Package evaluation of openPMD on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T16:23:21.492


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.22s


################################################################################
# Installation
#

Installing openPMD...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [e4c73209] + openPMD v0.3.2
    Updating `~/.julia/environments/v1.12/Manifest.toml`
⌅ [1f15a43c] + CxxWrap v0.14.2
  [ffbed154] + DocStringExtensions v0.9.5
  [692b3bcd] + JLLWrappers v1.7.0
  [da04e1cc] + MPI v0.20.22
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [c03570c3] + Memoize v0.4.4
  [eebad327] + PkgVersion v0.3.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [ae029012] + Requires v1.3.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [e4c73209] + openPMD v0.3.2
⌃ [44b1415a] + ADIOS2_jll v2.10.3+0
  [d43303dc] + Blosc2_jll v201.1800.0+0
  [6e34b625] + Bzip2_jll v1.0.9+0
⌅ [0234f1f7] + HDF5_jll v1.14.3+3
  [e33a78d0] + Hwloc_jll v2.12.1+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [7cb0a576] + MPICH_jll v4.3.1+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1
  [8f1865be] + ZeroMQ_jll v4.3.6+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [477f73a3] + libaec_jll v1.1.3+0
⌅ [3eaa8342] + libcxxwrap_julia_jll v0.11.2+1
  [b53b4c65] + libpng_jll v1.6.50+0
  [a9144af2] + libsodium_jll v1.0.21+0
  [0cbd5639] + openPMD_api_jll v0.16.3+0
  [c7845625] + protoc_jll v105.29.3+0
  [ef860afa] + pugixml_jll v1.14.1+0
  [01fea8cc] + yaml_cpp_jll v0.8.1+0
  [007be453] + zfp_jll v1.0.2+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.5.20
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.13.1+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 10.49s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
ERROR: LoadError: The following 2 direct dependencies failed to precompile:

openPMD 

Failed to precompile openPMD [e4c73209-6c8c-4213-807b-38d671e094ab] to "/home/pkgeval/.julia/compiled/v1.12/openPMD/jl_elwvWi".
C++ exception while wrapping module StdLib: invalid subtyping in definition of StdString with supertype CppBasicString
ERROR: LoadError: invalid subtyping in definition of StdString with supertype CppBasicString
Stacktrace:
  [1] register_julia_module
    @ ~/.julia/packages/CxxWrap/5IZvn/src/CxxWrap.jl:393 [inlined]
  [2] readmodule(so_path_cb::typeof(CxxWrap.StdLib.get_libcxxwrap_julia_stl_path), funcname::Symbol, m::Module, flags::UInt32)
    @ CxxWrap.CxxWrapCore ~/.julia/packages/CxxWrap/5IZvn/src/CxxWrap.jl:751
  [3] wrapmodule(so_path_cb::Function, funcname::Symbol, m::Module, flags::UInt32)
    @ CxxWrap.CxxWrapCore ~/.julia/packages/CxxWrap/5IZvn/src/CxxWrap.jl:761
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:306
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2991
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
  [9] include_string
    @ ./loading.jl:2847 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [11] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/StdLib.jl:1
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/CxxWrap.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile CxxWrap [1f15a43c-97ca-5a2a-ae31-89f07a497df4] to "/home/pkgeval/.julia/compiled/v1.12/CxxWrap/jl_HKgp5g".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3278
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2647
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] #invokelatest_gr#232
    @ ./reflection.jl:1282 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1274 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3849
 [10] maybe_cachefile_lock
    @ ./loading.jl:3846 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2633
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2461
 [13] macro expansion
    @ ./loading.jl:2389 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2354
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2330
 [17] top-level scope
    @ ~/.julia/packages/openPMD/1A9D7/src/openPMD.jl:3
 [18] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2991
 [20] top-level scope
    @ stdin:5
 [21] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
 [23] include_string
    @ ./loading.jl:2847 [inlined]
 [24] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [25] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/openPMD/1A9D7/src/openPMD.jl:1
in expression starting at stdin:5
CxxWrap 

