Package evaluation of SBMLImporter on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-15T03:27:54.953 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.78s ################################################################################ # Installation # Installing SBMLImporter... Resolving package versions... Installed StatsFuns ──────────────────────── v1.5.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed OffsetArrays ───────────────────── v1.17.0 Installed Accessors ──────────────────────── v0.1.42 Installed Preferences ────────────────────── v1.4.3 Installed MutableArithmetics ─────────────── v1.6.4 Installed Unitful ────────────────────────── v1.23.1 Installed PDMats ─────────────────────────── v0.11.35 Installed DomainSets ─────────────────────── v0.7.15 Installed TimerOutputs ───────────────────── v0.5.29 Installed FindFirstFunctions ─────────────── v1.4.1 Installed NonlinearSolve ─────────────────── v4.9.0 Installed JuliaFormatter ─────────────────── v2.1.2 Installed SciMLJacobianOperators ─────────── v0.1.6 Installed EnumX ──────────────────────────── v1.0.5 Installed StaticArrays ───────────────────── v1.9.13 Installed Bijections ─────────────────────── v0.2.2 Installed Polyester ──────────────────────── v0.7.18 Installed MaybeInplace ───────────────────── v0.1.4 Installed RecursiveArrayTools ────────────── v3.34.1 Installed SBML_jll ───────────────────────── v5.20.1+0 Installed FunctionWrappers ───────────────── v1.1.3 Installed IntelOpenMP_jll ────────────────── v2025.0.4+0 Installed Missings ───────────────────────── v1.2.0 Installed Static ─────────────────────────── v1.2.0 Installed Statistics ─────────────────────── v1.11.1 Installed RandomNumbers ──────────────────── v1.6.0 Installed FiniteDiff ─────────────────────── v2.27.0 Installed Tricks ─────────────────────────── v0.1.10 Installed MuladdMacro ────────────────────── v0.2.4 Installed SIMDTypes ──────────────────────── v0.1.0 Installed ComponentArrays ────────────────── v0.15.28 Installed IrrationalConstants ────────────── v0.2.4 Installed FastPower ──────────────────────── v1.1.3 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed Functors ───────────────────────── v0.5.2 Installed CpuId ──────────────────────────── v0.3.1 Installed MultivariatePolynomials ────────── v0.5.9 Installed DiffEqBase ─────────────────────── v6.177.2 Installed SciMLBase ──────────────────────── v2.103.0 Installed PtrArrays ──────────────────────── v1.3.0 Installed CompositeTypes ─────────────────── v0.1.4 Installed NonlinearSolveQuasiNewton ──────── v1.6.0 Installed ADTypes ────────────────────────── v1.15.0 Installed BracketingNonlinearSolve ───────── v1.3.0 Installed SpecialFunctions ───────────────── v2.5.1 Installed Symbolics ──────────────────────── v6.44.0 Installed LinearSolve ────────────────────── v3.18.2 Installed Catalyst ───────────────────────── v15.0.8 Installed IfElse ─────────────────────────── v0.1.1 Installed SimpleNonlinearSolve ───────────── v2.5.0 Installed LineSearch ─────────────────────── v0.1.4 Installed NonlinearSolveSpectralMethods ──── v1.2.0 Installed JuliaSyntax ────────────────────── v0.4.10 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed NaNMath ────────────────────────── v1.1.3 Installed StaticArraysCore ───────────────── v1.4.3 Installed CommonMark ─────────────────────── v0.9.1 Installed ThreadingUtilities ─────────────── v0.5.5 Installed ManualMemory ───────────────────── v0.1.8 Installed NLSolversBase ──────────────────── v7.10.0 Installed SparseMatrixColorings ──────────── v0.4.21 Installed Random123 ──────────────────────── v1.7.1 Installed JumpProcesses ──────────────────── v9.16.1 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed CommonSubexpressions ───────────── v0.3.1 Installed LazyArrays ─────────────────────── v2.6.1 Installed DataStructures ─────────────────── v0.18.22 Installed ExprTools ──────────────────────── v0.1.10 Installed SBMLImporter ───────────────────── v3.0.3 Installed Graphs ─────────────────────────── v1.13.0 Installed StatsAPI ───────────────────────── v1.7.1 Installed MLStyle ────────────────────────── v0.4.17 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Compat ─────────────────────────── v4.17.0 Installed Glob ───────────────────────────── v1.3.1 Installed StaticArrayInterface ───────────── v1.8.0 Installed ArrayLayouts ───────────────────── v1.11.1 Installed DispatchDoctor ─────────────────── v0.4.26 Installed StatsBase ──────────────────────── v0.34.5 Installed DynamicPolynomials ─────────────── v0.6.2 Installed SciMLStructures ────────────────── v1.7.0 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed DiffRules ──────────────────────── v1.15.1 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed oneTBB_jll ─────────────────────── v2022.0.0+0 Installed TableTraits ────────────────────── v1.0.