Package evaluation of SIRUS on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-15T00:03:10.494 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.74s ################################################################################ # Installation # Installing SIRUS... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [cdeec39e] + SIRUS v2.0.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.19.0 [a9b6321e] + Atomix v1.1.1 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [324d7699] + CategoricalArrays v0.10.8 [af321ab8] + CategoricalDistributions v0.1.15 [d360d2e6] + ChainRulesCore v1.25.2 [3da002f7] + ColorTypes v0.12.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.2 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.4 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.37 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v1.0.1 [d3d80556] + LineSearches v7.4.0 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [a7f614a8] + MLJBase v1.8.1 [6ee0df7b] + MLJLinearModels v0.10.1 [e80e1ace] + MLJModelInterface v1.11.1 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [872c559c] + NNlib v0.9.30 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [cdeec39e] + SIRUS v2.0.1 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [c062fc1d] + StatisticalMeasuresBase v0.1.2 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.84 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 4.69s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 Precompiling package dependencies... Precompilation completed after 347.27s ################################################################################ # Testing # Testing SIRUS Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_nSYNQq/Project.toml` [336ed68f] + CSV v0.10.15 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.0 [7806a523] + DecisionTree v0.12.4 [e30172f5] + Documenter v1.14.1 [eb30cadb] + MLDatasets v0.7.18 ⌃ [a7f614a8] ↓ MLJBase v1.8.1 ⇒ v1.7.0 [c6f25543] + MLJDecisionTreeInterface v0.4.2 ⌅ [6ee0df7b] ↓ MLJLinearModels v0.10.1 ⇒ v0.9.2 [72560011] + MLJTestInterface v0.2.8 [54119dfa] + MLJXGBoostInterface v0.3.12 ⌅ [6f49c342] + RCall v0.13.18 [cdeec39e] + SIRUS v2.0.1 [860ef19b] + StableRNGs v1.0.3 ⌅ [a19d573c] + StatisticalMeasures v0.1.7 Updating `/tmp/jl_nSYNQq/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [a963bdd2] + AtomsBase v0.5.1 [ab4f0b2a] + BFloat16s v0.5.1 [d1d4a3ce] + BitFlags v0.1.9 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [46823bd8] + Chemfiles v0.10.42 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.30.0 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [8f4d0f93] + Conda v1.10.2 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.0 [7806a523] + DecisionTree v0.12.4 [e30172f5] + Documenter v1.14.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [92fee26a] + GZip v0.6.2 [d7ba0133] + Git v1.4.0 [c27321d9] + Glob v1.3.1 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [b5f81e59] + IOCapture v0.2.5 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [4e3cecfd] + ImageShow v0.3.8 [842dd82b] + InlineStrings v1.4.4 [7d512f48] + InternedStrings v0.7.0 [033835bb] + JLD2 v0.5.15 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [0e77f7df] + LazilyInitializedFields v1.3.0 [8cdb02fc] + LazyModules v0.3.1 ⌅ [92ad9a40] ↓ LearnAPI v1.0.1 ⇒ v0.1.0 [e6f89c97] + LoggingExtras v1.1.0 [23992714] + MAT v0.10.7 [eb30cadb] + MLDatasets v0.7.18 ⌃ [a7f614a8] ↓ MLJBase v1.8.1 ⇒ v1.7.0 [c6f25543] + MLJDecisionTreeInterface v0.4.2 ⌅ [6ee0df7b] ↓ MLJLinearModels v0.10.1 ⇒ v0.9.2 [72560011] + MLJTestInterface v0.2.8 [54119dfa] + MLJXGBoostInterface v0.3.12 [3da0fdf6] + MPIPreferences v0.1.11 [dbb5928d] + MappedArrays v0.4.2 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [e94cdb99] + MosaicViews v0.3.4 [15e1cf62] + NPZ v0.4.3 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [65ce6f38] + PackageExtensionCompat v1.0.2 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [fbb45041] + Pickle v0.3.6 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [6f49c342] + RCall v0.13.18 [2792f1a3] + RegistryInstances v0.1.0 [cdeec39e] + SIRUS v2.0.1 [6e75b9c4] + ScikitLearnBase v0.