Package evaluation of EcoBase on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T11:02:56.035


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.82s


################################################################################
# Installation
#

Installing EcoBase...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [a58aae7d] + EcoBase v0.1.7
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [a58aae7d] + EcoBase v0.1.7
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [3cdcf5f2] + RecipesBase v1.3.4
  [ade2ca70] + Dates v1.11.0
  [de0858da] + Printf v1.11.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0

Installation completed after 1.0s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
ERROR: LoadError: The following 1 direct dependency failed to precompile:

SpatialEcology 

Failed to precompile SpatialEcology [348f2d5d-71a3-5ad4-b565-8af070f99681] to "/home/pkgeval/.julia/compiled/v1.12/SpatialEcology/jl_1P2Ibr".
WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology.
ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:306
  [3] top-level scope
    @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2991
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
  [9] include_string
    @ ./loading.jl:2847 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [11] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4
in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 200.8s



################################################################################
# Testing
#

     Testing EcoBase
      Status `/tmp/jl_4vxWXc/Project.toml`
  [d3d5718d] Diversity v0.5.15
  [a58aae7d] EcoBase v0.1.7
  [d7ba0133] Git v1.4.0
⌅ [98e50ef6] JuliaFormatter v1.0.62
  [3cdcf5f2] RecipesBase v1.3.4
  [58378933] ResearchSoftwareMetadata v0.1.5
  [348f2d5d] SpatialEcology v0.9.16
  [56ddb016] Logging v1.11.0
  [44cfe95a] Pkg v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_4vxWXc/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [d1d4a3ce] BitFlags v0.1.9
  [00ebfdb7] CSTParser v3.4.3
⌅ [8be319e6] Chain v0.5.0
  [944b1d66] CodecZlib v0.7.8
⌅ [a80b9123] CommonMark v0.8.16
  [34da2185] Compat v4.17.0
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
⌅ [1313f7d8] DataFramesMeta v0.14.1
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.10.12
  [d3d5718d] Diversity v0.5.15
  [ffbed154] DocStringExtensions v0.9.5
  [a58aae7d] EcoBase v0.1.7
  [460bff9d] ExceptionUnwrapping v0.1.11
  [d7ba0133] Git v1.4.0
  [c27321d9] Glob v1.3.1
  [cd3eb016] HTTP v1.10.17
  [842dd82b] InlineStrings v1.4.4
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
⌅ [98e50ef6] JuliaFormatter v1.0.62
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
  [1914dd2f] MacroTools v0.5.16
  [739be429] MbedTLS v1.1.9
  [e1d29d7a] Missings v1.2.0
  [4d8831e6] OpenSSL v1.5.0
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [43287f4e] PtrArrays v1.3.0
  [9ae346a0] RandomBooleanMatrices v0.1.2
  [e6cf234a] RandomNumbers v1.6.0
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [58378933] ResearchSoftwareMetadata v0.1.5
  [91c51154] SentinelArrays v1.4.8
  [777ac1f9] SimpleBufferStream v1.2.0
  [a2af1166] SortingAlgorithms v1.2.1
  [348f2d5d] SpatialEcology v0.9.16
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.5
  [69024149] StringEncodings v0.3.7
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [0796e94c] Tokenize v0.5.29
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.6.1
  [ddb6d928] YAML v0.4.14
  [2e619515] Expat_jll v2.6.5+0
  [f8c6e375] Git_jll v2.50.0+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [c8ffd9c3] MbedTLS_jll v2.28.6+2
  [9bd350c2] OpenSSH_jll v10.0.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.5.20
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.1+0
  [efcefdf7] PCRE2_jll v10.44.0+1
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...

[ Info: Potentially missing tests:
    - DataTypes.jl
    - EcoBase.jl
    - PlotRecipes.jl


[ Info: Running tests for files:
    = Interface.jl

[ Info: Running tests...
    * Testing Interface.jl ...
Precompiling packages...
Info Given SpatialEcology was explicitly requested, output will be shown live 
WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology.
ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:306
  [3] top-level scope
    @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2991
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2837
  [9] include_string
    @ ./loading.jl:2847 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:319
 [11] _start()
    @ Base ./client.jl:554
in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4
in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2
in expression starting at stdin:5
           ✗ SpatialEcology
  0 dependencies successfully precompiled in 12 seconds. 55 already precompiled.

t = Interface: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/runtests.jl:60
  Got exception outside of a @test
  LoadError: The following 1 direct dependency failed to precompile:
  
  SpatialEcology 
  
  Failed to precompile SpatialEcology [348f2d5d-71a3-5ad4-b565-8af070f99681] to "/home/pkgeval/.julia/compiled/v1.12/SpatialEcology/jl_lh2DuT".
  WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology.
  ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist
  Stacktrace:
    [1] top-level scope
      @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4
    [2] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:306
    [3] top-level scope
      @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53
    [4] include(mod::Module, _path::String)
      @ Base ./Base.jl:305
    [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
      @ Base ./loading.jl:2991
    [6] top-level scope
      @ stdin:5
    [7] eval(m::Module, e::Any)
      @ Core ./boot.jl:489
    [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
      @ Base ./loading.jl:2837
    [9] include_string
      @ ./loading.jl:2847 [inlined]
   [10] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:319
   [11] _start()
      @ Base ./client.jl:554
  in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4
  in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2
  in expression starting at stdin:
  in expression starting at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/test_Interface.jl:3
Test Summary:   | Pass  Error  Total   Time
EcoBase.jl      |    1      1      2  19.3s
  t = Interface |           1      1  18.2s
RNG of the outermost testset: Xoshiro(0x9951797c85a704f1, 0xb9d66be14dfba82b, 0xb170153285fd9556, 0xe90a07f7bdd1fd77, 0x9d4b5ee33e4bd661)
ERROR: LoadError: Some tests did not pass: 1 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/runtests.jl:10

Testing failed after 37.27s

ERROR: LoadError: Package EcoBase errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:305
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:321
 [12] _start()
    @ Base ./client.jl:554
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 267.03s: package fails to precompile