Package evaluation of LaplacianExpectationMaximization on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T20:41:50.616 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.92s ################################################################################ # Installation # Installing LaplacianExpectationMaximization... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [610349f3] + LaplacianExpectationMaximization v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [d360d2e6] + ChainRulesCore v1.25.2 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.17.0 [b0b7db55] + ComponentArrays v0.15.28 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.2 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [d9f16b24] + Functors v0.5.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.0 [610349f3] + LaplacianExpectationMaximization v0.1.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [3bd65402] + Optimisers v0.4.6 [65fa8838] + OptimizationCallbacks v0.1.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 6 direct dependencies failed to precompile: EnzymeGPUArraysCoreExt Failed to precompile EnzymeGPUArraysCoreExt [0dc2ebea-ba9b-5f8a-8acc-f28a2fdd0679] to "/home/pkgeval/.julia/compiled/v1.12/EnzymeGPUArraysCoreExt/jl_o2YVG5". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [8] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139 [9] include(mod::Module, _path::String) @ Base ./Base.jl:305 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2991 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [14] include_string @ ./loading.jl:2847 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [16] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_W0RdkI". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3278 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2647 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3849 [10] maybe_cachefile_lock @ ./loading.jl:3846 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2633 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [13] macro expansion @ ./loading.jl:2389 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [17] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/ext/EnzymeGPUArraysCoreExt.jl:4 [18] include(mod::Module, _path::String) @ Base ./Base.jl:305 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [23] include_string @ ./loading.jl:2847 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [25] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/ext/EnzymeGPUArraysCoreExt.jl:1 in expression starting at stdin:5 EnzymeExt Failed to precompile EnzymeExt [6c40b018-69a8-588b-8356-7a894c07e3df] to "/home/pkgeval/.julia/compiled/v1.12/EnzymeExt/jl_tefCkE". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [8] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139 [9] include(mod::Module, _path::String) @ Base ./Base.jl:305 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2991 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [14] include_string @ ./loading.jl:2847 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [16] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_D3aGA3". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3278 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2647 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3849 [10] maybe_cachefile_lock @ ./loading.jl:3846 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2633 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [13] macro expansion @ ./loading.jl:2389 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [17] top-level scope @ ~/.julia/packages/LaplacianExpectationMaximization/as2MD/ext/EnzymeExt.jl:3 [18] include(mod::Module, _path::String) @ Base ./Base.jl:305 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [23] include_string @ ./loading.jl:2847 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [25] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/ext/EnzymeExt.jl:1 in expression starting at stdin:5 EnzymeSpecialFunctionsExt Failed to precompile EnzymeSpecialFunctionsExt [d7391e87-ccda-5c29-91ec-5d3a52120610] to "/home/pkgeval/.julia/compiled/v1.12/EnzymeSpecialFunctionsExt/jl_LVe3Ln". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [8] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139 [9] include(mod::Module, _path::String) @ Base ./Base.jl:305 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2991 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [14] include_string @ ./loading.jl:2847 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [16] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_DLpdlQ". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3278 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2647 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3849 [10] maybe_cachefile_lock @ ./loading.jl:3846 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2633 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [13] macro expansion @ ./loading.jl:2389 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [17] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/ext/EnzymeSpecialFunctionsExt.jl:4 [18] include(mod::Module, _path::String) @ Base ./Base.jl:305 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [23] include_string @ ./loading.jl:2847 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [25] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/ext/EnzymeSpecialFunctionsExt.jl:1 in expression starting at stdin:5 EnzymeLogExpFunctionsExt Failed to precompile EnzymeLogExpFunctionsExt [66ee98d2-fe2d-5ae6-bd9b-9e5fe8b5b781] to "/home/pkgeval/.julia/compiled/v1.12/EnzymeLogExpFunctionsExt/jl_YtFyHY". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [8] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139 [9] include(mod::Module, _path::String) @ Base ./Base.jl:305 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2991 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [14] include_string @ ./loading.jl:2847 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [16] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_7RycqO". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3278 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2647 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3849 [10] maybe_cachefile_lock @ ./loading.jl:3846 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2633 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [13] macro expansion @ ./loading.jl:2389 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [17] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/ext/EnzymeLogExpFunctionsExt.jl:4 [18] include(mod::Module, _path::String) @ Base ./Base.jl:305 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [23] include_string @ ./loading.jl:2847 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [25] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/ext/EnzymeLogExpFunctionsExt.jl:1 in expression starting at stdin:5 EnzymeChainRulesCoreExt Failed to precompile EnzymeChainRulesCoreExt [52abfbdb-267e-5644-bb2a-9e5e2a269f06] to "/home/pkgeval/.julia/compiled/v1.12/EnzymeChainRulesCoreExt/jl_I21ioB". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [8] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139 [9] include(mod::Module, _path::String) @ Base ./Base.jl:305 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2991 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [14] include_string @ ./loading.jl:2847 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [16] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_nu74Qh". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3278 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2647 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3849 [10] maybe_cachefile_lock @ ./loading.jl:3846 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2633 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [13] macro expansion @ ./loading.jl:2389 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [17] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/ext/EnzymeChainRulesCoreExt.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:305 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [23] include_string @ ./loading.jl:2847 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [25] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/ext/EnzymeChainRulesCoreExt.jl:1 in expression starting at stdin:5 Enzyme Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_5BkqIs". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [8] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139 [9] include(mod::Module, _path::String) @ Base ./Base.jl:305 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [14] include_string @ ./loading.jl:2847 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [16] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 693.54s ################################################################################ # Testing # Testing LaplacianExpectationMaximization Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_qolm2A/Project.toml` [47edcb42] ↑ ADTypes v1.11.0 ⇒ v1.15.0 [4c88cf16] ↑ Aqua v0.8.9 ⇒ v0.8.13 [b0b7db55] ↑ ComponentArrays v0.15.19 ⇒ v0.15.28 [31c24e10] ↑ Distributions v0.25.113 ⇒ v0.25.120 [7da242da] ↑ Enzyme v0.13.16 ⇒ v0.13.59 [6a86dc24] ↑ FiniteDiff v2.26.2 ⇒ v2.27.0 [c3a54625] ↑ JET v0.9.12 ⇒ v0.10.6 [033835bb] ↑ JLD2 v0.5.10 ⇒ v0.5.15 [610349f3] + LaplacianExpectationMaximization v0.1.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [76087f3c] ↑ NLopt v1.1.1 ⇒ v1.2.0 [3bd65402] ↑ Optimisers v0.4.1 ⇒ v0.4.6 [7f7a1694] ↑ Optimization v4.0.5 ⇒ v4.4.0 [36348300] ↑ OptimizationOptimJL v0.4.1 ⇒ v0.4.3 Updating `/tmp/jl_qolm2A/Manifest.toml` [47edcb42] ↑ ADTypes v1.11.0 ⇒ v1.15.0 [7d9f7c33] ↑ Accessors v0.1.38 ⇒ v0.1.42 [79e6a3ab] ↑ Adapt v4.1.1 ⇒ v4.3.0 [4c88cf16] ↑ Aqua v0.8.9 ⇒ v0.8.13 [4fba245c] ↑ ArrayInterface v7.17.1 ⇒ v7.19.0 [d360d2e6] ↑ ChainRulesCore v1.25.0 ⇒ v1.25.2 [da1fd8a2] ↑ CodeTracking v1.3.6 ⇒ v1.3.9 [34da2185] ↑ Compat v4.16.0 ⇒ v4.17.0 [807dbc54] + Compiler v0.1.1 [b0b7db55] ↑ ComponentArrays v0.15.19 ⇒ v0.15.28 [187b0558] ↑ ConstructionBase v1.5.8 ⇒ v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22 [a0c0ee7d] ↑ DifferentiationInterface v0.6.23 ⇒ v0.7.2 [31c24e10] ↑ Distributions v0.25.113 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [4e289a0a] ↑ EnumX v1.0.4 ⇒ v1.0.5 [7da242da] ↑ Enzyme v0.13.16 ⇒ v0.13.59 [f151be2c] ↑ EnzymeCore v0.8.6 ⇒ v0.8.12 [6b7a57c9] - Expronicon v0.8.5 [55351af7] + ExproniconLite v0.10.14 [5789e2e9] ↑ FileIO v1.16.6 ⇒ v1.17.0 [6a86dc24] ↑ FiniteDiff v2.26.2 ⇒ v2.27.0 [d9f16b24] ↑ Functors v0.5.1 ⇒ v0.5.2 [61eb1bfa] ↑ GPUCompiler v1.0.1 ⇒ v1.6.1 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] ↑ HypergeometricFunctions v0.3.25 ⇒ v0.3.28 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [c3a54625] ↑ JET v0.9.12 ⇒ v0.10.6 [033835bb] ↑ JLD2 v0.5.10 ⇒ v0.5.15 [692b3bcd] ↑ JLLWrappers v1.6.1 ⇒ v1.7.0 [ae98c720] + Jieko v0.2.1 [aa1ae85d] ↑ JuliaInterpreter v0.9.38 ⇒ v0.10.3 [70703baa] + JuliaSyntax v1.0.2 [929cbde3] ↑ LLVM v9.1.3 ⇒ v9.4.2 [b964fa9f] + LaTeXStrings v1.4.0 [610349f3] + LaplacianExpectationMaximization v0.1.0 [d3d80556] ↑ LineSearches v7.3.0 ⇒ v7.4.