Failed to precompile CxxWrap [1f15a43c-97ca-5a2a-ae31-89f07a497df4] to "/home/pkgeval/.julia/compiled/v1.12/CxxWrap/jl_V8bNd3".
C++ exception while wrapping module StdLib: invalid subtyping in definition of StdString with supertype CppBasicString
ERROR: LoadError: invalid subtyping in definition of StdString with supertype CppBasicString
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/StdLib.jl:1
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/CxxWrap.jl:1
in expression starting at stdin:5
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 59.02s



################################################################################
# Testing
#

     Testing openPMD
      Status `/tmp/jl_hipCxw/Project.toml`
⌅ [1f15a43c] CxxWrap v0.14.2
  [90137ffa] StaticArrays v1.9.13
  [e4c73209] openPMD v0.3.2
  [ade2ca70] Dates v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_hipCxw/Manifest.toml`
⌅ [1f15a43c] CxxWrap v0.14.2
  [ffbed154] DocStringExtensions v0.9.5
  [692b3bcd] JLLWrappers v1.7.0
  [da04e1cc] MPI v0.20.22
  [3da0fdf6] MPIPreferences v0.1.11
  [1914dd2f] MacroTools v0.5.16
  [c03570c3] Memoize v0.4.4
  [eebad327] PkgVersion v0.3.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [ae029012] Requires v1.3.1
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [e4c73209] openPMD v0.3.2
⌃ [44b1415a] ADIOS2_jll v2.10.3+0
  [d43303dc] Blosc2_jll v201.1800.0+0
  [6e34b625] Bzip2_jll v1.0.9+0
⌅ [0234f1f7] HDF5_jll v1.14.3+3
  [e33a78d0] Hwloc_jll v2.12.1+0
  [5ced341a] Lz4_jll v1.10.1+0
  [7cb0a576] MPICH_jll v4.3.1+0
  [f1f71cc9] MPItrampoline_jll v5.5.4+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
⌅ [fe0851c0] OpenMPI_jll v4.1.8+1
  [8f1865be] ZeroMQ_jll v4.3.6+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [477f73a3] libaec_jll v1.1.3+0
⌅ [3eaa8342] libcxxwrap_julia_jll v0.11.2+1
  [b53b4c65] libpng_jll v1.6.50+0
  [a9144af2] libsodium_jll v1.0.21+0
  [0cbd5639] openPMD_api_jll v0.16.3+0
  [c7845625] protoc_jll v105.29.3+0
  [ef860afa] pugixml_jll v1.14.1+0
  [01fea8cc] yaml_cpp_jll v0.8.1+0
  [007be453] zfp_jll v1.0.2+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.5.20
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling packages...
Info Given CxxWrap was explicitly requested, output will be shown live 
C++ exception while wrapping module StdLib: invalid subtyping in definition of StdString with supertype CppBasicString
ERROR: LoadError: invalid subtyping in definition of StdString with supertype CppBasicString
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/StdLib.jl:1
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/CxxWrap.jl:1
in expression starting at stdin:5
           ✗ CxxWrap
  0 dependencies successfully precompiled in 6 seconds. 8 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

CxxWrap 

Failed to precompile CxxWrap [1f15a43c-97ca-5a2a-ae31-89f07a497df4] to "/home/pkgeval/.julia/compiled/v1.12/CxxWrap/jl_4MEWvR".
C++ exception while wrapping module StdLib: invalid subtyping in definition of StdString with supertype CppBasicString
ERROR: LoadError: invalid subtyping in definition of StdString with supertype CppBasicString
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/StdLib.jl:1
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/5IZvn/src/CxxWrap.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/openPMD/1A9D7/test/runtests.jl:2

Testing failed after 24.49s

ERROR: LoadError: Package openPMD errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:321
 [12] _start()
    @ Base ./client.jl:554
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 133.04s: package fails to precompile