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a0a7dd2c] + SparseMatricesCSR v0.6.9 [860ef19b] + StableRNGs v1.0.3 [cae243ae] + StackViews v0.1.2 ⌅ [a19d573c] + StatisticalMeasures v0.1.7 [3eaba693] + StatsModels v0.7.4 [4db3bf67] + StridedViews v0.4.1 [69024149] + StringEncodings v0.3.7 [856f2bd8] + StructTypes v1.11.0 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.23.1 [a7773ee8] + UnitfulAtomic v1.0.0 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [1b915085] + WinReg v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [009559a3] + XGBoost v2.5.1 [a5390f91] + ZipFile v0.10.1 [4ee394cb] + CUDA_Driver_jll v12.9.0+0 [76a88914] + CUDA_Runtime_jll v0.18.0+0 [78a364fa] + Chemfiles_jll v0.10.4+0 [2e619515] + Expat_jll v2.6.5+0 [f8c6e375] + Git_jll v2.50.0+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [9bd350c2] + OpenSSH_jll v10.0.1+0 [a5c6f535] + XGBoost_jll v2.0.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_nSYNQq/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [7806a523] DecisionTree v0.12.4 [e30172f5] Documenter v1.14.1 [eb30cadb] MLDatasets v0.7.18 ⌃ [a7f614a8] MLJBase v1.7.0 [c6f25543] MLJDecisionTreeInterface v0.4.2 ⌅ [6ee0df7b] MLJLinearModels v0.9.2 [e80e1ace] MLJModelInterface v1.11.1 [72560011] MLJTestInterface v0.2.8 [54119dfa] MLJXGBoostInterface v0.3.12 ⌅ [6f49c342] RCall v0.13.18 [cdeec39e] SIRUS v2.0.1 [860ef19b] StableRNGs v1.0.3 ⌅ [a19d573c] StatisticalMeasures v0.1.7 [10745b16] Statistics v1.11.1 [bd369af6] Tables v1.12.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_nSYNQq/Manifest.toml` [47edcb42] ADTypes v1.15.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.19.0 [a9b6321e] Atomix v1.1.1 [a963bdd2] AtomsBase v0.5.1 [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [d360d2e6] ChainRulesCore v1.25.2 [46823bd8] Chemfiles v0.10.42 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.2 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [d7ba0133] Git v1.4.0 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [4e3cecfd] ImageShow v0.3.8 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.4 [7d512f48] InternedStrings v0.7.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.37 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [8cdb02fc] LazyModules v0.3.1 ⌅ [92ad9a40] LearnAPI v0.1.0 [d3d80556] LineSearches v7.4.0 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [23992714] MAT v0.10.7 [c2834f40] MLCore v1.0.0 [eb30cadb] MLDatasets v0.7.18 ⌃ [a7f614a8] MLJBase v1.7.0 [c6f25543] MLJDecisionTreeInterface v0.4.2 ⌅ [6ee0df7b] MLJLinearModels v0.9.2 [e80e1ace] MLJModelInterface v1.11.1 [72560011] MLJTestInterface v0.2.8 [54119dfa] MLJXGBoostInterface v0.3.12 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [d41bc354] NLSolversBase v7.10.0 [872c559c] NNlib v0.9.30 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [65ce6f38] PackageExtensionCompat v1.0.2 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [fbb45041] Pickle v0.3.6 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter 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LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [a5c6f535] XGBoost_jll v2.0.1+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 5926.5 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1 dependency successfully precompiled in 6 seconds. 11 already precompiled. Precompiling packages... 1240.1 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1 dependency successfully precompiled in 1 seconds. 16 already precompiled. Precompiling packages... 36892.1 ms ✓ ImageCore 6040.3 ms ✓ Pickle 98487.9 ms ✓ DataFrames 54167.6 ms ✓ JLD2 46786.7 ms ✓ MLUtils 4337.4 ms ✓ ImageBase 9455.6 ms ✓ BangBang → BangBangDataFramesExt 7970.4 ms ✓ Transducers → TransducersDataFramesExt 9801.9 ms ✓ ImageShow 44014.8 ms ✓ MLDatasets 10 dependencies successfully precompiled in 322 seconds. 197 already precompiled. Precompiling packages... 