Package evaluation of Biofilm on Julia 1.12.0-beta2.30 (9e913d7251*) started at 2025-05-05T12:33:32.642 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.29s ################################################################################ # Installation # Installing Biofilm... Resolving package versions... Installed libdecor_jll ──────────────────────── v0.2.2+0 Installed OrdinaryDiffEqRKN ─────────────────── v1.1.0 Installed JpegTurbo_jll ─────────────────────── v3.1.1+0 Installed OrdinaryDiffEqStabilizedRK ────────── v1.1.0 Installed x265_jll ──────────────────────────── v3.5.0+0 Installed LERC_jll ──────────────────────────── v4.0.1+0 Installed GR_jll ────────────────────────────── v0.73.14+0 Installed OrdinaryDiffEqRosenbrock ──────────── v1.9.0 Installed Preferences ───────────────────────── v1.4.3 Installed libfdk_aac_jll ────────────────────── v2.0.3+0 Installed LoggingExtras ─────────────────────── v1.1.0 Installed FastGaussQuadrature ───────────────── v1.0.2 Installed Libmount_jll ──────────────────────── v2.41.0+0 Installed RegistryInstances ─────────────────── v0.1.0 Installed Accessors ─────────────────────────── v0.1.42 Installed NonlinearSolve ────────────────────── v4.8.0 Installed Xorg_xkbcomp_jll ──────────────────── v1.4.7+0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.3.0 Installed Unitful ───────────────────────────── v1.22.0 Installed Opus_jll ──────────────────────────── v1.3.3+0 Installed Contour ───────────────────────────── v0.6.3 Installed RelocatableFolders ────────────────── v1.0.1 Installed Measures ──────────────────────────── v0.3.2 Installed TimerOutputs ──────────────────────── v0.5.28 Installed ConcurrentUtilities ───────────────── v2.5.0 Installed SciMLJacobianOperators ────────────── v0.1.3 Installed StaticArrays ──────────────────────── v1.9.13 Installed Git_jll ───────────────────────────── v2.49.0+0 Installed Grisu ─────────────────────────────── v1.0.2 Installed ProgressMeter ─────────────────────── v1.10.4 Installed Polyester ─────────────────────────── v0.7.16 Installed OrdinaryDiffEqPRK ─────────────────── v1.1.0 Installed Xorg_xcb_util_wm_jll ──────────────── v0.4.1+1 Installed Xorg_xcb_util_image_jll ───────────── v0.4.0+1 Installed RecipesPipeline ───────────────────── v0.6.12 Installed EnumX ─────────────────────────────── v1.0.5 Installed PlotUtils ─────────────────────────── v1.4.3 Installed Sundials_jll ──────────────────────── v5.2.3+0 Installed MaybeInplace ──────────────────────── v0.1.4 Installed RecursiveArrayTools ───────────────── v3.33.0 Installed Xorg_libSM_jll ────────────────────── v1.2.6+0 Installed OrdinaryDiffEqCore ────────────────── v1.23.0 Installed OpenSSL ───────────────────────────── v1.4.3 Installed DelimitedFiles ────────────────────── v1.9.1 Installed HTTP ──────────────────────────────── v1.10.16 Installed CEnum ─────────────────────────────── v0.5.0 Installed FunctionWrappers ──────────────────── v1.1.3 Installed Xorg_xcb_util_jll ─────────────────── v0.4.0+1 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.2.0 Installed Statistics ────────────────────────── v1.11.1 Installed IntelOpenMP_jll ───────────────────── v2025.0.4+0 Installed Xorg_libxkbfile_jll ───────────────── v1.1.3+0 Installed Xorg_libXinerama_jll ──────────────── v1.1.6+0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.3.0 Installed ColorSchemes ──────────────────────── v3.29.0 Installed Cairo_jll ─────────────────────────── v1.18.4+0 Installed Fontconfig_jll ────────────────────── v2.16.0+0 Installed EpollShim_jll ─────────────────────── v0.0.20230411+1 Installed Missings ──────────────────────────── v1.2.0 Installed Distances ─────────────────────────── v0.10.12 Installed OrdinaryDiffEqVerner ──────────────── v1.2.0 Installed FiniteDiff ────────────────────────── v2.27.0 Installed MuladdMacro ───────────────────────── v0.2.4 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed GR ────────────────────────────────── v0.73.14 Installed Xorg_libXau_jll ───────────────────── v1.0.13+0 Installed IrrationalConstants ───────────────── v0.2.4 Installed Static ────────────────────────────── v1.2.0 Installed Showoff ───────────────────────────── v1.0.3 Installed FastPower ─────────────────────────── v1.1.2 Installed Functors ──────────────────────────── v0.4.12 Installed FFMPEG ────────────────────────────── v0.4.2 Installed Pango_jll ─────────────────────────── v1.56.1+0 Installed JSON ──────────────────────────────── v0.21.4 Installed DiffEqBase ────────────────────────── v6.171.