Package evaluation of MixedAnova on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T23:31:35.879 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.39s ################################################################################ # Installation # Installing MixedAnova... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [72e9ff3b] + MixedAnova v0.5.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [6e4b80f9] + BenchmarkTools v1.6.0 [c3b6d118] + BitIntegers v0.3.5 [523fee87] + CodecBzip2 v0.8.5 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.13.0 ⌃ [9d5cd8c9] + FixedEffectModels v1.8.0 [c8885935] + FixedEffects v2.4.1 [f6369f11] + ForwardDiff v1.0.1 ⌃ [38e38edf] + GLM v1.8.3 [6407cd72] + GroupedArrays v0.3.3 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.42.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [72e9ff3b] + MixedAnova v0.5.2 ⌃ [ff71e718] + MixedModels v4.8.2 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.4 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.21.3 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] + Vcov v0.7.1 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.43s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 361.62s ################################################################################ # Testing # Testing MixedAnova Status `/tmp/jl_Tw0GXF/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.0 ⌃ [38e38edf] GLM v1.8.3 [72e9ff3b] MixedAnova v0.5.2 ⌃ [ff71e718] MixedModels v4.8.2 [ce6b1742] RDatasets v0.7.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_Tw0GXF/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [6e4b80f9] BenchmarkTools v1.6.0 [c3b6d118] BitIntegers v0.3.5 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [523fee87] CodecBzip2 v0.8.5 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 ⌃ [9d5cd8c9] FixedEffectModels v1.8.0 [c8885935] FixedEffects v2.4.1 [f6369f11] ForwardDiff v1.0.1 ⌃ [38e38edf] GLM v1.8.3 [6407cd72] GroupedArrays v0.3.3 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.42.0 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [72e9ff3b] MixedAnova v0.5.2 ⌃ [ff71e718] MixedModels v4.8.2 [78c3b35d] Mocking v0.8.1 [d8a4904e] MutableArithmetics v1.6.4 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.0 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.1 [354b36f9] StringViews v1.3.4 [856f2bd8] StructTypes v1.11.0 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.21.3 [3bb67fe8] TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] Vcov v0.7.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 33840.2 ms ✓ CSV 1 dependency successfully precompiled in 36 seconds. 29 already precompiled. Precompiling packages... 27347.1 ms ✓ RData 19720.1 ms ✓ RDatasets 2 dependencies successfully precompiled in 48 seconds. 70 already precompiled. Precompiling packages... 7731.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 11 seconds. 50 already precompiled. Precompiling packages... 11766.2 ms ✓ GLM 1 dependency successfully precompiled in 14 seconds. 55 already precompiled. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition coefnames(MixedAnova.AnovaResult{T, MixedAnova.FTest, N} where N) where {T<:(StatsModels.TableRegressionModel{var"#s27", T} where T where var"#s27"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))})} in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:3 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:12. WARNING: Method definition coefnames(StatsModels.TableRegressionModel{var"#s27", T} where T where var"#s27"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))}, Base.Val{:anova}) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:9 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:18. Precompiling packages... 2608.0 ms ✓ CodecLz4 2533.5 ms ✓ CodecZstd 89698.2 ms ✓ MathOptInterface 19649.6 ms ✓ Arrow 10970.7 ms ✓ NLopt Info Given MixedModels was explicitly requested, output will be shown live  WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: `ProgressUnknown(desc::AbstractString; kwargs...)