Package evaluation of OMOPCDMCohortCreator on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T17:01:31.710 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.76s ################################################################################ # Installation # Installing OMOPCDMCohortCreator... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [f525a15e] + OMOPCDMCohortCreator v0.5.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [34da2185] + Compat v4.17.0 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e2ba6199] + ExprTools v0.1.10 ⌅ [cf6cc811] + FunSQL v0.13.2 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [f525a15e] + OMOPCDMCohortCreator v0.5.1 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [54e16d92] + PrettyPrinting v0.4.2 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.21.3 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.67s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 Precompiling package dependencies... Precompilation completed after 50.71s ################################################################################ # Testing # Testing OMOPCDMCohortCreator Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_BGqyvH/Project.toml` ⌅ [cf6cc811] ↓ FunSQL v0.13.2 ⇒ v0.11.2 [b8464e9a] + HealthSampleData v0.0.1 [0f8b85d8] + JSON3 v1.14.3 ⌅ [b1469e29] + OHDSICohortExpressions v0.1.5 [0aa819cd] + SQLite v1.6.1 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_BGqyvH/Manifest.toml` [d1d4a3ce] + BitFlags v0.1.9 [944b1d66] + CodecZlib v0.7.8 [f0e56b4a] + ConcurrentUtilities v2.5.0 [124859b0] + DataDeps v0.7.13 [460bff9d] + ExceptionUnwrapping v0.1.11 ⌅ [cf6cc811] ↓ FunSQL v0.13.2 ⇒ v0.11.2 [cd3eb016] + HTTP v1.10.17 [b8464e9a] + HealthSampleData v0.0.1 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [e6f89c97] + LoggingExtras v1.1.0 [739be429] + MbedTLS v1.1.9 ⌅ [b1469e29] + OHDSICohortExpressions v0.1.5 [4d8831e6] + OpenSSL v1.5.0 [69de0a69] + Parsers v2.8.3 [0aa819cd] + SQLite v1.6.1 [777ac1f9] + SimpleBufferStream v1.2.0 [856f2bd8] + StructTypes v1.11.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [ea10d353] + WeakRefStrings v1.4.2 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [76ed43ae] + SQLite_jll v3.48.0+0 [56ddb016] + Logging v1.11.0 [a63ad114] + Mmap v1.11.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_BGqyvH/Project.toml` [a10d1c49] DBInterface v2.6.1 [a93c6f00] DataFrames v1.7.0 ⌅ [cf6cc811] FunSQL v0.11.2 [b8464e9a] HealthSampleData v0.0.1 [0f8b85d8] JSON3 v1.14.3 ⌅ [b1469e29] OHDSICohortExpressions v0.1.5 [f525a15e] OMOPCDMCohortCreator v0.5.1 [0aa819cd] SQLite v1.6.1 [f269a46b] TimeZones v1.21.3 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_BGqyvH/Manifest.toml` [d1d4a3ce] BitFlags v0.1.9 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.17.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [a10d1c49] DBInterface v2.6.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 ⌅ [cf6cc811] FunSQL v0.11.2 [cd3eb016] HTTP v1.10.17 [b8464e9a] HealthSampleData v0.0.1 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [e6f89c97] LoggingExtras v1.1.0 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 ⌅ [b1469e29] OHDSICohortExpressions v0.1.5 [f525a15e] OMOPCDMCohortCreator v0.5.1 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v2.4.0 [189a3867] Reexport v1.2.2 [0aa819cd] SQLite v1.6.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.21.3 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [ea10d353] WeakRefStrings v1.4.2 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [76ed43ae] SQLite_jll v3.48.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 4414.6 ms ✓ HealthSampleData 1 dependency successfully precompiled in 5 seconds. 36 already precompiled. Precompiling packages... 6817.5 ms ✓ OHDSICohortExpressions 1 dependency successfully precompiled in 7 seconds. 20 already precompiled. [ Info: Eunomia data source is downloaded! [ Info: Global database dialect set to: sqlite [ Info: Global schema set to: main [ Info: cdm_source table generated internally [ Info: location table generated internally [ Info: care_site table generated internally [ Info: concept_ancestor table generated internally [ Info: concept table generated internally [ Info: concept_relationship table generated internally [ Info: condition_era table generated internally [ Info: cost table generated internally [ Info: dose_era table generated internally [ Info: drug_strength table generated internally [ Info: note table generated internally [ Info: cohort_attribute table generated internally [ Info: person table generated internally [ Info: provider table generated internally [ Info: source_to_concept_map table generated internally [ Info: cohort table generated internally [ Info: concept_synonym table generated internally [ Info: visit_occurrence table generated internally [ Info: vocabulary table generated internally [ Info: fact_relationship table generated internally [ Info: domain table generated internally [ Info: drug_era table generated internally [ Info: procedure_occurrence table generated internally [ Info: death table generated internally [ Info: note_nlp table generated internally [ Info: concept_class table generated internally [ Info: device_exposure table generated internally [ Info: payer_plan_period table generated internally [ Info: drug_exposure table generated internally [ Info: observation table generated internally [ Info: relationship table generated internally [ Info: specimen table generated internally [ Info: observation_period table generated internally [ Info: visit_detail table generated internally [ Info: condition_occurrence table generated internally [ Info: measurement table generated internally [ Info: metadata table generated internally Test Summary: | Pass Total Time OMOPCDMCohortCreator | 75 75 1m27.7s Testing OMOPCDMCohortCreator tests passed Testing completed after 209.71s PkgEval succeeded after 285.17s