Package evaluation of PeriodicGraphEmbeddings on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T13:37:16.625 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.9s ################################################################################ # Installation # Installing PeriodicGraphEmbeddings... Resolving package versions... Installed JLLWrappers ───────────── v1.7.0 Installed ArnoldiMethod ─────────── v0.4.0 Installed StaticArraysCore ──────── v1.4.3 Installed Inflate ───────────────── v0.1.5 Installed PeriodicGraphs ────────── v0.10.3 Installed StaticArrays ──────────── v1.9.13 Installed Preferences ───────────── v1.4.3 Installed PrecompileTools ───────── v1.3.2 Installed Tokenize ──────────────── v0.5.29 Installed OrderedCollections ────── v1.8.1 Installed Statistics ────────────── v1.11.1 Installed Compat ────────────────── v4.17.0 Installed MacroTools ────────────── v0.5.16 Installed DataStructures ────────── v0.18.22 Installed spglib_jll ────────────── v2.4.0+0 Installed PeriodicGraphEmbeddings ─ v0.3.3 Installed Graphs ────────────────── v1.13.0 Installed SimpleTraits ──────────── v0.9.4 Installing 1 artifacts Installed artifact spglib 270.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [f305370e] + PeriodicGraphEmbeddings v0.3.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [34da2185] + Compat v4.17.0 [864edb3b] + DataStructures v0.18.22 [86223c79] + Graphs v1.13.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.0 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v0.3.3 [18c5b727] + PeriodicGraphs v0.10.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [699a6c99] + SimpleTraits v0.9.4 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [0796e94c] + Tokenize v0.5.29 [ac4a9f1e] + spglib_jll v2.4.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 4.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5157.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 268.15s ################################################################################ # Testing # Testing PeriodicGraphEmbeddings Status `/tmp/jl_hdt6UB/Project.toml` ⌅ [4c88cf16] Aqua v0.5.6 [86223c79] Graphs v1.13.0 [f305370e] PeriodicGraphEmbeddings v0.3.3 [18c5b727] PeriodicGraphs v0.10.3 [90137ffa] StaticArrays v1.9.13 [8dfed614] Test v1.11.0 Status `/tmp/jl_hdt6UB/Manifest.toml` ⌅ [4c88cf16] Aqua v0.5.6 [ec485272] ArnoldiMethod v0.4.0 [34da2185] Compat v4.17.0 [864edb3b] DataStructures v0.18.22 [86223c79] Graphs v1.13.0 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.0 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v0.3.3 [18c5b727] PeriodicGraphs v0.10.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [699a6c99] SimpleTraits v0.9.4 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [0796e94c] Tokenize v0.5.29 [ac4a9f1e] spglib_jll v2.4.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... julia: /source/src/gf.c:2748: method_morespecific_via_interferences: Assertion `!ijl_has_empty_intersection(target_method->sig, start_method->sig)' failed. [132] signal 6 (-6): Aborted in expression starting at none:8 unknown function (ip: 0x71798f1a7ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x71798f143394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) method_morespecific_via_interferences at /source/src/gf.c:2748 [inlined] method_morespecific_via_interferences at /source/src/gf.c:2739 ml_matches at /source/src/gf.c:4897 ml_matches at /source/src/gf.c:4746 [inlined] ijl_matching_methods at /source/src/gf.c:3213 [inlined] ijl_matching_methods at /source/src/gf.c:3200 _methods_by_ftype at ./runtime_internals.jl:1406 [inlined] examine at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:2149 #detect_ambiguities#40 at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:2162 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 detect_ambiguities at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:2130 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 test_ambiguities_impl at /home/pkgeval/.julia/packages/Aqua/bqhPD/src/ambiguities.jl:180 unknown function (ip: 0x71798e0756e9) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:287 _start at ./client.jl:554 jfptr__start_81451.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71798f144249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 2787763 (Pool: 2787617; Big: 146); GC: 5 Method ambiguity: Test Failed at /home/pkgeval/.julia/packages/Aqua/bqhPD/src/ambiguities.jl:117 Expression: success(pipeline(cmd; stdout = stdout, stderr = stderr)) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] _test_ambiguities(packages::Vector{Base.PkgId}; color::Nothing, exclude::Vector{Any}, detect_ambiguities_options::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/bqhPD/src/ambiguities.jl:117 [3] _test_ambiguities @ ~/.julia/packages/Aqua/bqhPD/src/ambiguities.jl:90 [inlined] [4] test_ambiguities @ ~/.julia/packages/Aqua/bqhPD/src/ambiguities.jl:27 [inlined] [5] macro expansion @ ~/.julia/packages/Aqua/bqhPD/src/Aqua.jl:96 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [7] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, project_toml_formatting::Bool) @ Aqua ~/.julia/packages/Aqua/bqhPD/src/Aqua.jl:90 Test Summary: | Fail Total Time Method ambiguity | 1 1 19.6s RNG of the outermost testset: Random.Xoshiro(0x1744d9d1d90c80bc, 0x69aedb8911ec4dc1, 0xdbd85aa96e40dd1a, 0x553d57994722af25, 0xf43896ed28088584) ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PeriodicGraphEmbeddings/TUVln/test/runtests.jl:6 Testing failed after 50.2s ERROR: LoadError: Package PeriodicGraphEmbeddings errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 362.58s: package has test failures