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed PositiveFactorizations ─────────── v0.2.4 Installed DiffResults ────────────────────── v1.1.0 Installed Inflate ────────────────────────── v0.1.5 Installed PrettyTables ───────────────────── v2.4.0 Installed SciMLOperators ─────────────────── v1.3.1 Installed NonlinearSolveBase ─────────────── v1.12.0 Installed Format ─────────────────────────── v1.3.7 Installed MKL_jll ────────────────────────── v2025.0.1+1 Installed Setfield ───────────────────────── v1.1.2 Installed JLLWrappers ────────────────────── v1.7.0 Installed DiffEqCallbacks ────────────────── v4.8.0 Installed ExproniconLite ─────────────────── v0.10.14 Installed ModelingToolkit ────────────────── v9.82.0 Installed EnzymeCore ─────────────────────── v0.8.12 Installed NonlinearSolveFirstOrder ───────── v1.5.0 Installed SymbolicLimits ─────────────────── v0.2.2 Installed ConstructionBase ───────────────── v1.6.0 Installed DataValueInterfaces ────────────── v1.0.0 Installed OrderedCollections ─────────────── v1.8.1 Installed AbstractTrees ──────────────────── v0.4.5 Installed ChainRulesCore ─────────────────── v1.25.2 Installed FastClosures ───────────────────── v0.3.2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed Combinatorics ──────────────────── v1.0.3 Installed Reexport ───────────────────────── v1.2.2 Installed ArrayInterface ─────────────────── v7.19.0 Installed LineSearches ───────────────────── v7.4.0 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed CompositionsBase ───────────────── v0.1.2 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed AliasTables ────────────────────── v1.1.3 Installed LogExpFunctions ────────────────── v0.3.29 Installed MacroTools ─────────────────────── v0.5.16 Installed UnPack ─────────────────────────── v1.0.2 Installed InverseFunctions ───────────────── v0.1.17 Installed CommonSolve ────────────────────── v0.2.4 Installed SimpleTraits ───────────────────── v0.9.4 Installed DocStringExtensions ────────────── v0.9.5 Installed GPUArraysCore ──────────────────── v0.2.0 Installed DifferentiationInterface ───────── v0.6.54 Installed SCCNonlinearSolve ──────────────── v1.3.1 Installed TaskLocalValues ────────────────── v0.1.3 Installed Crayons ────────────────────────── v4.1.1 Installed Adapt ──────────────────────────── v4.3.0 Installed StrideArraysCore ───────────────── v0.5.7 Installed XML2_jll ───────────────────────── v2.13.6+1 Installed Rmath ──────────────────────────── v0.8.0 Installed IntegerMathUtils ───────────────── v0.1.3 Installed IntervalSets ───────────────────── v0.7.11 Installed Krylov ─────────────────────────── v0.10.1 Installed SBML ───────────────────────────── v1.6.0 Installed RuntimeGeneratedFunctions ──────── v0.5.15 Installed Latexify ───────────────────────── v0.16.8 Installed Jieko ──────────────────────────── v0.2.1 Installed Tables ─────────────────────────── v1.12.1 Installed CPUSummary ─────────────────────── v0.2.6 Installed Moshi ──────────────────────────── v0.3.7 Installed DataAPI ────────────────────────── v1.16.0 Installed TermInterface ──────────────────── v2.0.0 Installed Primes ─────────────────────────── v0.5.7 Installed ConcreteStructs ────────────────── v0.2.3 Installed SymbolicUtils ──────────────────── v3.29.0 Installed Optim ──────────────────────────── v1.13.2 Installed RecipesBase ────────────────────── v1.3.4 Installed TruncatedStacktraces ───────────── v1.4.0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed URIs ───────────────────────────── v1.6.1 Installed BlockArrays ────────────────────── v1.7.0 Installed PrecompileTools ────────────────── v1.3.2 Installed PoissonRandom ──────────────────── v0.4.5 Installed Unityper ───────────────────────── v0.1.6 Installed WeakValueDicts ─────────────────── v0.1.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed TestItems ──────────────────────── v1.0.0 Installed SymbolicIndexingInterface ──────── v0.3.41 Installed ForwardDiff ────────────────────── v0.10.38 Installed ResettableStacks ───────────────── v1.1.1 Installed FastBroadcast ──────────────────── v0.3.5 Installed Requires ───────────────────────── v1.3.1 Installed Parameters ─────────────────────── v0.12.3 Installed ReactionNetworkImporters ───────── v0.16.1 Installed QuadGK ─────────────────────────── v2.11.2 Installed FillArrays ─────────────────────── v1.13.0 Installed SortingAlgorithms ──────────────── v1.2.1 Installed StringManipulation ─────────────── v0.4.1 Installed DynamicQuantities ──────────────── v1.8.0 Installed Distributions ──────────────────── v0.25.120 Installing 6 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.5 MiB Installed artifact SBML 5.8 MiB Updating `~/.julia/environments/v1.12/Project.toml` [210efffb] + SBMLImporter v3.0.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.0 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.6 [479239e8] + Catalyst v15.0.8 [d360d2e6] + ChainRulesCore v1.25.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [861a8166] + Combinatorics v1.0.3 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.17.0 [b0b7db55] + ComponentArrays v0.15.28 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.177.2 [459566f4] + DiffEqCallbacks v4.8.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.2 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.16.1 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.8 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.18.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.82.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.9.0 [be0214bd] + NonlinearSolveBase v1.12.0 [5959db7a] + NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.6.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.5 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [b4db0fb7] + ReactionNetworkImporters v0.16.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.34.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v3.0.3 [9dfe8606] + SCCNonlinearSolve v1.3.1 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.103.0 [19f34311] + SciMLJacobianOperators v0.1.6 [c0aeaf25] + SciMLOperators v1.3.1 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.5.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.41 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.29.0 [0c5d862f] + Symbolics v6.44.