Package evaluation of Devito on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T21:40:29.706 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.46s ################################################################################ # Installation # Installing Devito... Resolving package versions... Installed Conda ── v1.10.2 Installed Devito ─ v1.0.0 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.12/Project.toml` [06ed14b1] + Devito v1.0.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [8f4d0f93] + Conda v1.10.2 [06ed14b1] + Devito v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [ae029012] + Requires v1.3.1 ⌅ [5e0ebb24] + Strided v1.2.3 [9d95972d] + TupleTools v1.6.0 [81def892] + VersionParsing v1.3.0 [e33a78d0] + Hwloc_jll v2.12.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building Devito → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7c24bba307e46f20017fed2691f3fedbdc4fe348/build.log` Installation failed after 177.7s ERROR: LoadError: Error building `Devito`: Collecting devito[extras,tests] Downloading devito-4.8.19-py3-none-any.whl.metadata (10 kB) Requirement already satisfied: pip>=9.0.1 in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from devito[extras,tests]) (25.1.1) Collecting numpy<2.3.1,>=2 (from devito[extras,tests]) Downloading numpy-2.3.0-cp312-cp312-manylinux_2_28_x86_64.whl.metadata (62 kB) Collecting sympy<1.15,>=1.12.1 (from devito[extras,tests]) Downloading sympy-1.14.0-py3-none-any.whl.metadata (12 kB) Collecting psutil<8.0,>=5.1.0 (from devito[extras,tests]) Downloading psutil-7.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (22 kB) Collecting py-cpuinfo<10 (from devito[extras,tests]) Downloading py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting cgen<2021,>=2020.1 (from devito[extras,tests]) Downloading cgen-2020.1.tar.gz (19 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting codepy<2025,>=2019.1 (from devito[extras,tests]) Downloading codepy-2023.1.tar.gz (21 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting multidict<6.3 (from devito[extras,tests]) Downloading multidict-6.2.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.9 kB) Collecting anytree<=2.13.0,>=2.4.3 (from devito[extras,tests]) Downloading anytree-2.13.0-py3-none-any.whl.metadata (8.0 kB) Collecting cloudpickle<3.1.2 (from devito[extras,tests]) Downloading cloudpickle-3.1.1-py3-none-any.whl.metadata (7.1 kB) Requirement already satisfied: packaging<25.1 in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from devito[extras,tests]) (25.0) Collecting pytest<8.5,>=7.2 (from devito[extras,tests]) Downloading pytest-8.4.1-py3-none-any.whl.metadata (7.7 kB) Collecting pytest-runner<6.0.2 (from devito[extras,tests]) Downloading pytest_runner-6.0.1-py3-none-any.whl.metadata (7.3 kB) Collecting pytest-cov<6.2.2 (from devito[extras,tests]) Downloading pytest_cov-6.2.1-py3-none-any.whl.metadata (30 kB) Collecting flake8-pyproject<1.2.4,>=1.2.3 (from devito[extras,tests]) Downloading flake8_pyproject-1.2.3-py3-none-any.whl.metadata (2.9 kB) Collecting nbval<0.11.1 (from devito[extras,tests]) Downloading nbval-0.11.0-py2.py3-none-any.whl.metadata (6.7 kB) Collecting scipy<1.15.3 (from devito[extras,tests]) Downloading scipy-1.15.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting pooch<1.8.3 (from devito[extras,tests]) Downloading pooch-1.8.2-py3-none-any.whl.metadata (10 kB) Collecting click<9.0 (from devito[extras,tests]) Downloading click-8.2.1-py3-none-any.whl.metadata (2.5 kB) Collecting matplotlib<3.10.2 (from devito[extras,tests]) Downloading matplotlib-3.10.