Package evaluation of PersistenceDiagrams on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T17:42:04.281 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.82s ################################################################################ # Installation # Installing PersistenceDiagrams... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [90b4794c] + PersistenceDiagrams v0.9.9 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [324d7699] + CategoricalArrays v0.10.8 [3da002f7] + ColorTypes v0.12.1 [34da2185] + Compat v4.17.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [e91730f6] + Hungarian v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.11.1 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [90b4794c] + PersistenceDiagrams v0.9.9 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 37.28s ################################################################################ # Testing # Testing PersistenceDiagrams Status `/tmp/jl_mSiqV5/Project.toml` [4c88cf16] Aqua v0.8.13 [34da2185] Compat v4.17.0 [a93c6f00] DataFrames v1.7.0 [e30172f5] Documenter v1.14.1 [e91730f6] Hungarian v0.7.0 [a7f614a8] MLJBase v1.8.1 [e80e1ace] MLJModelInterface v1.11.1 [90b4794c] PersistenceDiagrams v0.9.9 [3cdcf5f2] RecipesBase v1.3.4 [1bc83da4] SafeTestsets v0.1.0 [321657f4] ScientificTypes v3.1.0 [10745b16] Statistics v1.11.1 [fd094767] Suppressor v0.2.8 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_mSiqV5/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [d360d2e6] ChainRulesCore v1.25.2 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.4.0 [076d061b] HashArrayMappedTries v0.2.0 [e91730f6] Hungarian v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.4 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.37 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [92ad9a40] LearnAPI v1.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [a7f614a8] MLJBase v1.8.1 [e80e1ace] MLJModelInterface v1.11.1 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.30 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [90b4794c] PersistenceDiagrams v0.9.9 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [1bc83da4] SafeTestsets v0.1.0 [321657f4] ScientificTypes v3.1.0 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [c062fc1d] StatisticalMeasuresBase v0.1.2 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.50.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... ┌ Warning: ErrorException should no longer be used to test field access; FieldError should be used instead! │ caller = top-level scope at diagrams.jl:188 └ @ Core ~/.julia/packages/PersistenceDiagrams/KQGLj/test/diagrams.jl:188 ┌ Warning: ErrorException should no longer be used to test field access; FieldError should be used instead! │ caller = top-level scope at diagrams.jl:188 └ @ Core ~/.julia/packages/PersistenceDiagrams/KQGLj/test/diagrams.jl:188 Test Summary: | Pass Total Time diagrams | 104 104 28.1s Test Summary: | Pass Total Time matching | 59 59 18.1s Test Summary: | Pass Total Time persistencecurves | 91 91 14.8s Test Summary: | Pass Total Time persistenceimages | 46 46 2.4s Test Summary: | Pass Total Time scitypes | 2 2 0.2s Precompiling packages... 23233.9 ms ✓ NNlib 3154.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 3593.4 ms ✓ Distributions → DistributionsChainRulesCoreExt 6661.0 ms ✓ CategoricalDistributions 2564.7 ms ✓ NNlib → NNlibSpecialFunctionsExt 25480.9 ms ✓ MLUtils 16746.2 ms ✓ StatisticalMeasuresBase 18449.0 ms ✓ MLJBase 8 dependencies successfully precompiled in 102 seconds. 139 already precompiled. Precompiling packages... 9406.0 ms ✓ BangBang → BangBangDataFramesExt 1 dependency successfully precompiled in 11 seconds. 47 already precompiled. Precompiling packages... 5287.1 ms ✓ Transducers → TransducersDataFramesExt 1 dependency successfully precompiled in 6 seconds. 63 already precompiled. ┌ Warning: Skipping infinite intervals └ @ PersistenceDiagrams ~/.julia/packages/PersistenceDiagrams/KQGLj/src/persistencecurves.jl:159 Test Summary: | Pass Total Time mlj | 394 394 2m42.3s Test Summary: | Pass Total Time plotsrecipes | 42 42 8.0s Base.PkgId(Base.UUID("90b4794c-894b-4756-a0f8-5efeb5ddf7ae"), "PersistenceDiagrams") does not declare a compat entry for the following deps: 1-element Vector{Base.PkgId}: Statistics [10745b16-79ce-11e8-11f9-7d13ad32a3b2] Base.PkgId(Base.UUID("90b4794c-894b-4756-a0f8-5efeb5ddf7ae"), "PersistenceDiagrams") deps: Test Failed at /home/pkgeval/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("10745b16-79ce-11e8-11f9-7d13ad32a3b2"), "Statistics")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:41 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:41 Base.PkgId(Base.UUID("90b4794c-894b-4756-a0f8-5efeb5ddf7ae"), "PersistenceDiagrams") does not declare a compat entry for the following extras: 7-element Vector{Base.PkgId}: Aqua [4c88cf16-eb10-579e-8560-4a9242c79595] DataFrames [a93c6f00-e57d-5684-b7b6-d8193f3e46c0] Documenter [e30172f5-a6a5-5a46-863b-614d45cd2de4] MLJBase [a7f614a8-145f-11e9-1d2a-a57a1082229d] SafeTestsets [1bc83da4-3b8d-516f-aca4-4fe02f6d838f] Suppressor [fd094767-a336-5f1f-9728-57cf17d0bbfb] Test [8dfed614-e22c-5e08-85e1-65c5234f0b40] Base.PkgId(Base.UUID("90b4794c-894b-4756-a0f8-5efeb5ddf7ae"), "PersistenceDiagrams") extras: Test Failed at /home/pkgeval/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("4c88cf16-eb10-579e-8560-4a9242c79595"), "Aqua"), Base.PkgId(Base.UUID("a93c6f00-e57d-5684-b7b6-d8193f3e46c0"), "DataFrames"), Base.PkgId(Base.UUID("e30172f5-a6a5-5a46-863b-614d45cd2de4"), "Documenter"), Base.PkgId(Base.UUID("a7f614a8-145f-11e9-1d2a-a57a1082229d"), "MLJBase"), Base.PkgId(Base.UUID("1bc83da4-3b8d-516f-aca4-4fe02f6d838f"), "SafeTestsets"), Base.PkgId(Base.UUID("fd094767-a336-5f1f-9728-57cf17d0bbfb"), "Suppressor"), Base.PkgId(Base.UUID("8dfed614-e22c-5e08-85e1-65c5234f0b40"), "Test")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:45 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:45 Test Summary: | Pass Fail Total Time aqua | 8 2 10 1m15.3s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.0s Stale dependencies | 1 1 6.7s Compat bounds | 2 2 4 9.2s julia | 1 1 0.0s Base.PkgId(Base.UUID("90b4794c-894b-4756-a0f8-5efeb5ddf7ae"), "PersistenceDiagrams") deps | 1 1 9.1s Base.PkgId(Base.UUID("90b4794c-894b-4756-a0f8-5efeb5ddf7ae"), "PersistenceDiagrams") extras | 1 1 0.0s Base.PkgId(Base.UUID("90b4794c-894b-4756-a0f8-5efeb5ddf7ae"), "PersistenceDiagrams") weakdeps | 1 1 0.0s Piracy | 1 1 0.3s Persistent tasks | 1 1 25.7s RNG of the outermost testset: Random.Xoshiro(0x5010116c262c1dfb, 0x01b98dc76e0845aa, 0xd1902b902cf11d10, 0x37b38cb3bed62071, 0xf2f66d7d88d56360) ERROR: LoadError: Some tests did not pass: 8 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PersistenceDiagrams/KQGLj/test/runtests.jl:25 Testing failed after 315.04s ERROR: LoadError: Package PersistenceDiagrams errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 383.1s: package has test failures