Package evaluation of NeighborhoodApproximationIndex on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T19:40:08.633


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.02s


################################################################################
# Installation
#

Installing NeighborhoodApproximationIndex...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [73dc1408] + NeighborhoodApproximationIndex v0.4.1
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [324d7699] + CategoricalArrays v0.10.8
  [34da2185] + Compat v4.17.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [b4f34e82] + Distances v0.10.12
  [ffbed154] + DocStringExtensions v0.9.5
  [842dd82b] + InlineStrings v1.4.4
⌅ [6d0fbc77] + Intersections v0.2.8
⌅ [b20bd276] + InvertedFiles v0.2.2
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [5d8de97f] + KCenters v0.6.1
  [b964fa9f] + LaTeXStrings v1.4.0
⌅ [7f8f8fb0] + LearnBase v0.3.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
⌃ [9920b226] + MLDataPattern v0.5.4
  [cc2ba9b6] + MLDataUtils v0.5.4
  [66a33bbf] + MLLabelUtils v0.5.7
  [dbb5928d] + MappedArrays v0.4.2
  [e1d29d7a] + Missings v1.2.0
  [73dc1408] + NeighborhoodApproximationIndex v0.4.1
  [bac558e1] + OrderedCollections v1.8.1
  [d96e819e] + Parameters v0.12.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
⌅ [0e966ebe] + SearchModels v0.3.3
  [91c51154] + SentinelArrays v1.4.8
⌅ [053f045d] + SimilaritySearch v0.8.20
  [a2af1166] + SortingAlgorithms v1.2.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3a884ed6] + UnPack v1.0.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [8e850b90] + libblastrampoline_jll v5.13.1+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 3.8s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 233.63s


################################################################################
# Testing
#

     Testing NeighborhoodApproximationIndex
      Status `/tmp/jl_DNSdQD/Project.toml`
⌅ [6d0fbc77] Intersections v0.2.8
⌅ [b20bd276] InvertedFiles v0.2.2
⌅ [5d8de97f] KCenters v0.6.1
  [73dc1408] NeighborhoodApproximationIndex v0.4.1
  [d96e819e] Parameters v0.12.3
⌅ [0e966ebe] SearchModels v0.3.3
⌅ [053f045d] SimilaritySearch v0.8.20
⌅ [2913bbd2] StatsBase v0.33.21
  [ade2ca70] Dates v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_DNSdQD/Manifest.toml`
  [324d7699] CategoricalArrays v0.10.8
  [34da2185] Compat v4.17.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [b4f34e82] Distances v0.10.12
  [ffbed154] DocStringExtensions v0.9.5
  [842dd82b] InlineStrings v1.4.4
⌅ [6d0fbc77] Intersections v0.2.8
⌅ [b20bd276] InvertedFiles v0.2.2
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
⌅ [5d8de97f] KCenters v0.6.1
  [b964fa9f] LaTeXStrings v1.4.0
⌅ [7f8f8fb0] LearnBase v0.3.0
  [2ab3a3ac] LogExpFunctions v0.3.29
⌃ [9920b226] MLDataPattern v0.5.4
  [cc2ba9b6] MLDataUtils v0.5.4
  [66a33bbf] MLLabelUtils v0.5.7
  [dbb5928d] MappedArrays v0.4.2
  [e1d29d7a] Missings v1.2.0
  [73dc1408] NeighborhoodApproximationIndex v0.4.1
  [bac558e1] OrderedCollections v1.8.1
  [d96e819e] Parameters v0.12.3
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
⌅ [0e966ebe] SearchModels v0.3.3
  [91c51154] SentinelArrays v1.4.8
⌅ [053f045d] SimilaritySearch v0.8.20
  [a2af1166] SortingAlgorithms v1.2.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
⌅ [2913bbd2] StatsBase v0.33.21
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [3a884ed6] UnPack v1.0.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
[ Info: ********************* JIT warming *********************
[ Info: creating gold standard
  0.364374 seconds (318.99 k allocations: 17.778 MiB, 99.93% compilation time)
SearchModels> search params iter=0, tol=-1.0, initialpopulation=16, maxpopulation=16, bsize=4, mutbsize=16, crossbsize=8
SearchModels iteration 1> population: 14, bsize: 4, queue: 15, observed: 29, best-error: (visited = (9.0, 9.6, 10.0), radius = (5.655045986175537, 9.084417295455932, 15.82512092590332), recall = 0.9600000000000002, searchtime = 2.17e-6) worst-error: (visited = (5.0, 8.5, 10.0), radius = (5.655045986175537, 8.323925638198853, 15.82512092590332), recall = 0.85, searchtime = 2.013e-6)
SearchModels iteration 2> population: 16, bsize: 4, queue: 9, observed: 38, best-error: (visited = (9.0, 9.6, 10.0), radius = (5.655045986175537, 9.084417295455932, 15.82512092590332), recall = 0.9600000000000002, searchtime = 2.17e-6) worst-error: (visited = (10.0, 10.0, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 1.0, searchtime = 3.25e-6)
SearchModels iteration 3> population: 16, bsize: 4, queue: 10, observed: 48, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (10.0, 10.0, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 1.0, searchtime = 2.3370000000000002e-6)
SearchModels iteration 4> population: 16, bsize: 4, queue: 10, observed: 58, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (9.0, 9.9, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.99, searchtime = 2.1460000000000003e-6)
SearchModels iteration 5> population: 16, bsize: 4, queue: 6, observed: 64, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (9.0, 9.9, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.99, searchtime = 2.407e-6)
SearchModels iteration 6> population: 16, bsize: 4, queue: 8, observed: 72, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.085e-6)
SearchModels iteration 7> population: 16, bsize: 4, queue: 2, observed: 74, best-error: (visited = (9.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.786e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 8> population: 16, bsize: 4, queue: 2, observed: 76, best-error: (visited = (9.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.759e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 9> population: 16, bsize: 4, queue: 1, observed: 77, best-error: (visited = (9.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.786e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 10> population: 16, bsize: 4, queue: 0, observed: 77, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 11> population: 16, bsize: 4, queue: 0, observed: 77, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 12> population: 16, bsize: 4, queue: 0, observed: 77, best-error: (visited = (9.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.759e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 13> population: 16, bsize: 4, queue: 0, observed: 77, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 14> population: 16, bsize: 4, queue: 2, observed: 79, best-error: (visited = (8.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.76e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.368e-6)
SearchModels iteration 15> population: 16, bsize: 4, queue: 2, observed: 81, best-error: (visited = (9.0, 9.5, 10.0), radius = (5.655045986175537, 9.253197526931762, 15.82512092590332), recall = 0.95, searchtime = 1.759e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (4.988483428955078, 9.180437707901001, 15.82512092590332), recall = 0.9800000000000001, searchtime = 2.109e-6)
SearchModels> reached maximum number of iterations 16
NeighborhoodApproximationIndex.jl: Error During Test at /home/pkgeval/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:55
  Got exception outside of a @test
  MethodError: no method matching InvertedFiles.BinaryInvertedFile(::Int64, ::JaccardDistance, ::Type{Int32})
  The type `InvertedFiles.BinaryInvertedFile` exists, but no method is defined for this combination of argument types when trying to construct it.
  