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) Collecting pillow<11.2.2,>11 (from devito[extras,tests]) Downloading pillow-11.2.1-cp312-cp312-manylinux_2_28_x86_64.whl.metadata (8.9 kB) Collecting pyrevolve==2.2.4 (from devito[extras,tests]) Downloading pyrevolve-2.2.4.tar.gz (260 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting distributed<2025.4.2 (from devito[extras,tests]) Downloading distributed-2025.4.1-py3-none-any.whl.metadata (3.4 kB) Collecting contexttimer (from pyrevolve==2.2.4->devito[extras,tests]) Downloading contexttimer-0.3.3.tar.gz (4.9 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pytools>=2015.1.2 (from cgen<2021,>=2020.1->devito[extras,tests]) Downloading pytools-2025.2.1-py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: platformdirs>=2.2.0 in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from codepy<2025,>=2019.1->devito[extras,tests]) (4.3.8) Collecting dask==2025.4.1 (from distributed<2025.4.2->devito[extras,tests]) Downloading dask-2025.4.1-py3-none-any.whl.metadata (3.8 kB) Collecting jinja2>=2.10.3 (from distributed<2025.4.2->devito[extras,tests]) Downloading jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting locket>=1.0.0 (from distributed<2025.4.2->devito[extras,tests]) Downloading locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) Collecting msgpack>=1.0.2 (from distributed<2025.4.2->devito[extras,tests]) 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/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from distributed<2025.4.2->devito[extras,tests]) (2.4.0) Collecting zict>=3.0.0 (from distributed<2025.4.2->devito[extras,tests]) Downloading zict-3.0.0-py2.py3-none-any.whl.metadata (899 bytes) Collecting fsspec>=2021.09.0 (from dask==2025.4.1->distributed<2025.4.2->devito[extras,tests]) Downloading fsspec-2025.5.1-py3-none-any.whl.metadata (11 kB) Collecting partd>=1.4.0 (from dask==2025.4.1->distributed<2025.4.2->devito[extras,tests]) Downloading partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) Collecting Flake8>=5 (from flake8-pyproject<1.2.4,>=1.2.3->devito[extras,tests]) Downloading flake8-7.3.0-py2.py3-none-any.whl.metadata (3.8 kB) Collecting contourpy>=1.0.1 (from matplotlib<3.10.2->devito[extras,tests]) Downloading contourpy-1.3.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.5 kB) Collecting cycler>=0.10 (from matplotlib<3.10.2->devito[extras,tests]) Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib<3.10.2->devito[extras,tests]) Downloading fonttools-4.58.5-cp312-cp312-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (106 kB) Collecting kiwisolver>=1.3.1 (from matplotlib<3.10.2->devito[extras,tests]) Downloading kiwisolver-1.4.8-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.2 kB) Collecting pyparsing>=2.3.1 (from matplotlib<3.10.2->devito[extras,tests]) Downloading pyparsing-3.2.3-py3-none-any.whl.metadata (5.0 kB) Collecting python-dateutil>=2.7 (from matplotlib<3.10.2->devito[extras,tests]) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting jupyter-client (from nbval<0.11.1->devito[extras,tests]) Downloading jupyter_client-8.6.3-py3-none-any.whl.metadata (8.3 kB) Collecting nbformat (from nbval<0.11.1->devito[extras,tests]) Downloading nbformat-5.10.4-py3-none-any.whl.metadata (3.6 kB) Collecting ipykernel (from nbval<0.11.1->devito[extras,tests]) Downloading ipykernel-6.29.5-py3-none-any.whl.metadata (6.3 kB) Collecting coverage (from nbval<0.11.1->devito[extras,tests]) Downloading coverage-7.9.2-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.9 kB) Requirement already satisfied: requests>=2.19.0 in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from pooch<1.8.3->devito[extras,tests]) (2.32.3) Collecting iniconfig>=1 (from pytest<8.5,>=7.2->devito[extras,tests]) Downloading iniconfig-2.1.0-py3-none-any.whl.metadata (2.7 kB) Requirement already satisfied: pluggy<2,>=1.5 in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from pytest<8.5,>=7.2->devito[extras,tests]) (1.5.0) Collecting pygments>=2.7.2 (from pytest<8.5,>=7.2->devito[extras,tests]) Downloading pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB) Collecting mpmath<1.4,>=1.1.0 (from 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for collected packages: pyrevolve, cgen, codepy, contexttimer DEPRECATION: Building 'pyrevolve' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyrevolve'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for pyrevolve (setup.py): started Building wheel for pyrevolve (setup.py): finished with status 'done' Created wheel for pyrevolve: filename=pyrevolve-2.2.4-cp312-cp312-linux_x86_64.whl size=89550 sha256=7274e88c3754d63eff98c825efb4e3a6ca9bef37164656bb2a9377b4998c6d9e Stored in directory: /tmp/pip-ephem-wheel-cache-f67kagxg/wheels/1a/3c/0b/91757d248cd5fd3fc6df659211fb1757fb236996ed09d197a5 DEPRECATION: Building 'cgen' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'cgen'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for cgen (setup.py): started Building wheel for cgen (setup.py): finished with status 'done' Created wheel for cgen: filename=cgen-2020.1-py3-none-any.whl size=15902 sha256=bf44c27c5b588e4e35cedc62634583d5f6f5d6474b394780a6a5648e37623dfa Stored in directory: /tmp/pip-ephem-wheel-cache-f67kagxg/wheels/fa/a0/f8/8aa730ffcc2523e16be9b5566e16c8e09b1a48bb8946e4b2c3 DEPRECATION: Building 'codepy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'codepy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for codepy (setup.py): started Building wheel for codepy (setup.py): finished with status 'done' Created wheel for codepy: filename=codepy-2023.1-py3-none-any.whl size=24953 sha256=851252d3163627d70d1cfff42f9b5c00243fc31b2b47f4872e623ad9659df3bb Stored in directory: /tmp/pip-ephem-wheel-cache-f67kagxg/wheels/7b/21/b4/eb0113a4755aadd5f4a27788f1a457d0117f376b9d526c52c3 DEPRECATION: Building 'contexttimer' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'contexttimer'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for contexttimer (setup.py): started Building wheel for contexttimer (setup.py): finished with status 'done' Created wheel for contexttimer: filename=contexttimer-0.3.3-py3-none-any.whl size=5851 sha256=e33db11ff737e2b511e2c5c44755e473d266e7500569165e4fd378fcfb164f71 Stored in directory: /tmp/pip-ephem-wheel-cache-f67kagxg/wheels/45/36/a8/dd6e40dc57caa08493661ba415956ca660c417424d8f487ab6 Successfully built pyrevolve cgen codepy contexttimer Installing collected packages: wcwidth, sortedcontainers, py-cpuinfo, pure-eval, ptyprocess, mpmath, fastjsonschema, contexttimer, zict, typing-extensions, traitlets, tornado, toolz, tblib, sympy, six, siphash24, rpds-py, pyzmq, pyyaml, pytest-runner, pyrevolve, pyparsing, pygments, pyflakes, pycodestyle, psutil, prompt_toolkit, pillow, pexpect, parso, numpy, nest-asyncio, multidict, msgpack, mccabe, MarkupSafe, locket, kiwisolver, iniconfig, fsspec, fonttools, executing, decorator, debugpy, cycler, coverage, cloudpickle, click, attrs, asttokens, anytree, stack_data, scipy, referencing, pytools, python-dateutil, pytest, pooch, partd, matplotlib-inline, jupyter-core, jinja2, jedi, ipython-pygments-lexers, Flake8, contourpy, comm, pytest-cov, matplotlib, jupyter-client, jsonschema-specifications, ipython, flake8-pyproject, dask, cgen, jsonschema, ipykernel, distributed, codepy, nbformat, devito, nbval Attempting uninstall: numpy Found existing