Package evaluation of JuliaBUGS on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T23:20:58.805 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.39s ################################################################################ # Installation # Installing JuliaBUGS... Resolving package versions... Installed IrrationalConstants ───────── v0.2.4 Installed RegistryInstances ─────────── v0.1.0 Installed Functors ──────────────────── v0.5.2 Installed AbstractMCMC ──────────────── v5.6.3 Installed ArnoldiMethod ─────────────── v0.4.0 Installed Rmath ─────────────────────── v0.8.0 Installed JLD2 ──────────────────────── v0.5.15 Installed Transducers ───────────────── v0.4.84 Installed Bijectors ─────────────────── v0.15.8 Installed HypergeometricFunctions ───── v0.3.28 Installed ConsoleProgressMonitor ────── v0.1.2 Installed MarkdownAST ───────────────── v0.1.2 Installed JSON ──────────────────────── v0.21.4 Installed Preferences ───────────────── v1.4.3 Installed ArgCheck ──────────────────── v2.5.0 Installed StatsFuns ─────────────────── v1.5.0 Installed PtrArrays ─────────────────── v1.3.0 Installed Accessors ─────────────────── v0.1.42 Installed TableTraits ───────────────── v1.0.1 Installed Expat_jll ─────────────────── v2.6.5+0 Installed LoggingExtras ─────────────── v1.1.0 Installed Inflate ───────────────────── v0.1.5 Installed ProgressLogging ───────────── v0.1.5 Installed HashArrayMappedTries ──────── v0.2.0 Installed SpecialFunctions ──────────── v2.5.1 Installed Parsers ───────────────────── v2.8.3 Installed IOCapture ─────────────────── v0.2.5 Installed Tables ────────────────────── v1.12.1 Installed PDMats ────────────────────── v0.11.35 Installed AbstractPPL ───────────────── v0.10.1 Installed Documenter ────────────────── v1.14.1 Installed Git_jll ───────────────────── v2.50.0+0 Installed Baselet ───────────────────── v0.1.1 Installed DataAPI ───────────────────── v1.16.0 Installed JLLWrappers ───────────────── v1.7.0 Installed Setfield ──────────────────── v1.1.2 Installed ProgressMeter ─────────────── v1.10.4 Installed JuliaSyntax ───────────────── v0.4.10 Installed StaticArraysCore ──────────── v1.4.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ConstructionBase ──────────── v1.6.0 Installed StaticArrays ──────────────── v1.9.13 Installed Roots ─────────────────────── v2.2.8 Installed PrecompileTools ───────────── v1.3.2 Installed DefineSingletons ──────────── v0.1.2 Installed DataValueInterfaces ───────── v1.0.0 Installed MicroCollections ──────────── v0.2.0 Installed OrderedCollections ────────── v1.8.1 Installed AbstractTrees ─────────────── v0.4.5 Installed TranscodingStreams ────────── v0.11.3 Installed ScopedValues ──────────────── v1.3.0 Installed InitialValues ─────────────── v0.3.1 Installed ChainRulesCore ────────────── v1.25.2 Installed OpenSSH_jll ───────────────── v10.0.1+0 Installed FileIO ────────────────────── v1.17.0 Installed FillArrays ────────────────── v1.13.0 Installed QuadGK ────────────────────── v2.11.2 Installed Graphs ────────────────────── v1.13.0 Installed TerminalLoggers ───────────── v0.1.7 Installed LazilyInitializedFields ───── v1.3.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Reexport ──────────────────── v1.2.2 Installed Statistics ────────────────── v1.11.1 Installed SplittablesBase ───────────── v0.1.15 Installed MappedArrays ──────────────── v0.4.2 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed JuliaBUGS ─────────────────── v0.9.0 Installed LeftChildRightSiblingTrees ── v0.2.0 Installed DataStructures ────────────── v0.18.22 Installed BangBang ──────────────────── v0.4.4 Installed StatsAPI ──────────────────── v1.7.1 Installed AliasTables ───────────────── v1.1.3 Installed MacroTools ────────────────── v0.5.16 Installed Compat ────────────────────── v4.17.0 Installed MetaGraphsNext ────────────── v0.7.3 Installed CompositionsBase ──────────── v0.1.2 Installed Distributions ─────────────── v0.25.120 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Git ───────────────────────── v1.4.0 Installed CommonSolve ───────────────── v0.2.4 Installed InverseFunctions ──────────── v0.1.17 Installed CodecZlib ─────────────────── v0.7.8 Installed LogDensityProblemsAD ──────── v1.13.1 Installed SortingAlgorithms ─────────── v1.2.1 Installed StatsBase ─────────────────── v0.34.5 Installed SimpleTraits ──────────────── v0.9.4 Installed Missings ──────────────────── v1.2.0 Installed ANSIColoredPrinters ───────── v0.0.1 Installed DocStringExtensions ───────── v0.9.5 Installed DensityInterface ──────────── v0.4.0 Installed ChangesOfVariables ────────── v0.1.10 Installed LogDensityProblems ────────── v2.1.2 Installing 6 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact Expat 271.4 KiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.2 MiB Installed artifact Git 48.8 MiB Updating `~/.julia/environments/v1.12/Project.toml` [ba9fb4c0] + JuliaBUGS v0.9.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [80f14c24] + AbstractMCMC v5.6.3 ⌅ [7a57a42e] + AbstractPPL v0.10.