Package evaluation of Stheno on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T16:56:36.076 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.53s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.26s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 45.73s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_YTHxZZ/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YTHxZZ/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.37 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9909.2 ms ✓ Documenter 1 dependency successfully precompiled in 10 seconds. 27 already precompiled. Precompiling packages... 2684.0 ms ✓ KernelAbstractions → SparseArraysExt 18027.7 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 24964.7 ms ✓ GPUArrays 72316.1 ms ✓ Zygote 4 dependencies successfully precompiled in 119 seconds. 101 already precompiled. Precompiling packages... 2701.3 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 16712.5 ms ✓ GPUArrays 10419.1 ms ✓ Zygote → ZygoteDistancesExt 3 dependencies successfully precompiled in 31 seconds. 107 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#277` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m43.4s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1142s / 98.4% 31.1GiB / 99.4% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 752s 67.0% 752s 21.5GiB 69.3% 21.5GiB addition 1 457s 40.7% 457s 12.2GiB 39.5% 12.2GiB Standardised Tests (correlated sum) 1 256s 22.8% 256s 6.58GiB 21.2% 6.58GiB adj_ad 9 40.0s 3.6% 4.44s 1.08GiB 3.5% 123MiB adj_fd 9 10.9s 1.0% 1.21s 347MiB 1.1% 38.5MiB Standardised Tests (independent sum) 1 151s 13.5% 151s 5.31GiB 17.1% 5.31GiB adj_ad 9 28.3s 2.5% 3.15s 1.32GiB 4.3% 151MiB adj_fd 9 12.5s 1.1% 1.39s 334MiB 1.1% 37.1MiB Correlated GPs 1 46.2s 4.1% 46.2s 300MiB 0.9% 300MiB Consistency Tests 1 20.7s 1.8% 20.7s 122MiB 0.4% 122MiB Verify mean / kernel numerically 1 3.36s 0.3% 3.36s 47.0MiB 0.1% 47.0MiB Consistency Tests 1 1.76s 0.2% 1.76s 16.3MiB 0.1% 16.3MiB product 1 128s 11.4% 128s 4.35GiB 14.1% 4.35GiB multiply by function 1 75.8s 6.8% 75.8s 2.33GiB 7.5% 2.33GiB Diff Tests 1 44.4s 4.0% 44.4s 1.74GiB 5.6% 1.74GiB adj_ad 9 15.6s 1.4% 1.74s 952MiB 3.0% 106MiB adj_fd 9 5.52s 0.5% 613ms 126MiB 0.4% 14.0MiB Consistency Tests 1 6.26s 0.6% 6.26s 119MiB 0.4% 119MiB multiply by constant 1 52.1s 4.6% 52.1s 2.03GiB 6.5% 2.03GiB Diff Tests 1 38.7s 3.4% 38.7s 1.97GiB 6.4% 1.97GiB adj_ad 9 12.5s 1.1% 1.38s 875MiB 2.8% 97.2MiB adj_fd 9 8.92s 0.8% 991ms 328MiB 1.0% 36.4MiB Consistency Tests 1 3.35s 0.3% 3.35s 22.2MiB 0.1% 22.2MiB GP mul errors 1 13.1ms 0.0% 13.1ms 44.4KiB 0.0% 44.4KiB compose 1 90.0s 8.0% 90.0s 2.56GiB 8.3% 2.56GiB general 1 54.5s 4.9% 54.5s 1.63GiB 5.3% 1.63GiB Diff Tests 1 47.7s 4.2% 47.7s 1.58GiB 5.1% 1.58GiB adj_ad 9 