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed SciMLBase ─────────────────────────── v2.86.2 Installed PtrArrays ─────────────────────────── v1.3.0 Installed OrdinaryDiffEqFIRK ────────────────── v1.10.0 Installed NonlinearSolveQuasiNewton ─────────── v1.3.0 Installed NLsolve ───────────────────────────── v4.5.1 Installed ADTypes ───────────────────────────── v1.14.0 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.6.1 Installed Xorg_xcb_util_keysyms_jll ─────────── v0.4.0+1 Installed SpecialFunctions ──────────────────── v2.5.1 Installed xkbcommon_jll ─────────────────────── v1.8.1+0 Installed Bzip2_jll ─────────────────────────── v1.0.9+0 Installed LinearSolve ───────────────────────── v3.10.0 Installed ProgressLogging ───────────────────── v0.1.4 Installed BracketingNonlinearSolve ──────────── v1.2.0 Installed SimpleBufferStream ────────────────── v1.2.0 Installed SimpleNonlinearSolve ──────────────── v2.3.0 Installed PlotThemes ────────────────────────── v3.3.0 Installed XZ_jll ────────────────────────────── v5.8.1+0 Installed IfElse ────────────────────────────── v0.1.1 Installed LineSearch ────────────────────────── v0.1.4 Installed NonlinearSolveSpectralMethods ─────── v1.2.0 Installed StaticArraysCore ──────────────────── v1.4.3 Installed HarfBuzz_jll ──────────────────────── v8.5.0+0 Installed NaNMath ───────────────────────────── v1.1.3 Installed OrdinaryDiffEq ────────────────────── v6.95.1 Installed fzf_jll ───────────────────────────── v0.61.1+0 Installed ManualMemory ──────────────────────── v0.1.8 Installed ThreadingUtilities ────────────────── v0.5.3 Installed NLSolversBase ─────────────────────── v7.9.1 Installed SparseMatrixColorings ─────────────── v0.4.19 Installed TranscodingStreams ────────────────── v0.11.3 Installed GLFW_jll ──────────────────────────── v3.4.0+2 Installed UnicodeFun ────────────────────────── v0.4.1 Installed LazyArrays ────────────────────────── v2.6.1 Installed DataStructures ────────────────────── v0.18.22 Installed Colors ────────────────────────────── v0.13.0 Installed FriBidi_jll ───────────────────────── v1.0.17+0 Installed LZO_jll ───────────────────────────── v2.10.3+0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed StatsAPI ──────────────────────────── v1.7.0 Installed LeftChildRightSiblingTrees ────────── v0.2.0 Installed JLFzf ─────────────────────────────── v0.1.11 Installed ExprTools ─────────────────────────── v0.1.10 Installed Compat ────────────────────────────── v4.16.0 Installed MbedTLS ───────────────────────────── v1.1.9 Installed CodecZlib ─────────────────────────── v0.7.8 Installed StaticArrayInterface ──────────────── v1.8.0 Installed libpng_jll ────────────────────────── v1.6.47+0 Installed StatsBase ─────────────────────────── v0.34.5 Installed FreeType2_jll ─────────────────────── v2.13.4+0 Installed ArrayLayouts ──────────────────────── v1.11.1 Installed x264_jll ──────────────────────────── v2021.5.5+0 Installed mtdev_jll ─────────────────────────── v1.1.6+0 Installed ExceptionUnwrapping ───────────────── v0.1.11 Installed OrdinaryDiffEqLinear ──────────────── v1.1.0 Installed SciMLStructures ───────────────────── v1.7.0 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed Xorg_libxcb_jll ───────────────────── v1.17.1+0 Installed Scratch ───────────────────────────── v1.2.1 Installed gperf_jll ─────────────────────────── v3.1.1+1 Installed Dbus_jll ──────────────────────────── v1.16.2+0 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed ColorTypes ────────────────────────── v0.12.1 Installed libaom_jll ────────────────────────── v3.11.0+0 Installed DiffRules ─────────────────────────── v1.15.1 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed OrdinaryDiffEqExplicitRK ──────────── v1.1.