Package evaluation of MLJGaussianProcesses on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T21:44:33.284 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.0s ################################################################################ # Installation # Installing MLJGaussianProcesses... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [e2c51686] + MLJGaussianProcesses v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [621f4979] + AbstractFFTs v1.5.0 [99985d1d] + AbstractGPs v0.5.24 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [a9b6321e] + Atomix v1.1.1 [fa961155] + CEnum v0.5.0 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.25.2 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.2 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [d9f16b24] + Functors v0.5.2 [0c68f7d7] + GPUArrays v11.2.3 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.15 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.37 [ec8451be] + KernelFunctions v0.10.65 [929cbde3] + LLVM v9.4.2 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e2c51686] + MLJGaussianProcesses v0.1.0 [e80e1ace] + MLJModelInterface v1.11.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 ⌅ [2412ca09] + ParameterHandling v0.4.10 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] + Zygote v0.6.77 [700de1a5] + ZygoteRules v0.2.7 [dad2f222] + LLVMExtra_jll v0.0.37+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.69s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 167.16s ################################################################################ # Testing # Testing MLJGaussianProcesses Status `/tmp/jl_QyI6Qx/Project.toml` [99985d1d] AbstractGPs v0.5.24 [31c24e10] Distributions v0.25.120 [ec8451be] KernelFunctions v0.10.65 [a7f614a8] MLJBase v1.8.1 [e2c51686] MLJGaussianProcesses v0.1.0 ⌅ [2412ca09] ParameterHandling v0.4.10 [860ef19b] StableRNGs v1.0.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_QyI6Qx/Manifest.toml` [47edcb42] ADTypes v1.15.0 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.19.0 [a9b6321e] Atomix v1.1.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [3da002f7] ColorTypes v0.12.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.2 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.15 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.37 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [b964fa9f] LaTeXStrings v1.4.0 [92ad9a40] LearnAPI v1.0.1 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [a7f614a8] MLJBase v1.8.1 [e2c51686] MLJGaussianProcesses v0.1.0 [e80e1ace] MLJModelInterface v1.11.1 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [872c559c] NNlib v0.9.30 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 ⌅ [2412ca09] ParameterHandling v0.4.10 [d96e819e] Parameters v0.12.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [321657f4] ScientificTypes v3.1.0 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.3.0 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [c062fc1d] StatisticalMeasuresBase v0.1.2 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics 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[a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 7141.4 ms ✓ Transducers 28427.3 ms ✓ NNlib 10500.4 ms ✓ ScientificTypes 2290.9 ms ✓ Transducers → TransducersAdaptExt 16619.1 ms ✓ FLoops 3373.8 ms ✓ NNlib → NNlibSpecialFunctionsExt 11280.0 ms ✓ CategoricalDistributions 29626.4 ms ✓ MLUtils 22101.5 ms ✓ StatisticalMeasuresBase 19738.1 ms ✓ MLJBase 10 dependencies successfully precompiled in 155 seconds. 137 already precompiled. Precompiling packages... 6303.2 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1 dependency successfully precompiled in 7 seconds. 36 already precompiled. Precompiling packages... 3484.7 ms ✓ NNlib → NNlibForwardDiffExt 1 dependency successfully precompiled in 4 seconds. 50 already precompiled. Test Summary: | Pass Total Time default kernel builders | 1 1 2.1s [ Info: Training machine(GPR(μ = 0.0, …), …). ┌ Warning: implicit `obsdim=2` argument is deprecated and now has to be passed explicitly to specify that each column corresponds to one observation │ caller = _pullback(::Zygote.Context{false}, ::typeof(Core.kwcall), ::@NamedTuple{obsdim::Nothing}, ::typeof(KernelFunctions.vec_of_vecs), ::LinearAlgebra.Adjoint{Float64, Matrix{Float64}}) at interface2.jl:0 └ @ Core ~/.julia/packages/Zygote/zowwZ/src/compiler/interface2.jl:0 ┌ Warning: implicit `obsdim=2` argument is deprecated and now has to be passed explicitly to specify that each column corresponds to one observation │ caller = #_#1 at finite_gp_projection.jl:36 [inlined] └ @ Core ~/.julia/packages/AbstractGPs/lWdNB/src/finite_gp_projection.jl:36 Iter Function value Gradient norm 0 8.809837e+04 6.573998e+05 * time: 0.11549210548400879 1 2.900669e+04 5.000000e+01 * time: 3.121920108795166 2 1.420706e+04 5.000000e+01 * time: 3.2061049938201904 3 2.286953e+02 3.921263e+01 * time: 3.3332431316375732 4 2.135711e+02 3.370127e+01 * time: 3.407010078430176 5 2.002175e+02 2.431614e+01 * time: 3.4211950302124023 6 1.919096e+02 7.821026e+00 * time: 3.4349071979522705 7 1.912264e+02 2.806371e-01 * time: 3.4514729976654053 8 1.912256e+02 6.939811e-05 * time: 3.464595079421997 9 1.912256e+02 1.386181e-13 * time: 3.4776861667633057 ┌ Warning: implicit `obsdim=2` argument is deprecated and now has to be passed explicitly to specify that each column corresponds to one observation │ caller = #_#1 at finite_gp_projection.jl:36 [inlined] └ @ Core ~/.julia/packages/AbstractGPs/lWdNB/src/finite_gp_projection.jl:36 ┌ Warning: implicit `obsdim=2` argument is deprecated and now has to be passed explicitly to specify that each column corresponds to one observation │ caller = #_#1 at finite_gp_projection.jl:36 [inlined] └ @ Core ~/.julia/packages/AbstractGPs/lWdNB/src/finite_gp_projection.jl:36 MLJ interface: Error During Test at /home/pkgeval/.julia/packages/MLJGaussianProcesses/4Dqeh/test/runtests.jl:23 Got exception outside of a @test UndefVarError: `rsq` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MLJGaussianProcesses/4Dqeh/test/runtests.jl:25 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [3] macro expansion @ ~/.julia/packages/MLJGaussianProcesses/4Dqeh/test/runtests.jl:42 [inlined] [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [5] top-level scope @ none:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [8] _start() @ Base ./client.jl:554 Test Summary: | Pass Error Total Time MLJ interface | 3 1 4 3m34.3s RNG of the outermost testset: Random.Xoshiro(0xbf98dc5d56aaeabe, 0x44c4105c2ce43c75, 0x619d88b5e8afe153, 0xb97228defaf18a75, 0x8817d7184561cfef) ERROR: LoadError: Some tests did not pass: 3 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MLJGaussianProcesses/4Dqeh/test/runtests.jl:23 Testing failed after 415.21s ERROR: LoadError: Package MLJGaussianProcesses errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 614.72s: package tests unexpectedly errored