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.23.1 [a7c27f48] + Unityper v0.1.6 [897b6980] + WeakValueDicts v0.1.0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 15.93s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5433.8 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: SBMLImporter Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.12/SBMLImporter/jl_dGGl7l". ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39318, while current world is 39342. Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:48 [7] include(mod::Module, _path::String) @ Base ./Base.jl:305 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [12] include_string @ ./loading.jl:2847 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [14] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 SBMLImporterForwardDiffExt Failed to precompile SBMLImporterForwardDiffExt [3a901708-3c6d-5681-9c1d-d2c6f9668712] to "/home/pkgeval/.julia/compiled/v1.12/SBMLImporterForwardDiffExt/jl_T10aUn". ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39318, while current world is 39342. Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:48 [7] include(mod::Module, _path::String) @ Base ./Base.jl:305 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2991 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [12] include_string @ ./loading.jl:2847 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [14] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.12/SBMLImporter/jl_IJEPH9". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3278 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2647 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3849 [10] maybe_cachefile_lock @ ./loading.jl:3846 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2633 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [13] macro expansion @ ./loading.jl:2389 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [17] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/ext/SBMLImporterForwardDiffExt.jl:4 [18] include(mod::Module, _path::String) @ Base ./Base.jl:305 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [23] include_string @ ./loading.jl:2847 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [25] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/ext/SBMLImporterForwardDiffExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2449.67s ################################################################################ # Testing # Testing SBMLImporter Status `/tmp/jl_pJQrz5/Project.toml` [4c88cf16] Aqua v0.8.13 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [b0b7db55] ComponentArrays v0.15.28 [a93c6f00] DataFrames v1.7.0 [2b5f629d] DiffEqBase v6.177.2 [ccbc3e58] JumpProcesses v9.16.1 ⌅ [961ee093] ModelingToolkit v9.82.0 [6ad6398a] OrdinaryDiffEqBDF v1.6.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.11.0 [aea7be01] PrecompileTools v1.3.2 [b4db0fb7] ReactionNetworkImporters v0.16.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v3.0.3 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.103.0 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.5.1 [f43a241f] Downloads v1.6.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_pJQrz5/Manifest.toml` [47edcb42] ADTypes v1.15.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [e2ed5e7c] Bijections v0.2.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.7.0 [70df07ce] BracketingNonlinearSolve v1.3.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [d360d2e6] ChainRulesCore v1.25.2 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.17.0 [b0b7db55] ComponentArrays v0.15.28 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.177.2 [459566f4] DiffEqCallbacks v4.8.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [8d63f2c5] DispatchDoctor v0.4.26 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.15 [7c1d4256] DynamicPolynomials v0.6.2 [06fc5a27] DynamicQuantities v1.8.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [64ca27bc] FindFirstFunctions v1.4.1 [6a86dc24] FiniteDiff v2.27.0 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.4 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [70703baa] JuliaSyntax v0.4.10 [ccbc3e58] JumpProcesses v9.16.1 [ba0b0d4f] Krylov v0.10.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.8 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.1 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.18.2 [2ab3a3ac] LogExpFunctions v0.3.29 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 ⌅ [961ee093] ModelingToolkit v9.82.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.9.0 [be0214bd] NonlinearSolveBase v1.12.0 [5959db7a] NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.6.0 [26075421] NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [6ad6398a] OrdinaryDiffEqBDF v1.6.0 [bbf590c4] OrdinaryDiffEqCore v1.26.2 [4302a76b] OrdinaryDiffEqDifferentiation v1.10.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.10.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.11.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e409e4f3] PoissonRandom v0.4.5 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.28 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [b4db0fb7] ReactionNetworkImporters v0.16.1 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] 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[7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.41 [19f23fe9] SymbolicLimits v0.2.2 [d1185830] SymbolicUtils v3.29.0 [0c5d862f] Symbolics v6.44.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [1c621080] TestItems v1.0.0 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.10 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.23.1 [a7c27f48] Unityper v0.1.6 [ea10d353] WeakRefStrings v1.4.2 [897b6980] WeakValueDicts v0.1.0 [76eceee3] WorkerUtilities v1.6.1 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [bb12108a] SBML_jll v5.20.