14.5s 1.3% 1.61s 772MiB 2.4% 85.7MiB adj_fd 9 6.00s 0.5% 666ms 124MiB 0.4% 13.8MiB Consistency Tests 1 5.25s 0.5% 5.25s 43.5MiB 0.1% 43.5MiB Stretch 1 28.8s 2.6% 28.8s 831MiB 2.6% 831MiB scalar stretch 1 27.8s 2.5% 27.8s 815MiB 2.6% 815MiB scalar input 1 26.9s 2.4% 26.9s 811MiB 2.6% 811MiB adj_fd 9 10.6s 0.9% 1.18s 313MiB 1.0% 34.8MiB adj_ad 9 3.94s 0.4% 438ms 151MiB 0.5% 16.8MiB vector input 1 970ms 0.1% 970ms 3.69MiB 0.0% 3.69MiB Vector stretch 1 785ms 0.1% 785ms 12.7MiB 0.0% 12.7MiB Matrix stretch 1 125ms 0.0% 125ms 3.38MiB 0.0% 3.38MiB Shift 1 3.70s 0.3% 3.70s 45.0MiB 0.1% 45.0MiB Shift{Vector{Float64}} 1 1.89s 0.2% 1.89s 16.3MiB 0.1% 16.3MiB Shift{Float64} 1 1.81s 0.2% 1.81s 28.8MiB 0.1% 28.8MiB Select 1 1.74s 0.2% 1.74s 35.9MiB 0.1% 35.9MiB evaluation 1 792ms 0.1% 792ms 22.9MiB 0.1% 22.9MiB idx isa Vector 1 552ms 0.0% 552ms 8.49MiB 0.0% 8.49MiB idx isa Integer 1 396ms 0.0% 396ms 4.45MiB 0.0% 4.45MiB Periodic 1 1.27s 0.1% 1.27s 37.6MiB 0.1% 37.6MiB cross 1 29.1s 2.6% 29.1s 1.36GiB 4.4% 1.36GiB block arrays 1 16.3s 1.5% 16.3s 883MiB 2.8% 883MiB Stheno._collect ∘ _mortar 1 13.3s 1.2% 13.3s 732MiB 2.3% 732MiB BlockVector 1 7.01s 0.6% 7.01s 327MiB 1.0% 327MiB adj_fd 1 985ms 0.1% 985ms 13.9MiB 0.0% 13.9MiB adj_ad 1 264ms 0.0% 264ms 17.2MiB 0.1% 17.2MiB BlockMatrix 1 6.31s 0.6% 6.31s 405MiB 1.3% 405MiB adj_fd 1 1.07s 0.1% 1.07s 112MiB 0.4% 112MiB adj_ad 1 62.7ms 0.0% 62.7ms 2.67MiB 0.0% 2.67MiB fdm stuff 1 2.96s 0.3% 2.96s 151MiB 0.5% 151MiB Correctness tests 1 8.63s 0.8% 8.63s 444MiB 1.4% 444MiB Standardised Tests 1 4.19s 0.4% 4.19s 60.7MiB 0.2% 60.7MiB gp 1 210s 18.7% 210s 5.01GiB 16.2% 5.01GiB adj_ad 2 23.0s 2.0% 11.5s 0.97GiB 3.1% 495MiB sparse gp 1 19.9s 1.8% 19.9s 418MiB 1.3% 418MiB SparseFiniteGP inference 1 14.3s 1.3% 14.3s 283MiB 0.9% 283MiB SparseFiniteGP methods 1 5.12s 0.5% 5.12s 130MiB 0.4% 130MiB SparseFiniteGP Constructors 1 407ms 0.0% 407ms 4.61MiB 0.0% 4.61MiB gp 1 14.6s 1.3% 14.6s 275MiB 0.9% 275MiB GP 1 14.3s 1.3% 14.3s 272MiB 0.9% 272MiB independent GPs 1 299ms 0.0% 299ms 2.90MiB 0.0% 2.90MiB wrapped AbstractGP 1 14.3ms 0.0% 14.3ms 314KiB 0.0% 314KiB adj_fd 2 3.26s 0.3% 1.63s 45.3MiB 0.1% 22.6MiB derived_gp 1 166μs 0.0% 166μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 108s 9.6% 108s 2.50GiB 8.1% 2.50GiB Zygote 1 21.1s 1.9% 21.1s 1.03GiB 3.3% 1.03GiB External Consistency 1 11.4s 1.0% 11.4s 109MiB 0.3% 109MiB nested gppp 1 11.2s 1.0% 11.2s 94.5MiB 0.3% 94.5MiB split 1 496ms 0.0% 496ms 13.0MiB 0.0% 13.0MiB gppp macro 1 47.8ms 0.0% 47.8ms 626KiB 0.0% 626KiB doctests 1 44.6s 4.0% 44.6s 1.70GiB 5.5% 1.70GiB BlockData 1 8.44s 0.8% 8.44s 293MiB 0.9% 293MiB vcat(::GPPPInput...) 1 2.64s 0.2% 2.64s 111MiB 0.4% 111MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1315.22s PkgEval succeeded after 1393.65s