Package evaluation of GNNGraphs on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-15T01:43:37.514 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.03s ################################################################################ # Installation # Installing GNNGraphs... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [aed8fd31] + GNNGraphs v1.4.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [a963bdd2] + AtomsBase v0.5.1 [ab4f0b2a] + BFloat16s v0.5.1 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [e1450e63] + BufferedStreams v1.2.2 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.25.2 [46823bd8] + Chemfiles v0.10.42 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [53c48c17] + FixedPointNumbers v0.8.5 [d9f16b24] + Functors v0.5.2 [aed8fd31] + GNNGraphs v1.4.2 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [4e3cecfd] + ImageShow v0.3.8 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.4 [7d512f48] + InternedStrings v0.7.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.37 [0b1a1467] + KrylovKit v0.9.5 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [23992714] + MAT v0.10.7 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.11.0 [eb30cadb] + MLDatasets v0.7.18 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [872c559c] + NNlib v0.9.30 [15e1cf62] + NPZ v0.4.3 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.22 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [fbb45041] + Pickle v0.3.6 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [171d559e] + SplittablesBase v0.1.15 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4db3bf67] + StridedViews v0.4.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.23.1 [a7773ee8] + UnitfulAtomic v1.0.0 [013be700] + UnsafeAtomics v0.3.0 [409d34a3] + VectorInterface v0.5.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [78a364fa] + Chemfiles_jll v0.10.4+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 8.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 Precompiling package dependencies... Precompilation completed after 459.87s ################################################################################ # Testing # Testing GNNGraphs Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_NH62f4/Project.toml` [26cc04aa] + FiniteDifferences v0.12.32 ⌅ [46192b85] ↓ GPUArraysCore v0.2.0 ⇒ v0.1.6 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [860ef19b] + StableRNGs v1.0.3 [f8b46487] + TestItemRunner v1.1.0 [1c621080] + TestItems v1.0.0 [e88e6eb3] + Zygote v0.7.10 Updating `/tmp/jl_NH62f4/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [082447d4] + ChainRules v1.72.5 [bbf7d656] + CommonSubexpressions v0.3.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [1a297f60] + FillArrays v1.13.0 [26cc04aa] + FiniteDifferences v0.12.32 [f6369f11] + ForwardDiff v1.0.1 ⌅ [46192b85] ↓ GPUArraysCore v0.2.0 ⇒ v0.1.6 [7869d1d1] + IRTools v0.4.15 [77ba4419] + NaNMath v1.1.3 [c1ae055f] + RealDot v0.1.0 [708f8203] + Richardson v1.4.2 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.1 [860ef19b] + StableRNGs v1.0.3 ⌃ [09ab397b] + StructArrays v0.6.18 [f8b46487] + TestItemRunner v1.1.0 [1c621080] + TestItems v1.0.0 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [4607b0f0] + SuiteSparse [05823500] + OpenLibm_jll v0.8.5+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_NH62f4/Project.toml` [26cc04aa] FiniteDifferences v0.12.32 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 ⌅ [46192b85] GPUArraysCore v0.1.6 [86223c79] Graphs v1.13.0 [7e8f7934] MLDataDevices v1.11.0 [eb30cadb] MLDatasets v0.7.18 [f1d291b0] MLUtils v0.4.8 [872c559c] NNlib v0.9.30 [189a3867] Reexport v1.2.2 [47aef6b3] SimpleWeightedGraphs v1.5.0 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.12.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NH62f4/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.1 [a963bdd2] AtomsBase v0.5.1 [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [46823bd8] Chemfiles v0.10.42 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 ⌅ [46192b85] GPUArraysCore v0.1.6 [92fee26a] GZip v0.6.2 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.15 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [4e3cecfd] ImageShow v0.3.8 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.4 [7d512f48] InternedStrings v0.7.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.37 [0b1a1467] KrylovKit v0.9.5 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [23992714] MAT v0.10.7 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.11.0 [eb30cadb] MLDatasets v0.7.18 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [739be429] MbedTLS v1.1.9 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [872c559c] NNlib v0.9.30 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [b8a86587] NearestNeighbors v0.4.22 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [fbb45041] Pickle v0.3.6 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.3 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4db3bf67] StridedViews v0.4.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 ⌃ [09ab397b] StructArrays v0.6.18 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.23.1 [a7773ee8] UnitfulAtomic v1.0.0 [013be700] UnsafeAtomics v0.3.0 [409d34a3] VectorInterface v0.5.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [a5390f91] ZipFile v0.10.1 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [78a364fa] Chemfiles_jll v0.10.4+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 19236.1 ms ✓ NNlib 29649.3 ms ✓ MLUtils 2 dependencies successfully precompiled in 51 seconds. 97 already precompiled. Precompiling packages... 5867.3 ms ✓ StructArrays 2704.4 ms ✓ ZygoteRules 10342.7 ms ✓ ForwardDiff 890.4 ms ✓ StructArrays → StructArraysAdaptExt 1377.8 ms ✓ StructArrays → StructArraysSparseArraysExt 892.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 13040.9 ms ✓ ChainRules 72375.2 ms ✓ Zygote 8 dependencies successfully precompiled in 109 seconds. 59 already precompiled. Precompiling packages... 1177.5 ms ✓ Accessors → StructArraysExt 1 dependency successfully precompiled in 1 seconds. 19 already precompiled. Precompiling packages... 1343.4 ms ✓ BangBang → BangBangStructArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling packages... 1811.7 ms ✓ StructArrays → StructArraysStaticArraysExt 1 dependency successfully precompiled in 2 seconds. 18 already precompiled. Precompiling packages... 3420.3 ms ✓ NNlib → NNlibSpecialFunctionsExt 1 dependency successfully precompiled in 4 seconds. 