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given SBMLImporter was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39318, while current world is 39342. Stacktrace:  [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML)  @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43  [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool)  @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84  [3] load_SBML(path::String)  @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74  [4] macro expansion  @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined]  [5] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]  [6] top-level scope  @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:48  [7] include(mod::Module, _path::String)  @ Base ./Base.jl:305  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2991  [9] top-level scope  @ stdin:5  [10] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2837  [12] include_string  @ ./loading.jl:2847 [inlined]  [13] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:319  [14] _start()  @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 ✗ SBMLImporter ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1463 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #632 at ./asyncevent.jl:359 jfptr_YY.632_46104.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000758c681f7940 Total snapshots: 420. Utilization: 0% ╎420 @Base/asyncevent.jl:359 (::Base.var"#632#633"{FileWatching.Pidfile.var… ╎ 420 @Base/asyncevent.jl:185 _trywait(t::Timer) ╎ 420 @Base/condition.jl:136 wait ╎ 420 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.S… ╎ 420 @Base/task.jl:1199 wait() 419╎ 420 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronize… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_84416.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2476 unknown function (ip: 0x7b2cc99085d3) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 #213 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2416 withenv at ./env.jl:265 #198 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2237 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2087 #194 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2196 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x7b2cc98f6e9c) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2143 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2135 unknown function (ip: 0x7b2cc98f3a29) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 #test#201 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2401 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:490 unknown function (ip: 0x7b2cc98f3661) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 unknown function (ip: 0x7b2cc98eabe8) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 unknown function (ip: 0x7b2cc98e85ff) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2837 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 _include at ./loading.jl:2897 include at ./Base.jl:305 exec_options at ./client.jl:321 _start at ./client.jl:554 jfptr__start_81451.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7b2ccb26d249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b2cb0800010 Total snapshots: 358. Utilization: 0% ╎358 @Base/client.jl:554 _start() ╎ 358 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 358 @Base/Base.jl:305 include(mod::Module, _path::String) ╎ 358 @Base/loading.jl:2897 _include(mapexpr::Function, mod::Module, _pat… ╎ 358 @Base/loading.jl:2837 include_string(mapexpr::typeof(identity), mo… ╎ 358 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 358 @Pkg/src/API.jl:151 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 358 @Pkg/src/API.jl:151 #test#81 ╎ ╎ 358 @Pkg/src/API.jl:152 test ╎ ╎ 358 @Pkg/src/API.jl:152 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 358 @Pkg/src/API.jl:153 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 358 @Pkg/src/API.jl:164 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 358 @Pkg/src/API.jl:490 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 358 @Pkg/src/API.jl:511 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 358 @Pkg/…erations.jl:2313 test ╎ ╎ ╎ 358 @Pkg/…erations.jl:2401 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 358 @Pkg/…rations.jl:2135 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 358 @Pkg/…rations.jl:2143 #sandbox#190 ╎ ╎ ╎ ╎ 358 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 358 @Base/file.jl:895 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 358 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…tions.jl:2196 (::Pkg.Operations.var"#194#19… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…tions.jl:2087 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…tions.jl:2237 (::Pkg.Operations.var"#198#… ╎ ╎ ╎ ╎ ╎ 358 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…ions.jl:2416 (::Pkg.Operations.var"#213… ╎ ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…ons.jl:2476 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…ss.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…ss.jl:694 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…sk.jl:1199 wait() 357╎ ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…sk.jl:1187 poptask(W::Base.Intr… [1463] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/test/aqua.jl:2 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #632 at ./asyncevent.jl:359 jfptr_YY.632_46104.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 2053724 (Pool: 2053491; Big: 233); GC: 5 PkgEval terminated after 2743.63s: test duration exceeded the time limit