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+0 Installed GenericSchur ──────────────────────── v0.5.5 Installed eudev_jll ─────────────────────────── v3.2.9+0 Installed Plots ─────────────────────────────── v1.40.13 Installed LayoutPointers ────────────────────── v0.1.17 Installed Sundials ──────────────────────────── v4.28.0 Installed PrettyTables ──────────────────────── v2.4.0 Installed OrdinaryDiffEqPDIRK ───────────────── v1.3.0 Installed Zstd_jll ──────────────────────────── v1.5.7+1 Installed TensorCore ────────────────────────── v0.1.1 Installed Xorg_xcb_util_cursor_jll ──────────── v0.1.4+0 Installed TableTraits ───────────────────────── v1.0.1 Installed Expat_jll ─────────────────────────── v2.6.5+0 Installed OrdinaryDiffEqQPRK ────────────────── v1.1.0 Installed OrdinaryDiffEqFunctionMap ─────────── v1.1.1 Installed DiffResults ───────────────────────── v1.1.0 Installed Xorg_libXext_jll ──────────────────── v1.3.7+0 Installed SciMLOperators ────────────────────── v0.3.14 Installed Parsers ───────────────────────────── v2.8.3 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.2.0 Installed NonlinearSolveBase ────────────────── v1.6.0 Installed DiffEqCallbacks ───────────────────── v2.37.0 Installed MKL_jll ───────────────────────────── v2025.0.1+1 Installed Libtiff_jll ───────────────────────── v4.7.1+0 Installed Format ────────────────────────────── v1.3.7 Installed Setfield ──────────────────────────── v1.1.2 Installed JLLWrappers ───────────────────────── v1.7.0 Installed NonlinearSolveFirstOrder ──────────── v1.4.0 Installed ConstructionBase ──────────────────── v1.5.8 Installed DataValueInterfaces ───────────────── v1.0.0 Installed ColorVectorSpace ──────────────────── v0.11.0 Installed EnzymeCore ────────────────────────── v0.8.8 Installed AbstractTrees ─────────────────────── v0.4.5 Installed libevdev_jll ──────────────────────── v1.11.0+0 Installed libinput_jll ──────────────────────── v1.18.0+0 Installed OrderedCollections ────────────────── v1.8.0 Installed ChainRulesCore ────────────────────── v1.25.1 Installed OrdinaryDiffEqExponentialRK ───────── v1.4.0 Installed FastClosures ──────────────────────── v0.3.2 Installed Xorg_libXrender_jll ───────────────── v0.9.12+0 Installed Ogg_jll ───────────────────────────── v1.3.5+1 Installed Vulkan_Loader_jll ─────────────────── v1.3.243+0 Installed ExproniconLite ────────────────────── v0.10.14 Installed Libffi_jll ────────────────────────── v3.2.2+2 Installed PolyesterWeave ────────────────────── v0.2.2 Installed Xorg_libXi_jll ────────────────────── v1.8.3+0 Installed Qt6ShaderTools_jll ────────────────── v6.7.1+1 Installed TerminalLoggers ───────────────────── v0.1.7 Installed LineSearches ──────────────────────── v7.3.0 Installed Reexport ──────────────────────────── v1.2.2 Installed OrdinaryDiffEqTsit5 ───────────────── v1.1.0 Installed Qt6Declarative_jll ────────────────── v6.7.1+2 Installed PreallocationTools ────────────────── v0.4.27 Installed OrdinaryDiffEqExtrapolation ───────── v1.5.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed OrdinaryDiffEqLowStorageRK ────────── v1.3.0 Installed Krylov ────────────────────────────── v0.10.1 Installed AliasTables ───────────────────────── v1.1.3 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed ArrayInterface ────────────────────── v7.18.0 Installed MacroTools ────────────────────────── v0.5.16 Installed MbedTLS_jll ───────────────────────── v2.28.6+2 Installed LazilyInitializedFields ───────────── v1.3.0 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed Xorg_libXcursor_jll ───────────────── v1.2.4+0 Installed UnPack ────────────────────────────── v1.0.2 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.3.0 Installed CommonSolve ───────────────────────── v0.2.4 Installed InverseFunctions ──────────────────── v0.1.17 Installed Git ───────────────────────────────── v1.3.1 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed DocStringExtensions ───────────────── v0.9.4 Installed Wayland_protocols_jll ─────────────── v1.36.0+0 Installed ExponentialUtilities ──────────────── v1.27.0 Installed DifferentiationInterface ──────────── v0.6.52 Installed Libuuid_jll ───────────────────────── v2.41.0+0 