Package evaluation of NestedGraphs on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T13:02:34.120


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.77s


################################################################################
# Installation
#

Installing NestedGraphs...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [03c36417] + NestedGraphs v0.2.3
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [ec485272] + ArnoldiMethod v0.4.0
  [34da2185] + Compat v4.17.0
  [864edb3b] + DataStructures v0.18.22
  [ffbed154] + DocStringExtensions v0.9.5
  [86223c79] + Graphs v1.13.0
  [d25df0c9] + Inflate v0.1.5
  [1914dd2f] + MacroTools v0.5.16
  [03c36417] + NestedGraphs v0.2.3
  [bac558e1] + OrderedCollections v1.8.1
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [699a6c99] + SimpleTraits v0.9.4
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [8e850b90] + libblastrampoline_jll v5.13.1+0

Installation completed after 1.02s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    MethodError: no method matching prune_manifest(::Pkg.Types.Manifest, ::Vector{UUID})
│    The function `prune_manifest` exists, but no method is defined for this combination of argument types.
│    
│    Closest candidates are:
│      prune_manifest(::Pkg.Types.Manifest, !Matched::Set{UUID})
│       @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1234
│      prune_manifest(!Matched::Pkg.Types.EnvCache)
│       @ Pkg /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1213
│    
│    Stacktrace:
│     [1] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:40
│     [2] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:9
│     [3] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [4] include(mod::Module, _path::String)
│       @ Base ./Base.jl:305
│     [5] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:321
│     [6] _start()
│       @ Base ./client.jl:554
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   6088.3 ms  ✓ NestedGraphs
  1 dependency successfully precompiled in 7 seconds. 34 already precompiled.

Precompilation completed after 20.71s


################################################################################
# Testing
#

