf7118a7] ~ UUIDs ⇒ v1.11.0
  [4ec0a83e] ~ Unicode ⇒ v1.11.0
  [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1
  [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.11.1+1
  [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.0+0
  [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1
  [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.2.25
  [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.8.3+2
  [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2
  [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.12.0+0
  [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.64.0+1
  [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
        Test Successfully re-resolved
      Status `/tmp/jl_Qt48WG/Project.toml`
  [4c88cf16] Aqua v0.8.11
  [d091dd56] AttributeGraphs v0.3.0
  [86223c79] Graphs v1.12.1
  [c3a54625] JET v0.10.4
  [626554b9] MetaGraphs v0.8.0
⌃ [fa8bd995] MetaGraphsNext v0.6.0
  [03c36417] NestedGraphs v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [699a6c99] SimpleTraits v0.9.4
  [98d24dd4] TestSetExtensions v3.0.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_Qt48WG/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [4c88cf16] Aqua v0.8.11
  [ec485272] ArnoldiMethod v0.4.0
  [d091dd56] AttributeGraphs v0.3.0
  [da1fd8a2] CodeTracking v1.3.9
  [34da2185] Compat v4.16.0
  [864edb3b] DataStructures v0.18.22
  [ab62b9b5] DeepDiffs v1.2.0
  [ffbed154] DocStringExtensions v0.9.4
  [5789e2e9] FileIO v1.17.0
  [86223c79] Graphs v1.12.1
  [d25df0c9] Inflate v0.1.5
  [c3a54625] JET v0.10.4
⌅ [033835bb] JLD2 v0.4.54
⌅ [aa1ae85d] JuliaInterpreter v0.9.46
  [70703baa] JuliaSyntax v1.0.2
⌃ [6f1432cf] LoweredCodeUtils v3.2.2
  [1914dd2f] MacroTools v0.5.16
  [626554b9] MetaGraphs v0.8.0
⌃ [fa8bd995] MetaGraphsNext v0.6.0
  [03c36417] NestedGraphs v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [bac558e1] OrderedCollections v1.8.0
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [ae029012] Requires v1.3.1
  [699a6c99] SimpleTraits v0.9.4
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [98d24dd4] TestSetExtensions v3.0.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.2.25
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.0+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling packages...
   4122.0 ms  ✓ AttributeGraphs
  1 dependency successfully precompiled in 4 seconds. 33 already precompiled.
Precompiling packages...
   3618.6 ms  ✓ NestedGraphs → NestedGraphsAttributeGraphsExt
  1 dependency successfully precompiled in 4 seconds. 36 already precompiled.
Precompiling packages...
   1332.1 ms  ✓ TranscodingStreams
   1318.6 ms  ✓ Requires
  11556.7 ms  ✓ FileIO
           ✗ JLD2
Info Given MetaGraphs was explicitly requested, output will be shown live 
Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_FoGqXh").

Fatal error:
ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2")
Stacktrace:
  [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2178
  [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2186
  [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing)
    @ Base ./loading.jl:2456
  [4] _require_prelocked
    @ ./loading.jl:2455 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:2453
  [7] require
    @ ./loading.jl:2451 [inlined]
  [8] #37
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined]
  [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock)
    @ Base ./lock.jl:335
 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203
 [11] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
 [12] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
 [13] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
 [14] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
 [15] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
 [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [17] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [18] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [20] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [21] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [22] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
Stacktrace:
  [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71
  [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String)
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66
  [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228
  [4] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
  [5] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
  [6] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
  [7] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
  [8] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
  [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [10] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [11] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [13] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [14] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [15] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
 [17] IncludeInto
    @ ./Base.jl:305 [inlined]
 [18] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2974
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2820
 [24] include_string
    @ ./loading.jl:2830 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:326
 [26] _start()
    @ Base ./client.jl:561
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_HIMXBw".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3261
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2647
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#233
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3832
 [11] maybe_cachefile_lock
    @ ./loading.jl:3829 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2633
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2461
 [14] macro expansion
    @ ./loading.jl:2389 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2354
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2330
 [18] top-level scope
    @ ~/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:3
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2974
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2820
 [24] include_string
    @ ./loading.jl:2830 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:326
 [26] _start()
    @ Base ./client.jl:561
in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:1
in expression starting at stdin:5
           ✗ MetaGraphs
  3 dependencies successfully precompiled in 137 seconds. 48 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

MetaGraphs 

Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.12/MetaGraphs/jl_MEdUU4".
Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_FoGqXh").

Fatal error:
ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2")
Stacktrace:
  [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2178
  [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2186
  [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing)
    @ Base ./loading.jl:2456
  [4] _require_prelocked
    @ ./loading.jl:2455 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:2453
  [7] require
    @ ./loading.jl:2451 [inlined]
  [8] #37
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined]
  [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock)
    @ Base ./lock.jl:335
 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203
 [11] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
 [12] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
 [13] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
 [14] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
 [15] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
 [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [17] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [18] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [20] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [21] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [22] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
Stacktrace:
  [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71
  [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String)
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66
  [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228
  [4] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
  [5] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
  [6] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
  [7] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
  [8] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
  [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [10] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [11] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [13] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [14] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [15] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
 [17] IncludeInto
    @ ./Base.jl:305 [inlined]
 [18] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2974
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2820
 [24] include_string
    @ ./loading.jl:2830 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:326
 [26] _start()
    @ Base ./client.jl:561
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_HIMXBw".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3261
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2647
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#233
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3832
 [11] maybe_cachefile_lock
    @ ./loading.jl:3829 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2633
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2461
 [14] macro expansion
    @ ./loading.jl:2389 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2354
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2330
 [18] top-level scope
    @ ~/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:3
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2974
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2820
 [24] include_string
    @ ./loading.jl:2830 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:326
 [26] _start()
    @ Base ./client.jl:561
in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/NestedGraphs/3fYbM/test/runtests.jl:2

Testing failed after 156.18s

ERROR: LoadError: Package NestedGraphs errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:561
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 279.85s: package fails to precompile