Package evaluation of LiteQTL on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T21:39:47.233 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.59s ################################################################################ # Installation # Installing LiteQTL... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [85e3bc59] + LiteQTL v0.2.4 Updating `~/.julia/environments/v1.12/Manifest.toml` Precompiling packages... 6674.6 ms ✓ CUDA_Driver_jll 1 dependency successfully precompiled in 7 seconds. 28 already precompiled. [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [a9b6321e] + Atomix v1.1.1 ⌅ [ab4f0b2a] + BFloat16s v0.4.2 ⌅ [fa961155] + CEnum v0.4.2 [336ed68f] + CSV v0.10.15 ⌅ [052768ef] + CUDA v5.0.0 ⌅ [1af6417a] + CUDA_Runtime_Discovery v0.2.4 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.17.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [0c68f7d7] + GPUArrays v9.1.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [61eb1bfa] + GPUCompiler v0.24.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.37 ⌅ [929cbde3] + LLVM v6.6.3 [b964fa9f] + LaTeXStrings v1.4.0 [85e3bc59] + LiteQTL v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [5da4648a] + NVTX v0.3.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [013be700] + UnsafeAtomics v0.2.1 ⌅ [d80eeb9a] + UnsafeAtomicsLLVM v0.1.5 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [4ee394cb] + CUDA_Driver_jll v0.6.0+4 ⌅ [76a88914] + CUDA_Runtime_jll v0.9.2+4 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 ⌅ [dad2f222] + LLVMExtra_jll v0.0.29+0 [e98f9f5b] + NVTX_jll v3.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 16.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4364.2 ms ✓ CUDA_Driver_jll 1 dependency successfully precompiled in 5 seconds. 28 already precompiled. Precompiling package dependencies... Precompilation completed after 116.47s ################################################################################ # Testing # Testing LiteQTL Status `/tmp/jl_ljSSvy/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [052768ef] CUDA v5.0.0 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [85e3bc59] LiteQTL v0.2.4 [1bc83da4] SafeTestsets v0.1.0 [10745b16] Statistics v1.11.1 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ljSSvy/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [a9b6321e] Atomix v1.1.1 ⌅ [ab4f0b2a] BFloat16s v0.4.2 ⌅ [fa961155] CEnum v0.4.2 [336ed68f] CSV v0.10.15 ⌅ [052768ef] CUDA v5.0.0 ⌅ [1af6417a] CUDA_Runtime_Discovery v0.2.4 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.17.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [e2ba6199] ExprTools v0.1.10 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [0c68f7d7] GPUArrays v9.1.0 ⌅ [46192b85] GPUArraysCore v0.1.5 ⌅ [61eb1bfa] GPUCompiler v0.24.5 [d7ba0133] Git v1.4.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.37 ⌅ [929cbde3] LLVM v6.6.3 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [85e3bc59] LiteQTL v0.2.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [e1d29d7a] Missings v1.2.0 ⌅ [5da4648a] NVTX v0.3.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [1bc83da4] SafeTestsets v0.1.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 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[8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9597.9 ms ? GPUCompiler 10765.7 ms ? CUDA 14704.7 ms ? CUDA → SpecialFunctionsExt 14374.3 ms ? Atomix → AtomixCUDAExt Info Given LiteQTL was explicitly requested, output will be shown live  ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 17010.5 ms ? LiteQTL ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 15540.6 ms ? GPUCompiler Info Given CUDA was explicitly requested, output will be shown live  ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 13108.1 ms ? CUDA 14261.5 ms ? Atomix → AtomixCUDAExt ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... Info Given GPUCompiler was explicitly requested, output will be shown live  ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 12410.8 ms ? GPUCompiler ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35. ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:47 [2] top-level scope @ ~/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:308 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:35 [5] include(mod::Module, _path::String) @ Base ./Base.jl:305 [6] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2686 [7] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [8] macro expansion @ ./loading.jl:2389 [inlined] [9] macro expansion @ ./lock.jl:376 [inlined] [10] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [11] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [12] top-level scope @ ~/.julia/packages/CUDA/nbRJk/src/CUDA.jl:3 [13] include(mod::Module, _path::String) @ Base ./Base.jl:305 [14] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2686 [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [16] macro expansion @ ./loading.jl:2389 [inlined] [17] macro expansion @ ./lock.jl:376 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [20] top-level scope @ ~/.julia/packages/LiteQTL/X0a1l/src/LiteQTL.jl:7 [21] include(mod::Module, _path::String) @ Base ./Base.jl:305 [22] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2686 [23] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [24] macro expansion @ ./loading.jl:2389 [inlined] [25] macro expansion @ ./lock.jl:376 [inlined] [26] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [27] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [28] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [29] top-level scope @ none:6 [30] eval(m::Module, e::Any) @ Core ./boot.jl:489 [31] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [32] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:308 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at /home/pkgeval/.julia/packages/LiteQTL/X0a1l/src/LiteQTL.jl:1 in expression starting at /home/pkgeval/.julia/packages/LiteQTL/X0a1l/test/runtests.jl:1 Testing failed after 222.16s ERROR: LoadError: Package LiteQTL errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 389.91s: illegal method overwrites during precompilation