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [6f1432cf] ↑ LoweredCodeUtils v3.1.0 ⇒ v3.4.1 [d8e11817] - MLStyle v0.4.17 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.16 [2e0e35c7] + Moshi v0.3.7 [d41bc354] ↑ NLSolversBase v7.8.3 ⇒ v7.10.0 [76087f3c] ↑ NLopt v1.1.1 ⇒ v1.2.0 [77ba4419] ↑ NaNMath v1.0.2 ⇒ v1.1.3 [d8793406] ↑ ObjectFile v0.4.2 ⇒ v0.4.4 [429524aa] ↑ Optim v1.10.0 ⇒ v1.13.2 [3bd65402] ↑ Optimisers v0.4.1 ⇒ v0.4.6 [7f7a1694] ↑ Optimization v4.0.5 ⇒ v4.4.0 [bca83a33] ↑ OptimizationBase v2.4.0 ⇒ v2.8.0 [65fa8838] + OptimizationCallbacks v0.1.0 [36348300] ↑ OptimizationOptimJL v0.4.1 ⇒ v0.4.3 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.2 [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] ↑ ProgressLogging v0.1.4 ⇒ v0.1.5 [92933f4c] ↑ ProgressMeter v1.10.2 ⇒ v1.10.4 [43287f4e] ↑ PtrArrays v1.2.1 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.11.1 ⇒ v2.11.2 [731186ca] ↑ RecursiveArrayTools v3.27.4 ⇒ v3.34.1 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [7e49a35a] ↑ RuntimeGeneratedFunctions v0.5.13 ⇒ v0.5.15 [0bca4576] ↑ SciMLBase v2.64.0 ⇒ v2.103.0 [c0aeaf25] ↑ SciMLOperators v0.3.12 ⇒ v1.3.1 [53ae85a6] ↑ SciMLStructures v1.6.1 ⇒ v1.7.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] ↑ Scratch v1.2.1 ⇒ v1.3.0 [efcf1570] ↑ Setfield v1.1.1 ⇒ v1.1.2 [9f842d2f] ↑ SparseConnectivityTracer v0.6.9 ⇒ v0.6.21 [0a514795] ↑ SparseMatrixColorings v0.4.10 ⇒ v0.4.21 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1 [aedffcd0] ↑ Static v1.1.1 ⇒ v1.2.0 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5 [4c63d2b9] ↑ StatsFuns v1.3.2 ⇒ v1.5.0 [892a3eda] + StringManipulation v0.4.1 [2efcf032] ↑ SymbolicIndexingInterface v0.3.35 ⇒ v0.3.41 [bd369af6] ↑ Tables v1.12.0 ⇒ v1.12.1 [a759f4b9] - TimerOutputs v0.5.25 [e689c965] + Tracy v0.1.5 [7cc45869] ↑ Enzyme_jll v0.0.165+0 ⇒ v0.0.185+0 [dad2f222] ↑ LLVMExtra_jll v0.0.34+0 ⇒ v0.0.37+2 [ad6e5548] + LibTracyClient_jll v0.9.1+6 [c8ffd9c3] - MbedTLS_jll v2.28.6+0 [079eb43e] ↑ NLopt_jll v2.8.0+0 ⇒ v2.10.0+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [37e2e46d] ↑ LinearAlgebra v1.11.0 ⇒ v1.12.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.11.0 ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.11.0 ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.6.0+0 ⇒ v8.11.1+1 [e37daf67] ↑ LibGit2_jll v1.7.2+0 ⇒ v1.9.0+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.12.12 ⇒ v2025.5.20 [4536629a] ↑ OpenBLAS_jll v0.3.27+1 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] ↑ SuiteSparse_jll v7.7.0+0 ⇒ v7.8.3+2 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [8e850b90] ↑ libblastrampoline_jll v5.11.0+0 ⇒ v5.13.1+0 [8e850ede] ↑ nghttp2_jll v1.59.0+0 ⇒ v1.64.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2 Test Successfully re-resolved Status `/tmp/jl_qolm2A/Project.toml` [47edcb42] ADTypes v1.15.0 [4c88cf16] Aqua v0.8.13 [b0b7db55] ComponentArrays v0.15.28 [2569d6c7] ConcreteStructs v0.2.3 [31c24e10] Distributions v0.25.120 [7da242da] Enzyme v0.13.59 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [c3a54625] JET v0.10.6 [033835bb] JLD2 v0.5.15 [610349f3] LaplacianExpectationMaximization v0.1.0 [2ab3a3ac] LogExpFunctions v0.3.29 [76087f3c] NLopt v1.2.0 [3bd65402] Optimisers v0.4.6 [7f7a1694] Optimization v4.4.0 [36348300] OptimizationOptimJL v0.4.3 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qolm2A/Manifest.toml` [47edcb42] ADTypes v1.15.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [fa961155] CEnum v0.5.0 [d360d2e6] ChainRulesCore v1.25.2 [da1fd8a2] CodeTracking v1.3.9 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.17.0 [807dbc54] Compiler v0.1.1 [b0b7db55] ComponentArrays v0.15.28 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.2 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [7da242da] Enzyme v0.13.59 [f151be2c] EnzymeCore v0.8.12 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [9aa1b823] FastClosures v0.3.2 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.6.1 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.10.6 [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.0 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.3 [70703baa] JuliaSyntax v1.0.2 [5be7bae1] LBFGSB v0.4.1 [929cbde3] LLVM v9.4.2 [b964fa9f] LaTeXStrings v1.4.0 [610349f3] LaplacianExpectationMaximization v0.1.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [6f1432cf] LoweredCodeUtils v3.4.