Installed Xorg_xcb_util_renderutil_jll ──────── v0.3.9+1 Installed CompositionsBase ──────────────────── v0.1.2 Installed Xorg_libICE_jll ───────────────────── v1.1.2+0 Installed StableRNGs ────────────────────────── v1.0.2 Installed Crayons ───────────────────────────── v4.1.1 Installed XML2_jll ──────────────────────────── v2.13.6+1 Installed OrdinaryDiffEqBDF ─────────────────── v1.5.0 Installed StrideArraysCore ──────────────────── v0.5.7 Installed Adapt ─────────────────────────────── v4.3.0 Installed OrdinaryDiffEqDifferentiation ─────── v1.7.0 Installed Latexify ──────────────────────────── v0.16.7 Installed libass_jll ────────────────────────── v0.15.2+0 Installed Pixman_jll ────────────────────────── v0.44.2+0 Installed Graphite2_jll ─────────────────────── v1.3.15+0 Installed Documenter ────────────────────────── v1.10.2 Installed Wayland_jll ───────────────────────── v1.21.0+2 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.1.0 Installed MarkdownAST ───────────────────────── v0.1.2 Installed RuntimeGeneratedFunctions ─────────── v0.5.14 Installed Xorg_xtrans_jll ───────────────────── v1.6.0+0 Installed Moshi ─────────────────────────────── v0.3.5 Installed Jieko ─────────────────────────────── v0.2.1 Installed BitFlags ──────────────────────────── v0.1.9 Installed OrdinaryDiffEqFeagin ──────────────── v1.1.0 Installed CPUSummary ────────────────────────── v0.2.6 Installed Xorg_xkeyboard_config_jll ─────────── v2.44.0+0 Installed Gettext_jll ───────────────────────── v0.21.0+0 Installed Tables ────────────────────────────── v1.12.0 Installed LLVMOpenMP_jll ────────────────────── v18.1.8+0 Installed DataAPI ───────────────────────────── v1.16.0 Installed IOCapture ─────────────────────────── v0.2.5 Installed Xorg_libXrandr_jll ────────────────── v1.5.5+0 Installed FixedPointNumbers ─────────────────── v0.8.5 Installed RecipesBase ───────────────────────── v1.3.4 Installed Xorg_libXfixes_jll ────────────────── v6.0.1+0 Installed ConcreteStructs ───────────────────── v0.2.3 Installed Qt6Wayland_jll ────────────────────── v6.7.1+1 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed FFMPEG_jll ────────────────────────── v4.4.4+1 Installed PrecompileTools ───────────────────── v1.3.2 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed Qt6Base_jll ───────────────────────── v6.7.1+1 Installed SymbolicIndexingInterface ─────────── v0.3.40 Installed Biofilm ───────────────────────────── v1.2.2 Installed LAME_jll ──────────────────────────── v3.100.2+0 Installed libvorbis_jll ─────────────────────── v1.3.7+2 Installed URIs ──────────────────────────────── v1.5.2 Installed FillArrays ────────────────────────── v1.13.0 Installed ForwardDiff ───────────────────────── v0.10.38 Installed OrdinaryDiffEqSymplecticRK ────────── v1.3.0 Installed Requires ──────────────────────────── v1.3.1 Installed FastBroadcast ─────────────────────── v0.3.5 Installed OrdinaryDiffEqDefault ─────────────── v1.3.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.1.0 Installed Glib_jll ──────────────────────────── v2.82.4+0 Installed Parameters ────────────────────────── v0.12.3 Installed UnitfulLatexify ───────────────────── v1.6.4 Installed Unzip ─────────────────────────────── v0.2.0 Installed Xorg_libXdmcp_jll ─────────────────── v1.1.6+0 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.3.0 Installed StringManipulation ────────────────── v0.4.1 Installed SortingAlgorithms ─────────────────── v1.2.1 Installed Libglvnd_jll ──────────────────────── v1.7.1+1 Installed Xorg_libX11_jll ───────────────────── v1.8.12+0 Installing 82 artifacts Installed artifact Xorg_xcb_util_image 61.6 KiB Installed artifact LERC 272.9 KiB Installed artifact libevdev 121.2 KiB Installed artifact libpng 328.5 KiB Installed artifact libinput 853.5 KiB Installed artifact libdecor 44.1 KiB Installed artifact Xorg_xcb_util_wm 155.8 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact GLFW 180.1 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Expat 271.4 KiB Installed artifact xkbcommon 653.4 KiB Installed artifact Libtiff 3.2 MiB Installed artifact Graphite2 120.2 KiB Installed artifact MbedTLS 2.1 MiB