106515.3 ms ✓ DataFrames 1 dependency successfully precompiled in 108 seconds. 34 already precompiled. Precompiling packages... 9584.8 ms ✓ BangBang → BangBangDataFramesExt 1 dependency successfully precompiled in 11 seconds. 47 already precompiled. Precompiling packages... 7577.8 ms ✓ Transducers → TransducersDataFramesExt 1 dependency successfully precompiled in 9 seconds. 63 already precompiled. Precompiling packages... 1981.7 ms ✓ DecisionTree 1 dependency successfully precompiled in 2 seconds. 5 already precompiled. Precompiling packages... 4831.0 ms ✓ LearnAPI 3776.5 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 3931.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 10493.0 ms ✓ Distributions 3383.0 ms ✓ NNlib → NNlibSpecialFunctionsExt 19560.0 ms ✓ StatisticalMeasuresBase 5621.6 ms ✓ Distributions → DistributionsTestExt 6254.7 ms ✓ Distributions → DistributionsChainRulesCoreExt 10998.1 ms ✓ ScientificTypes 10199.6 ms ✓ CategoricalDistributions 23649.4 ms ✓ MLJBase 11 dependencies successfully precompiled in 111 seconds. 136 already precompiled. Precompiling packages... 8266.8 ms ✓ MLJDecisionTreeInterface 1 dependency successfully precompiled in 8 seconds. 28 already precompiled. Precompiling packages... 2572.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 5661.2 ms ✓ NLSolversBase 8300.3 ms ✓ LineSearches 13076.5 ms ✓ Optim 13252.0 ms ✓ MLJLinearModels 5 dependencies successfully precompiled in 46 seconds. 77 already precompiled. Precompiling packages... 4816.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3845.9 ms ✓ NNlib → NNlibForwardDiffExt 2 dependencies successfully precompiled in 9 seconds. 49 already precompiled. Precompiling packages... 19566.1 ms ✓ MLJTestInterface 1 dependency successfully precompiled in 23 seconds. 163 already precompiled. Precompiling packages... 8108.7 ms ✓ XGBoost 10873.2 ms ✓ MLJXGBoostInterface 2 dependencies successfully precompiled in 19 seconds. 59 already precompiled. Precompiling packages... 1128.1 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. Precompiling packages... 49650.3 ms ✓ StatisticalMeasures 12443.4 ms ✓ StatisticalMeasures → ScientificTypesExt 2 dependencies successfully precompiled in 66 seconds. 137 already precompiled. Precompiling packages... 14400.2 ms ✓ MLJBase → DefaultMeasuresExt 1 dependency successfully precompiled in 18 seconds. 149 already precompiled. Precompiling packages... 22421.0 ms ✓ SIRUS 1 dependency successfully precompiled in 27 seconds. 185 already precompiled. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/eoWm2/src/utilities/utilities.jl:665 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time docs | 30 30 1m19.2s Test Summary: | Pass Total Time empiricalquantiles | 6 6 2.9s Test Summary: | Pass Total Time forest | 110 110 3.2s Test Summary: | Pass Total Time classification | 16 16 1m23.0s Test Summary: | Pass Total Time regression | 4 4 9.8s Test Summary: | Pass Total Time rules | 15 15 1m34.0s Test Summary: | Pass Total Time ruleshow | 7 7 1.8s Test Summary: | Pass Total Time dependent | 1039 1039 3.4s Test Summary: | Pass Total Time weights | 3 3 0.8s Test Summary: | Pass Total Time importance | 9 9 2.7s Precompiling packages... 5801.9 ms ✓ StatsModels 21823.9 ms ✓ RCall 2 dependencies successfully precompiled in 29 seconds. 78 already precompiled. rcall: Error During Test at /home/pkgeval/.julia/packages/SIRUS/6Paa4/test/runtests.jl:44 Got exception outside of a @test LoadError: REvalError: Error in library("sirus") : there is no package called ‘sirus’ in expression starting at /home/pkgeval/.julia/packages/SIRUS/6Paa4/test/rcall.jl:39 Test Summary: | Error Total Time rcall | 1 1 46.2s RNG of the outermost testset: Random.Xoshiro(0x257ec8315bcad944, 0x1ff47e14e91a1c58, 0xd66be709097bd7e4, 0x70efa4bcdfbcd6c1, 0xcc0546c764ae4507) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SIRUS/6Paa4/test/runtests.jl:43 Testing failed after 1326.61s ERROR: LoadError: Package SIRUS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1730.47s: package tests unexpectedly errored