Package evaluation of OMOPCommonDataModel on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T10:52:08.549 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.61s ################################################################################ # Installation # Installing OMOPCommonDataModel... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [ba65db9e] + OMOPCommonDataModel v0.1.4 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [ffbed154] + DocStringExtensions v0.8.6 [ba65db9e] + OMOPCommonDataModel v0.1.4 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [458c3c95] + OpenSSL_jll v3.5.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ Unsatisfiable requirements detected for package SortingAlgorithms [a2af1166]: │ SortingAlgorithms [a2af1166] log: │ ├─possible versions are: 0.3.0 - 1.2.1 or uninstalled │ ├─restricted by compatibility requirements with DataFrames [a93c6f00] to versions: 0.3.0 - 0.3.2 │ │ └─DataFrames [a93c6f00] log: │ │ ├─possible versions are: 0.11.7 - 1.7.0 or uninstalled │ │ └─restricted to versions 0.21 by project [caf3b344], leaving only versions: 0.21.0 - 0.21.8 │ │ └─project [caf3b344] log: │ │ ├─possible versions are: 0.0.0 or uninstalled │ │ └─project [caf3b344] is fixed to version 0.0.0 │ └─restricted by julia compatibility requirements to versions: 1.1.0 - 1.2.1 or uninstalled — no versions left │ Stacktrace: │ [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool, err_msg_preamble::String) │ @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1121 │ [2] propagate_constraints! (repeats 2 times) │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1056 [inlined] │ [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; validate_versions::Bool) │ @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1622 │ [4] simplify_graph! (repeats 2 times) │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1621 [inlined] │ [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:527 │ [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1922 │ [7] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1901 [inlined] │ [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) │ @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:417 │ [9] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:389 [inlined] │ [10] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [inlined] │ [11] #resolve#167 │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:423 [inlined] │ [12] resolve │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:422 [inlined] │ [13] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:80 │ [14] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:9 │ [15] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [16] include(mod::Module, _path::String) │ @ Base ./Base.jl:305 │ [17] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:321 │ [18] _start() │ @ Base ./client.jl:554 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 5341.5 ms ✓ OMOPCommonDataModel 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompilation completed after 22.52s ################################################################################ # Testing # Testing OMOPCommonDataModel Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Testing failed after 6.83s ERROR: LoadError: Unsatisfiable requirements detected for package SortingAlgorithms [a2af1166]: SortingAlgorithms [a2af1166] log: ├─possible versions are: 0.3.0 - 1.2.1 or uninstalled ├─restricted by compatibility requirements with DataFrames [a93c6f00] to versions: 0.3.0 - 0.3.2 │ └─DataFrames [a93c6f00] log: │ ├─possible versions are: 0.11.7 - 1.7.0 or uninstalled │ └─restricted to versions 0.21 by project [792234a3], leaving only versions: 0.21.0 - 0.21.8 │ └─project [792234a3] log: │ ├─possible versions are: 0.0.0 or uninstalled │ └─project [792234a3] is fixed to version 0.0.0 └─restricted by julia compatibility requirements to versions: 1.1.0 - 1.2.1 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool, err_msg_preamble::String) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1121 [2] propagate_constraints! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1056 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; validate_versions::Bool) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1622 [4] simplify_graph! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1621 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:527 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1922 [7] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1901 [inlined] [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:417 [9] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:389 [inlined] [10] #up#49 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [inlined] [11] (::Pkg.Operations.var"#198#199"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2227 [12] with_temp_env(fn::Pkg.Operations.var"#198#199"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2087 [13] (::Pkg.Operations.var"#194#195"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2196 [14] mktempdir(fn::Pkg.Operations.var"#194#195"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [15] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [16] #sandbox#190 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2143 [inlined] [17] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2401 [18] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [19] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [20] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [21] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [22] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [23] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [24] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [25] include(mod::Module, _path::String) @ Base ./Base.jl:305 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [27] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 caused by: Unsatisfiable requirements detected for package SortingAlgorithms [a2af1166]: SortingAlgorithms [a2af1166] log: ├─possible versions are: 0.3.0 - 1.2.1 or uninstalled ├─restricted by compatibility requirements with DataFrames [a93c6f00] to versions: 0.3.0 - 0.3.2 │ └─DataFrames [a93c6f00] log: │ ├─possible versions are: 0.11.7 - 1.7.0 or uninstalled │ └─restricted to versions 0.21 by project [792234a3], leaving only versions: 0.21.0 - 0.21.8 │ └─project [792234a3] log: │ ├─possible versions are: 0.0.0 or uninstalled │ └─project [792234a3] is fixed to version 0.0.0 └─restricted by julia compatibility requirements to versions: 1.1.0 - 1.2.1 or uninstalled — no versions left Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool, err_msg_preamble::String) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1121 [2] propagate_constraints! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1056 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; validate_versions::Bool) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1622 [4] simplify_graph! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Resolve/graphtype.jl:1621 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:527 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1922 [7] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1901 [inlined] [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:417 [9] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:389 [inlined] [10] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [inlined] [11] #resolve#167 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:423 [inlined] [12] resolve @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:422 [inlined] [13] (::Pkg.Operations.var"#198#199"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2212 [14] with_temp_env(fn::Pkg.Operations.var"#198#199"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2087 [15] (::Pkg.Operations.var"#194#195"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2196 [16] mktempdir(fn::Pkg.Operations.var"#194#195"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#213#214"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [17] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [18] #sandbox#190 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2143 [inlined] [19] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2401 [20] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [21] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [22] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [23] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [24] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [25] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [26] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [27] include(mod::Module, _path::String) @ Base ./Base.jl:305 [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [29] _start() @ Base ./client.jl:554 PkgEval failed after 53.25s: there were unidentified errors