     Testing NestedGraphs
        Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function.
    Updating `/tmp/jl_6XFvP7/Project.toml`
  [4c88cf16] ↑ Aqua v0.8.7 ⇒ v0.8.13
  [86223c79] ↑ Graphs v1.11.0 ⇒ v1.13.0
  [c3a54625] ↑ JET v0.9.0 ⇒ v0.10.6
  [626554b9] ↑ MetaGraphs v0.7.2 ⇒ v0.8.0
  [03c36417] ~ NestedGraphs v0.2.2 `~/.julia/packages/NestedGraphs/3fYbM` ⇒ v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [8dfed614] ~ Test ⇒ v1.11.0
    Updating `/tmp/jl_6XFvP7/Manifest.toml`
  [4c88cf16] ↑ Aqua v0.8.7 ⇒ v0.8.13
  [da1fd8a2] ↑ CodeTracking v1.3.5 ⇒ v1.3.9
  [34da2185] ↑ Compat v4.15.0 ⇒ v4.17.0
  [807dbc54] + Compiler v0.1.1
  [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22
  [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5
  [5789e2e9] ↑ FileIO v1.16.3 ⇒ v1.17.0
  [86223c79] ↑ Graphs v1.11.0 ⇒ v1.13.0
  [d25df0c9] ↑ Inflate v0.1.4 ⇒ v0.1.5
  [c3a54625] ↑ JET v0.9.0 ⇒ v0.10.6
⌅ [033835bb] ↑ JLD2 v0.4.48 ⇒ v0.4.54
  [aa1ae85d] ↑ JuliaInterpreter v0.9.31 ⇒ v0.10.3
  [70703baa] + JuliaSyntax v1.0.2
  [6f1432cf] ↑ LoweredCodeUtils v2.4.6 ⇒ v3.4.1
  [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.16
  [626554b9] ↑ MetaGraphs v0.7.2 ⇒ v0.8.0
  [03c36417] ~ NestedGraphs v0.2.2 `~/.julia/packages/NestedGraphs/3fYbM` ⇒ v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1
  [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.2
  [189a3867] - Reexport v1.2.2
  [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1
  [90137ffa] ↑ StaticArrays v1.9.4 ⇒ v1.9.13
  [1e83bf80] ↑ StaticArraysCore v1.4.2 ⇒ v1.4.3
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [3bb67fe8] ↑ TranscodingStreams v0.10.8 ⇒ v0.11.3
  [c8ffd9c3] - MbedTLS_jll v2.28.2+1
  [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2
  [56f22d72] ~ Artifacts ⇒ v1.11.0
  [2a0f44e3] ~ Base64 ⇒ v1.11.0
  [ade2ca70] ~ Dates ⇒ v1.11.0
  [8ba89e20] ~ Distributed ⇒ v1.11.0
  [7b1f6079] ~ FileWatching ⇒ v1.11.0
  [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [76f85450] ~ LibGit2 ⇒ v1.11.0
  [8f399da3] ~ Libdl ⇒ v1.11.0
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [56ddb016] ~ Logging ⇒ v1.11.0
  [d6f4376e] ~ Markdown ⇒ v1.11.0
  [a63ad114] ~ Mmap ⇒ v1.11.0
  [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0
  [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0
  [de0858da] ~ Printf ⇒ v1.11.0
  [3fa0cd96] - REPL
  [9a3f8284] ~ Random ⇒ v1.11.0
  [9e88b42a] ~ Serialization ⇒ v1.11.0
  [1a1011a3] ~ SharedArrays ⇒ v1.11.0
  [6462fe0b] ~ Sockets ⇒ v1.11.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] ~ Test ⇒ v1.11.0
  [cf7118a7] ~ UUIDs ⇒ v1.11.0
  [4ec0a83e] ~ Unicode ⇒ v1.11.0
  [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1
  [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.11.1+1
  [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.0+0
  [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1
  [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.5.20
  [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.1+0
  [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.8.3+2
  [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2
  [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.13.1+0
  [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.64.0+1
  [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
        Test Successfully re-resolved
      Status `/tmp/jl_6XFvP7/Project.toml`
  [4c88cf16] Aqua v0.8.13
  [d091dd56] AttributeGraphs v0.3.0
  [86223c79] Graphs v1.13.0
  [c3a54625] JET v0.10.6
  [626554b9] MetaGraphs v0.8.0
⌃ [fa8bd995] MetaGraphsNext v0.6.0
  [03c36417] NestedGraphs v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [699a6c99] SimpleTraits v0.9.4
  [98d24dd4] TestSetExtensions v3.0.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_6XFvP7/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [4c88cf16] Aqua v0.8.13
  [ec485272] ArnoldiMethod v0.4.0
  [d091dd56] AttributeGraphs v0.3.0
  [da1fd8a2] CodeTracking v1.3.9
  [34da2185] Compat v4.17.0
  [807dbc54] Compiler v0.1.1
  [864edb3b] DataStructures v0.18.22
  [ab62b9b5] DeepDiffs v1.2.0
  [ffbed154] DocStringExtensions v0.9.5
  [5789e2e9] FileIO v1.17.0
  [86223c79] Graphs v1.13.0
  [d25df0c9] Inflate v0.1.5
  [c3a54625] JET v0.10.6
⌅ [033835bb] JLD2 v0.4.54
  [aa1ae85d] JuliaInterpreter v0.10.3
  [70703baa] JuliaSyntax v1.0.2
  [6f1432cf] LoweredCodeUtils v3.4.1
  [1914dd2f] MacroTools v0.5.16
  [626554b9] MetaGraphs v0.8.0
⌃ [fa8bd995] MetaGraphsNext v0.6.0
  [03c36417] NestedGraphs v0.2.3 `~/.julia/packages/NestedGraphs/3fYbM`
  [bac558e1] OrderedCollections v1.8.1
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [ae029012] Requires v1.3.1
  [699a6c99] SimpleTraits v0.9.4
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [98d24dd4] TestSetExtensions v3.0.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.5.20
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.1+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling packages...
   3777.9 ms  ✓ AttributeGraphs
  1 dependency successfully precompiled in 4 seconds. 33 already precompiled.
Precompiling packages...
   3434.5 ms  ✓ NestedGraphs → NestedGraphsAttributeGraphsExt
  1 dependency successfully precompiled in 4 seconds. 36 already precompiled.
Precompiling packages...
           ✗ JLD2
Info Given MetaGraphs was explicitly requested, output will be shown live 
Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_KJB2Cy").