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [d41bc354] NLSolversBase v7.10.0 [76087f3c] NLopt v1.2.0 [77ba4419] NaNMath v1.1.3 [d8793406] ObjectFile v0.4.4 [429524aa] Optim v1.13.2 [3bd65402] Optimisers v0.4.6 [7f7a1694] Optimization v4.4.0 [bca83a33] OptimizationBase v2.8.0 [65fa8838] OptimizationCallbacks v0.1.0 [36348300] OptimizationOptimJL v0.4.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.5 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.34.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [0bca4576] SciMLBase v2.103.0 [c0aeaf25] SciMLOperators v1.3.1 [53ae85a6] SciMLStructures v1.7.0 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [9f842d2f] SparseConnectivityTracer v0.6.21 [0a514795] SparseMatrixColorings v0.4.21 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [53d494c1] StructIO v0.3.1 [2efcf032] SymbolicIndexingInterface v0.3.41 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [e689c965] Tracy v0.1.5 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [7cc45869] Enzyme_jll v0.0.185+0 [dad2f222] LLVMExtra_jll v0.0.37+2 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [ad6e5548] LibTracyClient_jll v0.9.1+6 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9677.0 ms ✓ Accessors 13394.3 ms ✓ SparseMatrixColorings 34194.6 ms ✓ PrettyTables 1804.9 ms ✓ Accessors → LinearAlgebraExt 1885.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 4307.0 ms ✓ SciMLOperators 5232.1 ms ✓ SymbolicIndexingInterface 1202.0 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1745.5 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 6314.5 ms ✓ RecursiveArrayTools 3839.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 29154.2 ms ✓ SciMLBase 9707.2 ms ✓ OptimizationBase 10244.1 ms ✓ Optimization 14 dependencies successfully precompiled in 135 seconds. 96 already precompiled. Precompiling packages... 3534.7 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 1 dependency successfully precompiled in 4 seconds. 56 already precompiled. Precompiling packages... 3724.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1 dependency successfully precompiled in 4 seconds. 59 already precompiled. Precompiling packages... 4233.1 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 6474.8 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 2 dependencies successfully precompiled in 12 seconds. 73 already precompiled. Precompiling packages... 5617.4 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerSpecialFunctionsExt 1 dependency successfully precompiled in 6 seconds. 21 already precompiled. Precompiling packages... 1722.8 ms ✓ OptimizationBase → OptimizationForwardDiffExt 1 dependency successfully precompiled in 3 seconds. 101 already precompiled. Precompiling packages... 13487.2 ms ✓ LaplacianExpectationMaximization → OptimizationExt 1 dependency successfully precompiled in 16 seconds. 187 already precompiled. Precompiling packages... 35464.1 ms ✓ OptimizationOptimJL 1 dependency successfully precompiled in 37 seconds. 149 already precompiled. Precompiling packages... Info Given Enzyme was explicitly requested, output will be shown live  ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace:  [1] getproperty(x::Core.TypeName, f::Symbol)  @ Base ./Base_compiler.jl:54  [2] top-level scope  @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773  [3] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:306  [4] top-level scope  @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120  [5] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:306  [6] top-level scope  @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151  [7] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:306  [8] top-level scope  @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139  [9] include(mod::Module, _path::String)  @ Base ./Base.jl:305  [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2991  [11] top-level scope  @ stdin:5  [12] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2837  [14] include_string  @ ./loading.jl:2847 [inlined]  [15] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:319  [16] _start()  @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin:5 ✗ Enzyme 0 dependencies successfully precompiled in 26 seconds. 46 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: Enzyme Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.12/Enzyme/jl_wexcDc". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1151 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [8] top-level scope @ ~/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:139 [9] include(mod::Module, _path::String) @ Base ./Base.jl:305 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [14] include_string @ ./loading.jl:2847 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [16] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/jitrules.jl:1773 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/rules/llvmrules.jl:120 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/rwbr4/src/Enzyme.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/test/runtests.jl:5 Testing failed after 268.71s ERROR: LoadError: Package LaplacianExpectationMaximization errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1013.83s: package fails to precompile