Package evaluation of PyQHA on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T13:41:22.151


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.33s


################################################################################
# Installation
#

Installing PyQHA...
   Resolving package versions...
   Installed Conda ── v1.10.2
   Installed PyCall ─ v1.96.4
    Updating `~/.julia/environments/v1.12/Project.toml`
  [5a1273f0] + PyQHA v0.1.1
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [8f4d0f93] + Conda v1.10.2
  [682c06a0] + JSON v0.21.4
  [1914dd2f] + MacroTools v0.5.16
  [69de0a69] + Parsers v2.8.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [438e738f] + PyCall v1.96.4
  [5a1273f0] + PyQHA v0.1.1
  [81def892] + VersionParsing v1.3.0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.5.20
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.13.1+0
  [8e850ede] + nghttp2_jll v1.64.0+1
    Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log`
    Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log`

Installation completed after 47.88s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 46.78s


################################################################################
# Testing
#

     Testing PyQHA
      Status `/tmp/jl_FMQqiw/Project.toml`
  [8f4d0f93] Conda v1.10.2
  [438e738f] PyCall v1.96.4
  [5a1273f0] PyQHA v0.1.1
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_FMQqiw/Manifest.toml`
  [8f4d0f93] Conda v1.10.2
  [682c06a0] JSON v0.21.4
  [1914dd2f] MacroTools v0.5.16
  [69de0a69] Parsers v2.8.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [438e738f] PyCall v1.96.4
  [5a1273f0] PyQHA v0.1.1
  [81def892] VersionParsing v1.3.0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.5.20
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
  [8e850ede] nghttp2_jll v1.64.0+1
     Testing Running tests...
ERROR: LoadError: InitError: PyError (PyImport_ImportModule) <class 'numba.core.errors.TypingError'>
TypingError('Failed in nopython mode pipeline (step: nopython frontend)\n\x1b[1m\x1b[1mUntyped global name \'ho_free_energy\':\x1b[0m \x1b[1m\x1b[1mCannot determine Numba type of <class \'numpy.ufunc\'>\x1b[0m\n\x1b[1m\nFile "../../../../conda/3/x86_64/lib/python3.12/site-packages/qha/single_configuration.py", line 45:\x1b[0m\n\x1b[1mdef free_energy(temperature: Scalar, q_weights: Vector, static_energies: Vector, frequencies: Array3D,\n    <source elided>\n    scaled_q_weights: Vector = q_weights / np.sum(q_weights)\n\x1b[1m    vibrational_energies: Vector = np.dot(ho_free_energy(temperature, frequencies).sum(axis=2), scaled_q_weights)\n\x1b[0m    \x1b[1m^\x1b[0m\x1b[0m\n\x1b[0m\n\x1b[0m\x1b[1mDuring: Pass nopython_type_inference\x1b[0m')
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/qha/calculator.py", line 20, in <module>
    import qha.multi_configurations.different_phonon_dos as different_phonon_dos
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/qha/multi_configurations/different_phonon_dos.py", line 17, in <module>
    from qha.single_configuration import free_energy
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/qha/single_configuration.py", line 20, in <module>
    @jit(float64[:](float64, float64[:], float64[:], float64[:, :, :], boolean), cache=True)
     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/decorators.py", line 232, in wrapper
    disp.compile(sig)
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/dispatcher.py", line 904, in compile
    cres = self._compiler.compile(args, return_type)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/dispatcher.py", line 84, in compile
    raise retval
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/dispatcher.py", line 94, in _compile_cached
    retval = self._compile_core(args, return_type)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/dispatcher.py", line 107, in _compile_core
    cres = compiler.compile_extra(self.targetdescr.typing_context,
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler.py", line 739, in compile_extra
    return pipeline.compile_extra(func)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler.py", line 439, in compile_extra
    return self._compile_bytecode()
           ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler.py", line 505, in _compile_bytecode
    return self._compile_core()
           ^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler.py", line 484, in _compile_core
    raise e
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler.py", line 473, in _compile_core
    pm.run(self.state)
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler_machinery.py", line 367, in run
    raise patched_exception
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler_machinery.py", line 356, in run
    self._runPass(idx, pass_inst, state)
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler_lock.py", line 35, in _acquire_compile_lock
    return func(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler_machinery.py", line 311, in _runPass
    mutated |= check(pss.run_pass, internal_state)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/compiler_machinery.py", line 272, in check
    mangled = func(compiler_state)
              ^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/typed_passes.py", line 112, in run_pass
    typemap, return_type, calltypes, errs = type_inference_stage(
                                            ^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/typed_passes.py", line 91, in type_inference_stage
    infer.build_constraint()
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/typeinfer.py", line 1027, in build_constraint
    self.constrain_statement(inst)
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/typeinfer.py", line 1389, in constrain_statement
    self.typeof_assign(inst)
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/typeinfer.py", line 1464, in typeof_assign
    self.typeof_global(inst, inst.target, value)
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/typeinfer.py", line 1564, in typeof_global
    typ = self.resolve_value_type(inst, gvar.value)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/numba/core/typeinfer.py", line 1485, in resolve_value_type
    raise TypingError(msg, loc=inst.loc)

Stacktrace:
  [1] pyimport(name::String)
    @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558
  [2] __init__()
    @ PyQHA ~/.julia/packages/PyQHA/S6CTK/src/PyQHA.jl:22
  [3] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1411
  [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1399
  [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)
    @ Base ./loading.jl:1287
  [6] _include_from_serialized
    @ ./loading.jl:1246 [inlined]
  [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
    @ Base ./loading.jl:2083
  [8] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2595
  [9] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2461
 [10] macro expansion
    @ ./loading.jl:2389 [inlined]
 [11] macro expansion
    @ ./lock.jl:376 [inlined]
 [12] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2354
 [13] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2330
 [14] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:306
 [15] top-level scope
    @ none:6
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:287
 [18] _start()
    @ Base ./client.jl:554
during initialization of module PyQHA
in expression starting at /home/pkgeval/.julia/packages/PyQHA/S6CTK/test/runtests.jl:1

Testing failed after 16.95s

ERROR: LoadError: Package PyQHA errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:321
 [12] _start()
    @ Base ./client.jl:554
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 197.57s: package tests unexpectedly errored