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [76274a88] + Bijectors v0.15.8 [d360d2e6] + ChainRulesCore v1.25.2 [9e997f8a] + ChangesOfVariables v0.1.10 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [b429d917] + DensityInterface v0.4.0 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.14.1 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [d7ba0133] + Git v1.4.0 [86223c79] + Graphs v1.13.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [b5f81e59] + IOCapture v0.2.5 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [ba9fb4c0] + JuliaBUGS v0.9.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [0e77f7df] + LazilyInitializedFields v1.3.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [6fdf6af0] + LogDensityProblems v2.1.2 [996a588d] + LogDensityProblemsAD v1.13.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [d0879d2d] + MarkdownAST v0.1.2 [fa8bd995] + MetaGraphsNext v0.7.3 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.8 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [2e619515] + Expat_jll v2.6.5+0 [f8c6e375] + Git_jll v2.50.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [9bd350c2] + OpenSSH_jll v10.0.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 13.43s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4889.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 881.24s ################################################################################ # Testing # Testing JuliaBUGS Status `/tmp/jl_niKylB/Project.toml` [47edcb42] ADTypes v1.15.0 [80f14c24] AbstractMCMC v5.6.3 ⌅ [7a57a42e] AbstractPPL v0.10.1 [7d9f7c33] Accessors v0.1.42 ⌅ [0bf59076] AdvancedHMC v0.6.4 [5b7e9947] AdvancedMH v0.8.8 [198e06fe] BangBang v0.4.4 [76274a88] Bijectors v0.15.8 [082447d4] ChainRules v1.72.5 [31c24e10] Distributions v0.25.120 [e30172f5] Documenter v1.14.1 [86223c79] Graphs v1.13.0 [682c06a0] JSON v0.21.4 [ba9fb4c0] JuliaBUGS v0.9.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.1 [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [c7f686f2] MCMCChains v6.0.7 [1914dd2f] MacroTools v0.5.16 [fa8bd995] MetaGraphsNext v0.7.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [37e2e3b7] ReverseDiff v1.16.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_niKylB/Manifest.toml` [47edcb42] ADTypes v1.15.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.6.3 ⌅ [7a57a42e] AbstractPPL v0.10.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 ⌅ [0bf59076] AdvancedHMC v0.6.4 [5b7e9947] AdvancedMH v0.8.8 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [76274a88] Bijectors v0.15.8 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [9e997f8a] ChangesOfVariables v0.1.10 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.4.0 [86223c79] Graphs v1.13.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [505f98c9] InplaceOps v0.3.0 [a98d9a8b] Interpolations v0.16.1 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ba9fb4c0] JuliaBUGS v0.9.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 ⌅ [c7f686f2] MCMCChains v6.0.7 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.11.1 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [d0879d2d] MarkdownAST v0.1.2 [fa8bd995] MetaGraphsNext v0.7.3 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [c020b1a1] NaturalSort v1.0.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.5 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [37e2e3b7] ReverseDiff v1.16.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.8 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.3.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [efce3f68] WoodburyMatrices v1.0.0 [2e619515] Expat_jll v2.6.5+0 [f5851436] FFTW_jll v3.3.11+0 [f8c6e375] Git_jll v2.50.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.0.1+1 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: progress logging is disabled globally [ Info: Running tests for groups: all ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/eoWm2/src/utilities/utilities.jl:665 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Unit Tests | 5 5 1m37.4s Test Summary: | Pass Total Time Parser | 91 91 58.7s Test Summary: | Pass Total Time CollectVariables Error Cases | 4 4 6.5s Test Summary: | Pass Total Time is_specified_by_data | 14 14 0.6s ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'a' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Constant propagation | 5 5 7.6s Test Summary: | Pass Total Time CheckRepeatedAssignments | 7 7 15.4s ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 Test Summary: | Pass Total Time lower bound greater than upper bound | 2 2 7.5s ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'xa[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'rtx[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'T[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'z[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'log.Base4[1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'r[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'Y[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'Y[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Total