Package evaluation of PersistenceDiagramsBase on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T11:51:15.868 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.09s ################################################################################ # Installation # Installing PersistenceDiagramsBase... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [b1ad91c1] + PersistenceDiagramsBase v0.1.1 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [34da2185] + Compat v3.47.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [bac558e1] + OrderedCollections v1.8.1 [b1ad91c1] + PersistenceDiagramsBase v0.1.1 [10745b16] + Statistics v1.11.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 0.97s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 124.84s ################################################################################ # Testing # Testing PersistenceDiagramsBase Status `/tmp/jl_3F2FUT/Project.toml` [4c88cf16] Aqua v0.8.13 ⌅ [34da2185] Compat v3.47.0 ⌃ [a93c6f00] DataFrames v1.3.6 [e30172f5] Documenter v1.14.1 [b1ad91c1] PersistenceDiagramsBase v0.1.1 [1bc83da4] SafeTestsets v0.1.0 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_3F2FUT/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [4c88cf16] Aqua v0.8.13 [944b1d66] CodecZlib v0.7.8 ⌅ [34da2185] Compat v3.47.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌃ [a93c6f00] DataFrames v1.3.6 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [59287772] Formatting v0.4.3 [d7ba0133] Git v1.4.0 [b5f81e59] IOCapture v0.2.5 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0e77f7df] LazilyInitializedFields v1.3.0 [d0879d2d] MarkdownAST v0.1.2 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [b1ad91c1] PersistenceDiagramsBase v0.1.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 ⌅ [08abe8d2] PrettyTables v1.3.1 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [a2af1166] SortingAlgorithms v1.2.1 [10745b16] Statistics v1.11.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.50.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.0.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given DataFrames was explicitly requested, output will be shown live  WARNING: method definition for #DataFrame#200 at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/dataframe/dataframe.jl:397 declares type variable T but does not use it. WARNING: method definition for col_ordering at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/abstractdataframe/sort.jl:145 declares type variable O but does not use it. 62856.4 ms ✓ DataFrames 1 dependency successfully precompiled in 64 seconds. 55 already precompiled. 1 dependency had output during precompilation: ┌ DataFrames │ [Output was shown above] └ ┌ Warning: ErrorException should no longer be used to test field access; FieldError should be used instead! │ caller = top-level scope at diagrams.jl:188 └ @ Core ~/.julia/packages/PersistenceDiagramsBase/QiTwq/test/diagrams.jl:188 ┌ Warning: ErrorException should no longer be used to test field access; FieldError should be used instead! │ caller = top-level scope at diagrams.jl:188 └ @ Core ~/.julia/packages/PersistenceDiagramsBase/QiTwq/test/diagrams.jl:188 Test Summary: | Pass Total Time diagrams | 104 104 1m30.1s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") does not declare a compat entry for the following extras: 5-element Vector{Base.PkgId}: Aqua [4c88cf16-eb10-579e-8560-4a9242c79595] DataFrames [a93c6f00-e57d-5684-b7b6-d8193f3e46c0] Documenter [e30172f5-a6a5-5a46-863b-614d45cd2de4] SafeTestsets [1bc83da4-3b8d-516f-aca4-4fe02f6d838f] Test [8dfed614-e22c-5e08-85e1-65c5234f0b40] Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") extras: Test Failed at /home/pkgeval/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("4c88cf16-eb10-579e-8560-4a9242c79595"), "Aqua"), Base.PkgId(Base.UUID("a93c6f00-e57d-5684-b7b6-d8193f3e46c0"), "DataFrames"), Base.PkgId(Base.UUID("e30172f5-a6a5-5a46-863b-614d45cd2de4"), "Documenter"), Base.PkgId(Base.UUID("1bc83da4-3b8d-516f-aca4-4fe02f6d838f"), "SafeTestsets"), Base.PkgId(Base.UUID("8dfed614-e22c-5e08-85e1-65c5234f0b40"), "Test")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:45 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:45 Test Summary: | Pass Fail Total Time aqua | 10 1 11 1m12.6s Method ambiguity | 1 1 8.7s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.0s Stale dependencies | 1 1 9.6s Compat bounds | 3 1 4 12.0s julia | 1 1 0.1s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") deps | 1 1 0.6s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") extras | 1 1 11.3s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") weakdeps | 1 1 0.0s Piracy | 1 1 0.2s Persistent tasks | 1 1 21.8s RNG of the outermost testset: Random.Xoshiro(0x79d38d9070217503, 0x32cd67cb0f224e3e, 0x0051fffbac117fd8, 0xad414beb944d7d7b, 0xd09ed84d07fe4d52) ERROR: LoadError: Some tests did not pass: 10 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PersistenceDiagramsBase/QiTwq/test/runtests.jl:6 Testing failed after 170.93s ERROR: LoadError: Package PersistenceDiagramsBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 322.03s: package has test failures