43 already precompiled. Precompiling packages... 4625.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3655.5 ms ✓ NNlib → NNlibForwardDiffExt 2 dependencies successfully precompiled in 9 seconds. 49 already precompiled. Precompiling packages... 1996.0 ms ✓ MLDataDevices 1 dependency successfully precompiled in 2 seconds. 13 already precompiled. Precompiling packages... 1593.4 ms ✓ MLDataDevices → MLDataDevicesChainRulesCoreExt 1451.2 ms ✓ MLDataDevices → MLDataDevicesSparseArraysExt 6012.7 ms ✓ MLDataDevices → MLDataDevicesMLUtilsExt 3 dependencies successfully precompiled in 10 seconds. 101 already precompiled. Precompiling packages... 986.6 ms ✓ MLDataDevices → MLDataDevicesFillArraysExt 2292.9 ms ✓ MLDataDevices → MLDataDevicesChainRulesExt 5853.2 ms ✓ MLDataDevices → MLDataDevicesZygoteExt 3 dependencies successfully precompiled in 10 seconds. 71 already precompiled. Precompiling packages... 5898.1 ms ✓ AtomsBase 8144.2 ms ✓ ImageShow 5931.0 ms ✓ Pickle 93021.5 ms ✓ DataFrames 54066.1 ms ✓ JLD2 10875.5 ms ✓ Graphs 8431.8 ms ✓ MAT 6920.1 ms ✓ Chemfiles 9193.7 ms ✓ BangBang → BangBangDataFramesExt 7762.0 ms ✓ Transducers → TransducersDataFramesExt 35741.8 ms ✓ MLDatasets 15471.3 ms ✓ GNNGraphs 12 dependencies successfully precompiled in 267 seconds. 212 already precompiled. Precompiling packages... 10360.9 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 71 already precompiled. Precompiling packages... 12397.7 ms ✓ SimpleWeightedGraphs 1 dependency successfully precompiled in 14 seconds. 32 already precompiled. Precompiling packages... 36776.8 ms ✓ ImageCore 94534.5 ms ✓ DataFrames 53545.5 ms ✓ JLD2 4313.8 ms ✓ ImageBase 9595.2 ms ✓ BangBang → BangBangDataFramesExt 7585.3 ms ✓ Transducers → TransducersDataFramesExt 8176.9 ms ✓ ImageShow 7716.8 ms ✓ GNNGraphs → GNNGraphsSimpleWeightedGraphsExt 8 dependencies successfully precompiled in 227 seconds. 218 already precompiled. Unbound or partitioned GlobalRef not allowed in value position Internal error: during type inference of _pullback(Zygote.Context{false}, var"##367".var"#2#3", Array{Float64, 2}) Encountered unexpected error in runtime: ErrorException("IR verification failed.\n Code location: /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/datastore.jl:80\n Method instance: MethodInstance for ZygoteRules._pullback(::Zygote.Context{false}, ::Main.var\"##367\".var\"#2#3\", ::Matrix{Float64})") error at ./error.jl:54 unknown function (ip: 0x78715039460a) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] jl_f_invokelatest at /source/src/builtins.c:875 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 raise_error at ./../usr/share/julia/Compiler/src/ssair/verify.jl:125 jfptr_raise_error_47947.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 check_op at ./../usr/share/julia/Compiler/src/ssair/verify.jl:71 verify_ir at ./../usr/share/julia/Compiler/src/ssair/verify.jl:429 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1043 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002 jfptr_optimize_117736.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202 jfptr_finish_nocycle_120318.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4500 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1259 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1442 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1451 jfptr_typeinf_ext_toplevel_121101.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3602 _jl_invoke at /source/src/gf.c:4092 [inlined] ijl_apply_generic at /source/src/gf.c:4300 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 [inlined] gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 unknown function (ip: 0x787150394006) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/datastore.jl:80 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2837 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] jl_f_invokelatest at /source/src/builtins.c:875 #run_testitem##6 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #run_testitem##4 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x7871605cb606) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x7871605cb24e) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 #run_tests#7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/runtests.jl:24 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2837 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 _include at ./loading.jl:2897 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_102481.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at none:6 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:287 _start at ./client.jl:554 jfptr__start_81451.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x78717d220249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S [267] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/datastore.jl:80 unknown function (ip: 0x78717d283ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_type_infer at /source/src/gf.c:481 jl_compile_method_internal at /source/src/gf.c:3602 _jl_invoke at /source/src/gf.c:4092 [inlined] ijl_apply_generic at /source/src/gf.c:4300 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 [inlined] gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 unknown function (ip: 0x787150394006) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2837 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] jl_f_invokelatest at /source/src/builtins.c:875 #run_testitem##6 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #run_testitem##4 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x7871605cb606) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x7871605cb24e) at (unknown file) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 #run_tests#7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2837 _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 _include at ./loading.jl:2897 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_102481.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:287 _start at ./client.jl:554 jfptr__start_81451.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4100 [inlined] ijl_apply_generic at /source/src/gf.c:4300 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x78717d220249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 443482451 (Pool: 443478332; Big: 4119); GC: 195 Testing failed after 1532.72s ERROR: LoadError: Package GNNGraphs errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 2044.21s: an internal error was encountered