Time BUGS examples volume 1 | 0 9m09.1s ┌ Warning: `cholesky(A::Union{StridedMatrix, RealHermSymComplexHerm{<:Real, <:StridedMatrix}}, ::Val{false}; check::Bool = true)` is deprecated, use `cholesky(A, NoPivot(); check)` instead. │ caller = #rrule#830 at factorization.jl:498 [inlined] └ @ Core ~/.julia/packages/ChainRules/166sf/src/rulesets/LinearAlgebra/factorization.jl:498 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'b' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Some corner cases | 16 16 1m47.7s Test Summary: | Pass Total Time Log density | 22 22 26.5s ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'xa[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Log density of BUGS models | 16 16 16.2s Test Summary: | Pass Total Time serialization | 374 374 12.0s Test Summary: | Pass Total Time controlling sampling behavior for conditioned variables | 4 4 4.7s Test Summary: | Pass Total Time `evaluate!!` is actually modifying returned `evaluation_env` | 1 1 10.2s Test Summary: | Pass Total Time logprior and loglikelihood | 3 3 10.0s Test Summary: | Pass Total Time Simple gibbs | 5 5 6m29.7s [ Info: Found initial step size 0.2 Sampling 0%| | ETA: 7:59:04 iterations: 2 ratio_divergent_transitions: 0.0 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 3 is_accept: true acceptance_rate: 0.9385044729757657 log_density: -23.56716720492705 hamiltonian_energy: 24.971097958350885 hamiltonian_energy_error: -0.3887961772857018 max_hamiltonian_energy_error: -0.3887961772857018 tree_depth: 2 numerical_error: false step_size: 0.3415458588325662 nom_step_size: 0.3415458588325662 is_adapt: false mass_matrix: DiagEuclideanMetric([0.07941925770421532, 0.007 ...])                                   Sampling 87%|███████████████████████████ | ETA: 0:00:05 iterations: 1738 ratio_divergent_transitions: 0.0 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 15 is_accept: true acceptance_rate: 0.9864261393842907 log_density: -20.670292409419805 hamiltonian_energy: 22.677537262017402 hamiltonian_energy_error: 0.016071736063349107 max_hamiltonian_energy_error: 0.10234772293589955 tree_depth: 4 numerical_error: false step_size: 0.3415458588325662 nom_step_size: 0.3415458588325662 is_adapt: false mass_matrix: DiagEuclideanMetric([0.07941925770421532, 0.007 ...])                                   Sampling 100%|███████████████████████████████| Time: 0:00:31 iterations: 2000 ratio_divergent_transitions: 0.0 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 31 is_accept: true acceptance_rate: 0.9600335817022774 log_density: -22.05999478372548 hamiltonian_energy: 22.74683311158851 hamiltonian_energy_error: 0.29673105948236866 max_hamiltonian_energy_error: -0.4230296622925671 tree_depth: 4 numerical_error: false step_size: 0.3415458588325662 nom_step_size: 0.3415458588325662 is_adapt: false mass_matrix: DiagEuclideanMetric([0.07941925770421532, 0.007 ...]) [ Info: Found initial step size 1.6 ┌ Warning: The level of numerical errors is high. Please check the model carefully. └ @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:275 Sampling 20%|██████▎ | ETA: 0:01:04 iterations: 2 ratio_divergent_transitions: 0.5 ratio_divergent_transitions_during_adaption: 0.5 n_steps: 1 is_accept: true acceptance_rate: 0.0 log_density: -20.661108603297244 hamiltonian_energy: 26.4011889936216 hamiltonian_energy_error: 0.0 max_hamiltonian_energy_error: 6.447929222357481e10 tree_depth: 0 numerical_error: true step_size: 4.1241644442409005 nom_step_size: 4.1241644442409005 is_adapt: false mass_matrix: DiagEuclideanMetric([1.0, 1.0, 1.0, 1.0, 1.0, 1 ...])                 ┌ Warning: The level of numerical errors is high. Please check the model carefully. └ @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:275 ┌ Warning: The level of numerical errors is high. Please check the model carefully. └ @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:275                  Sampling 100%|███████████████████████████████| Time: 0:00:16 iterations: 10 ratio_divergent_transitions: 0.9 ratio_divergent_transitions_during_adaption: 0.1 n_steps: 1 is_accept: true acceptance_rate: 0.0 log_density: -20.661108603297244 hamiltonian_energy: 23.9472999718884 hamiltonian_energy_error: 0.0 max_hamiltonian_energy_error: 3.13413138757569e11 tree_depth: 0 numerical_error: true step_size: 4.1241644442409005 nom_step_size: 4.1241644442409005 is_adapt: false mass_matrix: DiagEuclideanMetric([1.0, 1.0, 1.0, 1.0, 1.0, 1 ...]) Test Summary: | Pass Total Time MCMCChains extension | 13 13 1m33.8s ┌ Warning: `VarName(sym::Symbol)` is deprecated, use `VarName{sym}()` instead. │ caller = ip:0x0 └ @ Core :-1 Test Summary: | Pass Total Time BayesianNetwork | 99 99 12.5s Testing JuliaBUGS tests passed Testing completed after 1568.72s PkgEval succeeded after 2503.84s