` is deprecated, use `ProgressUnknown(; desc = desc, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1  Minimizing 2 Time: 0:00:01 ( 0.71 s/it)  objective: 1790.1256369894638    Minimizing 57 Time: 0:00:01 (26.30 ms/it)  Minimizing 2 Time: 0:00:00 ( 0.17 s/it)  objective: 2380.5668557322774    Minimizing 9 Time: 0:00:00 (50.26 ms/it)  objective: 2453.0374442859475    Minimizing 16 Time: 0:00:00 (34.82 ms/it)  objective: 2421.2378094225714    Minimizing 24 Time: 0:00:00 (27.93 ms/it)  objective: 2363.9391324922835    Minimizing 32 Time: 0:00:00 (24.23 ms/it)  objective: 2363.32932554389    Minimizing 40 Time: 0:00:00 (22.01 ms/it)  objective: 2362.3660401162674    Minimizing 48 Time: 0:00:00 (20.54 ms/it)  objective: 2361.8373743517136    Minimizing 56 Time: 0:00:01 (19.50 ms/it)  objective: 2361.813002782447    Minimizing 64 Time: 0:00:01 (18.72 ms/it)  objective: 2361.8043047140573    Minimizing 72 Time: 0:00:01 (18.12 ms/it)  objective: 2361.796191145783    Minimizing 80 Time: 0:00:01 (17.62 ms/it)  objective: 2361.7851689397544    Minimizing 88 Time: 0:00:01 (17.22 ms/it)  objective: 2361.770459171718    Minimizing 96 Time: 0:00:01 (16.93 ms/it)  objective: 2361.7588635770035    Minimizing 104 Time: 0:00:01 (16.65 ms/it)  objective: 2361.748041059276    Minimizing 112 Time: 0:00:01 (16.40 ms/it)  objective: 2361.814024982762    Minimizing 120 Time: 0:00:01 (16.19 ms/it)  objective: 2361.5837650835538    Minimizing 128 Time: 0:00:02 (16.00 ms/it)  objective: 2361.564339142794    Minimizing 136 Time: 0:00:02 (15.83 ms/it)  objective: 2361.5584546567657    Minimizing 144 Time: 0:00:02 (15.68 ms/it)  objective: 2361.5567513151937    Minimizing 152 Time: 0:00:02 (15.56 ms/it)  objective: 2361.553711599846    Minimizing 160 Time: 0:00:02 (15.50 ms/it)  objective: 2361.551352832925    Minimizing 168 Time: 0:00:02 (15.37 ms/it)  objective: 2361.5480564651484    Minimizing 176 Time: 0:00:02 (15.27 ms/it)  objective: 2361.5481360658223    Minimizing 184 Time: 0:00:02 (15.18 ms/it)  objective: 2361.54665543938    Minimizing 192 Time: 0:00:02 (15.09 ms/it)  objective: 2361.546173095052    Minimizing 200 Time: 0:00:03 (15.02 ms/it)  objective: 2361.5458820123686    Minimizing 208 Time: 0:00:03 (14.94 ms/it)  objective: 2361.5458073883206    Minimizing 216 Time: 0:00:03 (14.88 ms/it)  objective: 2361.5458565223125    Minimizing 224 Time: 0:00:03 (14.81 ms/it)  objective: 2361.545775204179    Minimizing 232 Time: 0:00:03 (14.76 ms/it)  objective: 2361.5457701629603    Minimizing 240 Time: 0:00:03 (14.71 ms/it)  objective: 2361.5457687960434    Minimizing 248 Time: 0:00:03 (14.67 ms/it)  objective: 2361.545768645514    Minimizing 250 Time: 0:00:03 (14.66 ms/it) 123967.1 ms ✓ MixedModels 6 dependencies successfully precompiled in 254 seconds. 123 already precompiled. 2 dependencies had output during precompilation: ┌ Arrow │ WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import. │ NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Type end`. │ Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. └ ┌ MixedModels │ [Output was shown above] └ WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Precompiling packages... 10591.5 ms ✓ FixedEffects 18529.5 ms ✓ Vcov 13912.2 ms ✓ FixedEffectModels 3 dependencies successfully precompiled in 44 seconds. 58 already precompiled. WARNING: Method definition formula(StatsModels.TableRegressionModel{M, T} where T where M) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:4 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:4. WARNING: Method definition width(StatsModels.FunctionTerm{Forig, Fanon, Names} where Names where Fanon where Forig) in module StatsModels at /home/pkgeval/.julia/packages/StatsModels/fK0P3/src/terms.jl:128 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:11. WARNING: Method definition dof(FixedEffectModels.FixedEffectModel) in module FixedEffectModels at /home/pkgeval/.julia/packages/FixedEffectModels/xGOsh/src/FixedEffectModel.jl:58 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:14. ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/api.jl:102 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 Test Summary: | Pass Total Time LinearModel | 22 22 1m55.4s ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Poisson regression: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:147 Got exception outside of a @test BoundsError: attempt to access 0×0 Matrix{Float64} at index [1:130452752191232, 1:130452752191232] Stacktrace: [1] throw_boundserror(A::Matrix{Float64}, I::Tuple{UnitRange{Int64}, UnitRange{Int64}}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] view @ ./subarray.jl:214 [inlined] [4] delbeta!(p::GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}, r::Vector{Float64}, wt::Vector{Float64}) @ GLM ~/.julia/packages/GLM/6ycOV/src/linpred.jl:183 [5] _fit!(m::GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, verbose::Bool, maxiter::Int64, minstepfac::Float64, atol::Float64, rtol::Float64, start::Nothing) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:372 [6] #fit!