Installed artifact x265 1.1 MiB Installed artifact libaom 6.4 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Gettext 4.5 MiB Installed artifact Wayland_protocols 129.5 KiB Installed artifact mtdev 86.4 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Cairo 2.2 MiB Installed artifact Libuuid 3.5 MiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact JpegTurbo 1.6 MiB Installed artifact Glib 7.6 MiB Installed artifact gperf 119.3 KiB Installed artifact Xorg_xcb_util_renderutil 39.0 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Sundials 2.1 MiB Installed artifact LAME 292.5 KiB Installed artifact fzf 3.3 MiB Installed artifact Xorg_libXfixes 195.9 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact GR 17.1 MiB Installed artifact Bzip2 503.5 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact x264 2.0 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact libass 372.4 KiB Installed artifact Xorg_xcb_util_cursor 57.0 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact XML2 2.5 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Opus 908.1 KiB Installed artifact Zstd 646.0 KiB Installed artifact Libffi 34.1 KiB Installed artifact Ogg 257.2 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact Wayland 406.1 KiB Installed artifact Fontconfig 522.5 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Qt6Wayland 2.0 MiB Installed artifact libvorbis 271.0 KiB Installed artifact FFMPEG 10.6 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Qt6Base 19.8 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Xorg_xcb_util_keysyms 25.8 KiB Installed artifact Qt6ShaderTools 2.0 MiB Installed artifact LZO 208.9 KiB Installed artifact Dbus 489.8 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Xorg_xcb_util 46.4 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact eudev 3.1 MiB Installed artifact Libmount 6.4 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Qt6Declarative 18.6 MiB Installed artifact Git 49.6 MiB Updating `~/.julia/environments/v1.12/Project.toml` [210d8ceb] + Biofilm v1.2.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [210d8ceb] + Biofilm v1.2.2 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.2.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.171.0 ⌅ [459566f4] + DiffEqCallbacks v2.37.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [e30172f5] + Documenter v1.10.2 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [c87230d0] + FFMPEG v0.4.2 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.2 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.4.12 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.14 [c145ed77] + GenericSchur v0.5.5 [d7ba0133] + Git v1.3.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.16 [b5f81e59] + IOCapture v0.2.5 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + 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v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.2.25 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 43.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 2920.8 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 1266.29s ################################################################################ # Testing # Testing Biofilm Status `/tmp/jl_16JFsw/Project.toml` [7d9f7c33] Accessors v0.1.42 [210d8ceb] Biofilm v1.2.2 ⌅ [459566f4] DiffEqCallbacks v2.37.0 [e30172f5] Documenter v1.10.2 [b964fa9f] LaTeXStrings v1.4.0 [442fdcdd] Measures v0.3.2 [1dea7af3] OrdinaryDiffEq v6.95.1 [d96e819e] Parameters v0.12.3 [91a5bcdd] Plots v1.40.13 [aea7be01] PrecompileTools v1.3.2 [92933f4c] ProgressMeter v1.10.4 [10745b16] Statistics v1.11.1 [c3572dad] Sundials v4.28.0 [5d786b92] TerminalLoggers v0.1.7 [3a884ed6] UnPack v1.0.2 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_16JFsw/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 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new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl Running test_zeroLL ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 10 | 0.08, 0.08 | 0, 0 | 10 0.100 | 23.3 | 59.5 | 0.08, 0.08 | 59.2, 59.5 | 63.4 0.200 | 60 | 64.6 | 0.08, 0.08 | 58.4, 64.5 | 305 0.300 | 159 | 34.6 | 0.08, 0.08 | 4.72, 34.1 | 672 0.400 | 254 | 2.99 | 0.08, 0.08 | 0.246, 2.91 | 459 0.500 | 257 | 2.93 | 0.08, 0.08 | 0.543, 2.87 | 355 0.600 | 257 | 2.92 | 0.08, 0.08 | 0.683, 2.87 | 324 0.700 | 257 | 2.93 | 0.08, 0.08 | 0.736, 2.87 | 314 0.800 | 257 | 2.93 | 0.08, 0.08 | 0.757, 2.87 | 310 0.900 | 257 | 2.93 | 0.08, 0.08 | 0.76, 2.88 | 310 Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 1.000 | 257 | 2.93 | 0.08, 0.08 | 0.762, 2.88 | 309 Checking result Running test_S_top ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 10 | 0.08, 0.08 | 0, 0 | 10 0.100 | 23.3 | 59.4 | 0.08, 0.08 | 57.9, 58.1 | 62 0.200 | 59.9 | 63.4 | 0.08, 0.08 | 53.8, 55.5 | 302 0.300 | 158 | 33.7 | 0.08, 0.08 | 3.27, 26.3 | 653 0.400 | 253 | 3.02 | 0.08, 0.08 | 0.184, 1.88 | 426 0.500 | 256 | 2.96 | 0.08, 0.08 | 0.43, 1.89 | 315 0.600 | 257 | 2.95 | 0.08, 0.08 | 0.562, 1.9 | 281 0.700 | 257 | 2.95 | 0.08, 0.08 | 0.618, 1.91 | 268 0.800 | 257 | 2.95 | 0.08, 0.08 | 0.646, 1.92 | 262 0.900 | 257 | 2.95 | 0.08, 0.08 | 0.659, 1.92 | 260 Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 1.000 | 257 | 2.95 | 0.08, 0.08 | 0.667, 1.92 | 258 Checking result Running test_Diffusion ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.53, 10.6 | 173 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.51, 11.5 | 174 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.5, 11.9 | 174 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.5, 12 | 174 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.5, 12.1 | 174 Nz = 10, Error = 9.621e-02 Nz = 25, Error = 1.756e-02 Nz = 50, Error = 4.571e-03 Nz = 75, Error = 2.058e-03 Nz = 100, Error = 1.165e-03 Order = 1.918 Checking result Running test_SteadyState ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 5 1.000 | 46.1 | 6.49 | 0.08, 0.08 | 6.49, 6.49 | 2.75e+03 2.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 3.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 4.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 5.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 6.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 7.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 8.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 9.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 10.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 % difference = 0.004475120995842444 Checking result Running test_TimeIntegration ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 0.0228 | 100 | 0.08, 0.08 | 1.46e-85, 0.0717 | 25 Maximum relative error = 1.8393728836940682e-7 Checking result Running test_commandLineArgs ============== Unit Tests: Error During Test at /home/pkgeval/.julia/packages/Biofilm/uK5mS/test/runtests.jl:11 Got exception outside of a @test LoadError: Parameter file should contain a NamedTuple with name `p` Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] process_command_line_args(ARGS::Vector{String}) @ Biofilm ~/.julia/packages/Biofilm/uK5mS/src/parameters.jl:272 [3] julia_main() @ Biofilm ~/.julia/packages/Biofilm/uK5mS/src/Biofilm.jl:19 [4] top-level scope @ ~/.julia/packages/Biofilm/uK5mS/test/test_commandLineArgs.jl:4 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [6] top-level scope @ ~/.julia/packages/Biofilm/uK5mS/test/runtests.jl:16 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [8] macro expansion @ ~/.julia/packages/Biofilm/uK5mS/test/runtests.jl:42 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [13] _start() @ Base ./client.jl:561 in expression starting at /home/pkgeval/.julia/packages/Biofilm/uK5mS/test/test_commandLineArgs.jl:4 Test Summary: | Pass Error Total Time Unit Tests | 5 1 6 1m10.7s RNG of the outermost testset: Random.Xoshiro(0x953bf30739573e4c, 0xf5bcb6bcc51b001e, 0x239412bbf2556264, 0x3df05db358720a0b, 0xd9e904d0af7170e7) ERROR: LoadError: Some tests did not pass: 5 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Biofilm/uK5mS/test/runtests.jl:11 Testing failed after 108.87s ERROR: LoadError: Package Biofilm errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:561 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1437.83s: package tests unexpectedly errored