Fatal error:
ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2")
Stacktrace:
  [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2178
  [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2186
  [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing)
    @ Base ./loading.jl:2456
  [4] _require_prelocked
    @ ./loading.jl:2455 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:2453
  [7] require
    @ ./loading.jl:2451 [inlined]
  [8] #37
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined]
  [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock)
    @ Base ./lock.jl:335
 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203
 [11] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
 [12] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
 [13] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
 [14] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
 [15] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
 [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [17] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [18] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [20] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [21] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [22] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
Stacktrace:
  [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71
  [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String)
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66
  [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228
  [4] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
  [5] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
  [6] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
  [7] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
  [8] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
  [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [10] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [11] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [13] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [14] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [15] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:306
 [17] IncludeInto
    @ ./Base.jl:307 [inlined]
 [18] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2991
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
 [24] include_string
    @ ./loading.jl:2847 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [26] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_ERReRt".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3278
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2647
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] #invokelatest_gr#232
    @ ./reflection.jl:1282 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1274 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3849
 [10] maybe_cachefile_lock
    @ ./loading.jl:3846 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2633
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2461
 [13] macro expansion
    @ ./loading.jl:2389 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2354
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2330
 [17] top-level scope
    @ ~/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:3
 [18] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2991
 [20] top-level scope
    @ stdin:5
 [21] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
 [23] include_string
    @ ./loading.jl:2847 [inlined]
 [24] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [25] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:1
in expression starting at stdin:5
           ✗ MetaGraphs
  0 dependencies successfully precompiled in 114 seconds. 51 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

MetaGraphs 

Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.12/MetaGraphs/jl_tcWbdz".
Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_KJB2Cy").

Fatal error:
ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2")
Stacktrace:
  [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2178
  [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)
    @ Base ./loading.jl:2186
  [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing)
    @ Base ./loading.jl:2456
  [4] _require_prelocked
    @ ./loading.jl:2455 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:2453
  [7] require
    @ ./loading.jl:2451 [inlined]
  [8] #37
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined]
  [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock)
    @ Base ./lock.jl:335
 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203
 [11] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
 [12] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
 [13] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
 [14] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
 [15] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
 [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [17] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [18] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [20] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [21] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [22] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
Stacktrace:
  [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71
  [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String)
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66
  [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228
  [4] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]
  [5] action
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]
  [6] load(::String; options::@Kwargs{})
    @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113
  [7] load
    @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]
  [8] #111
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]
  [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)
    @ Base.Filesystem ./file.jl:870
 [10] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:868
 [11] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [13] macro expansion
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]
 [14] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [15] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:306
 [17] IncludeInto
    @ ./Base.jl:307 [inlined]
 [18] top-level scope
    @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2991
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
 [24] include_string
    @ ./loading.jl:2847 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [26] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_ERReRt".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3278
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2647
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] #invokelatest_gr#232
    @ ./reflection.jl:1282 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1274 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3849
 [10] maybe_cachefile_lock
    @ ./loading.jl:3846 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2633
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2461
 [13] macro expansion
    @ ./loading.jl:2389 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2354
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2330
 [17] top-level scope
    @ ~/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:3
 [18] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2991
 [20] top-level scope
    @ stdin:5
 [21] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
 [23] include_string
    @ ./loading.jl:2847 [inlined]
 [24] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [25] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/O0H1e/src/MetaGraphs.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/NestedGraphs/3fYbM/test/runtests.jl:2

Testing failed after 131.93s

ERROR: LoadError: Package NestedGraphs errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:321
 [12] _start()
    @ Base ./client.jl:554
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 176.89s: package fails to precompile