  Closest candidates are:
    InvertedFiles.BinaryInvertedFile(::Any, ::Any, ::Any, !Matched::Any)
     @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:19
    InvertedFiles.BinaryInvertedFile(::Integer, ::Any)
     @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:44
    InvertedFiles.BinaryInvertedFile(::Integer)
     @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:44
    ...
  
  Stacktrace:
    [1] KnrIndex(dist::SqL2Distance, db::MatrixDatabase{Matrix{Float32}}; invfiletype::Type{InvertedFiles.BinaryInvertedFile}, invfiledist::JaccardDistance, refs::MatrixDatabase{Matrix{Float32}}, centers::Nothing, kbuild::Int64, ksearch::Int64, centersrecall::Float64, ordering::DistanceOrdering, pools::Nothing, parallel_block::Int64, verbose::Bool)
      @ NeighborhoodApproximationIndex ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/src/knr.jl:244
    [2] macro expansion
      @ ./timing.jl:461 [inlined]
    [3] runtest(; dim::Int64, n::Int64, m::Int64, numcenters::Int64, k::Int64, centersrecall::Float64, kbuild::Int64, ksearch::Int64, parallel_block::Int64, ordering::DistanceOrdering, minrecall::Float64)
      @ Main ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:17
    [4] top-level scope
      @ ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:56
    [5] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined]
    [6] macro expansion
      @ ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:58 [inlined]
    [7] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:306
    [8] top-level scope
      @ none:6
    [9] eval(m::Module, e::Any)
      @ Core ./boot.jl:489
   [10] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:287
   [11] _start()
      @ Base ./client.jl:554
Test Summary:                     | Error  Total   Time
NeighborhoodApproximationIndex.jl |     1      1  21.5s
RNG of the outermost testset: Random.Xoshiro(0x7e976f6336ca7474, 0x692b6df65da7ed3d, 0x69040c3b65523e83, 0x6a840a93984135a6, 0xb0ca40787425ec44)
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:55

Testing failed after 48.64s

ERROR: LoadError: Package NeighborhoodApproximationIndex errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:321
 [12] _start()
    @ Base ./client.jl:554
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 316.44s: package tests unexpectedly errored