#22 @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:462 [inlined] [7] fit! @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:429 [inlined] [8] fit(::Type{GeneralizedLinearModel}, X::Matrix{Float64}, y::Vector{Int64}, d::Poisson{Float64}, l::LogLink; dropcollinear::Bool, dofit::Bool, wts::Vector{Float64}, offset::Vector{Float64}, fitargs::@Kwargs{}) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:584 [9] (::MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogLink, Poisson{Float64}})(id::Int64) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:308 [10] iterate @ ./generator.jl:48 [inlined] [11] _collect(c::Vector{Int64}, itr::Base.Generator{Vector{Int64}, MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogLink, Poisson{Float64}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:810 [12] collect_similar @ ./array.jl:732 [inlined] [13] map @ ./abstractarray.jl:3372 [inlined] [14] #nestedmodels#83 @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:304 [inlined] [15] nestedmodels(::Type{GeneralizedLinearModel}, formula::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame, distr::Poisson{Float64}, link::LogLink; null::Bool, kwargs::@Kwargs{}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [16] nestedmodels @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [inlined] [17] nestedmodels(::Type{GeneralizedLinearModel}, formula::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame, distr::Poisson{Float64}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [18] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:124 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [20] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:148 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [22] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:148 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [27] _start() @ Base ./client.jl:554 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Logit regression: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:159 Got exception outside of a @test BoundsError: attempt to access 0×0 Matrix{Float64} at index [1:1, 1:1] Stacktrace: [1] throw_boundserror(A::Matrix{Float64}, I::Tuple{UnitRange{Int64}, UnitRange{Int64}}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] view @ ./subarray.jl:214 [inlined] [4] delbeta!(p::GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}, r::Vector{Float64}, wt::Vector{Float64}) @ GLM ~/.julia/packages/GLM/6ycOV/src/linpred.jl:183 [5] _fit!(m::GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, verbose::Bool, maxiter::Int64, minstepfac::Float64, atol::Float64, rtol::Float64, start::Nothing) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:372 [6] #fit!#22 @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:462 [inlined] [7] fit! @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:429 [inlined] [8] fit(::Type{GeneralizedLinearModel}, X::Matrix{Float64}, y::BitVector, d::Binomial{Float64}, l::LogitLink; dropcollinear::Bool, dofit::Bool, wts::Vector{Float64}, offset::Vector{Float64}, fitargs::@Kwargs{}) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:584 [9] (::MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogitLink, Binomial{Float64}})(id::Int64) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:308 [10] iterate @ ./generator.jl:48 [inlined] [11] _collect(c::Vector{Int64}, itr::Base.Generator{Vector{Int64}, MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogitLink, Binomial{Float64}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:810 [12] collect_similar @ ./array.jl:732 [inlined] [13] map @ ./abstractarray.jl:3372 [inlined] [14] #nestedmodels#83 @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:304 [inlined] [15] nestedmodels(trm::StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:295 [16] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:124 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [18] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:160 [inlined] [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [20] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:162 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [25] _start() @ Base ./client.jl:554 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/api.jl:102 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Test Summary: | Pass Error Total Time GeneralizedLinearModel | 24 2 26 1m31.3s Gamma regression | 6 6 17.5s NegativeBinomial regression | 8 8 12.4s Poisson regression | 1 1 18.9s Logit regression | 1 1 12.4s Probit regression | 5 5 24.6s InverseGaussian regression | 5 5 5.4s RNG of the outermost testset: Random.Xoshiro(0x642b7630a3a15117, 0xe8cebe256239e891, 0x8dac94ce69dd34b2, 0x5680fa9e1bff9917, 0x407d72fb9f9e41e5) ERROR: LoadError: Some tests did not pass: 24 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:123 Testing failed after 811.25s ERROR: LoadError: Package MixedAnova errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1210.06s: package tests unexpectedly errored