installation: numpy 2.3.1 Uninstalling numpy-2.3.1: Successfully uninstalled numpy-2.3.1 Successfully installed Flake8-7.3.0 MarkupSafe-3.0.2 anytree-2.13.0 asttokens-3.0.0 attrs-25.3.0 cgen-2020.1 click-8.2.1 cloudpickle-3.1.1 codepy-2023.1 comm-0.2.2 contexttimer-0.3.3 contourpy-1.3.2 coverage-7.9.2 cycler-0.12.1 dask-2025.4.1 debugpy-1.8.14 decorator-5.2.1 devito-4.8.19 distributed-2025.4.1 executing-2.2.0 fastjsonschema-2.21.1 flake8-pyproject-1.2.3 fonttools-4.58.5 fsspec-2025.5.1 iniconfig-2.1.0 ipykernel-6.29.5 ipython-9.4.0 ipython-pygments-lexers-1.1.1 jedi-0.19.2 jinja2-3.1.6 jsonschema-4.24.0 jsonschema-specifications-2025.4.1 jupyter-client-8.6.3 jupyter-core-5.8.1 kiwisolver-1.4.8 locket-1.0.0 matplotlib-3.10.1 matplotlib-inline-0.1.7 mccabe-0.7.0 mpmath-1.3.0 msgpack-1.1.1 multidict-6.2.0 nbformat-5.10.4 nbval-0.11.0 nest-asyncio-1.6.0 numpy-2.3.0 parso-0.8.4 partd-1.4.2 pexpect-4.9.0 pillow-11.2.1 pooch-1.8.2 prompt_toolkit-3.0.51 psutil-7.0.0 ptyprocess-0.7.0 pure-eval-0.2.3 py-cpuinfo-9.0.0 pycodestyle-2.14.0 pyflakes-3.4.0 pygments-2.19.2 pyparsing-3.2.3 pyrevolve-2.2.4 pytest-8.4.1 pytest-cov-6.2.1 pytest-runner-6.0.1 python-dateutil-2.9.0.post0 pytools-2025.2.1 pyyaml-6.0.2 pyzmq-27.0.0 referencing-0.36.2 rpds-py-0.26.0 scipy-1.15.2 siphash24-1.7 six-1.17.0 sortedcontainers-2.4.0 stack_data-0.6.3 sympy-1.14.0 tblib-3.1.0 toolz-1.0.0 tornado-6.5.1 traitlets-5.14.3 typing-extensions-4.14.1 wcwidth-0.2.13 zict-3.0.0 Collecting mpi4py<4.1.1 (from -r https://raw.githubusercontent.com/devitocodes/devito/main/requirements-mpi.txt (line 1)) Downloading mpi4py-4.1.0-cp312-cp312-manylinux1_x86_64.manylinux_2_5_x86_64.whl.metadata (16 kB) Collecting ipyparallel<9.1 (from -r https://raw.githubusercontent.com/devitocodes/devito/main/requirements-mpi.txt (line 2)) Downloading ipyparallel-9.0.1-py3-none-any.whl.metadata (6.3 kB) Requirement already satisfied: decorator in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from ipyparallel<9.1->-r https://raw.githubusercontent.com/devitocodes/devito/main/requirements-mpi.txt (line 2)) (5.2.1) Requirement already satisfied: ipykernel>=6.9.1 in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from ipyparallel<9.1->-r https://raw.githubusercontent.com/devitocodes/devito/main/requirements-mpi.txt (line 2)) (6.29.5) Requirement already satisfied: ipython>=5 in /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages (from ipyparallel<9.1->-r 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kB) Downloading propcache-0.3.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (224 kB) Downloading argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (86 kB) Downloading beautifulsoup4-4.13.4-py3-none-any.whl (187 kB) Downloading soupsieve-2.7-py3-none-any.whl (36 kB) Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Downloading fqdn-1.5.1-py3-none-any.whl (9.1 kB) Downloading isoduration-20.11.0-py3-none-any.whl (11 kB) Downloading arrow-1.3.0-py3-none-any.whl (66 kB) Downloading types_python_dateutil-2.9.0.20250708-py3-none-any.whl (17 kB) Downloading jupyterlab_pygments-0.3.0-py3-none-any.whl (15 kB) Downloading rfc3339_validator-0.1.4-py2.py3-none-any.whl (3.5 kB) Downloading uri_template-1.3.0-py3-none-any.whl (11 kB) Installing collected packages: webencodings, pytz, nvidia-ml-py, fastrlock, xyzservices, websocket-client, webcolors, uri-template, tzdata, types-python-dateutil, tinycss2, terminado, soupsieve, sniffio, simpervisor, send2trash, rfc3986-validator, rfc3339-validator, python-json-logger, pynvml, propcache, prometheus-client, pandocfilters, overrides, numpy, narwhals, mistune, llvmlite, jupyterlab-pygments, json5, h11, frozenlist, fqdn, defusedxml, bleach, babel, async-lru, aiohappyeyeballs, yarl, pandas, numba, jupyter-server-terminals, httpcore, dask, cupy-cuda12x, beautifulsoup4, arrow, argon2-cffi-bindings, anyio, aiosignal, isoduration, httpx, distributed, bokeh, argon2-cffi, aiohttp, rapids-dask-dependency, nbclient, jupyter-events, dask-cuda, nbconvert, jupyter-server, notebook-shim, jupyterlab-server, jupyter-server-proxy, jupyter-lsp, jupyterlab, jupyterlab-nvdashboard, dask_labextension Attempting uninstall: numpy Found existing installation: numpy 2.3.0 Uninstalling numpy-2.3.0: Successfully uninstalled numpy-2.3.0 Attempting uninstall: dask Found existing installation: dask 2025.4.1 Uninstalling dask-2025.4.1: Successfully uninstalled dask-2025.4.1 Attempting uninstall: distributed Found existing installation: distributed 2025.4.1 Uninstalling distributed-2025.4.1: Successfully uninstalled distributed-2025.4.1 Successfully installed aiohappyeyeballs-2.6.1 aiohttp-3.12.14 aiosignal-1.4.0 anyio-4.9.0 argon2-cffi-25.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 async-lru-2.0.5 babel-2.17.0 beautifulsoup4-4.13.4 bleach-6.2.0 bokeh-3.7.3 cupy-cuda12x-13.5.1 dask-2025.5.0 dask-cuda-25.6.0 dask_labextension-7.0.0 defusedxml-0.7.1 distributed-2025.5.0 fastrlock-0.8.3 fqdn-1.5.1 frozenlist-1.7.0 h11-0.16.0 httpcore-1.0.9 httpx-0.28.1 isoduration-20.11.0 json5-0.12.0 jupyter-events-0.12.0 jupyter-lsp-2.2.5 jupyter-server-2.16.0 jupyter-server-proxy-4.4.0 jupyter-server-terminals-0.5.3 jupyterlab-4.4.1 jupyterlab-nvdashboard-0.13.0 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.3 llvmlite-0.44.0 mistune-3.1.3 narwhals-1.47.0 nbclient-0.10.2 nbconvert-7.16.6 notebook-shim-0.2.4 numba-0.61.2 numpy-2.2.6 nvidia-ml-py-12.575.51 overrides-7.7.0 pandas-2.3.1 pandocfilters-1.5.1 prometheus-client-0.22.1 propcache-0.3.2 pynvml-12.0.0 python-json-logger-3.3.0 pytz-2025.2 rapids-dask-dependency-25.6.0 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 send2trash-1.8.3 simpervisor-1.0.0 sniffio-1.3.1 soupsieve-2.7 terminado-0.18.1 tinycss2-1.4.0 types-python-dateutil-2.9.0.20250708 tzdata-2025.2 uri-template-1.3.0 webcolors-24.11.1 webencodings-0.5.1 websocket-client-1.8.0 xyzservices-2025.4.0 yarl-1.20.1 [ Info: Devito not installed or broken [ Info: DevitoPRO not installed or broken [ Info: Building devito from latest release ERROR: LoadError: PyError (PyImport_ImportModule) RuntimeError('cannot load MPI library\n/home/pkgeval/.local/lib: cannot open shared object file: No such file or directory\n/home/pkgeval/.julia/conda/3/x86_64/lib/libmpi.so: cannot open shared object file: No such file or directory\n/home/pkgeval/.julia/conda/3/x86_64/lib/libmpi.so.12: cannot open shared object file: No such file or directory\n/home/pkgeval/.julia/conda/3/x86_64/lib/libmpi.so.40: cannot open shared object file: No such file or directory\nlibmpi.so: cannot open shared object file: No such file or directory\nlibmpi.so.12: cannot open shared object file: No such file or directory\nlibmpi.so.40: cannot open shared object file: No such file or directory') File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/__init__.py", line 11, in from devito.types import NODE, CELL, Buffer # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/types/__init__.py", line 20, in from .grid import * # noqa ^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/types/grid.py", line 11, in from devito.mpi import Distributor, MPI, SubDistributor File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/mpi/__init__.py", line 1, in from devito.mpi.distributed import * # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/mpi/distributed.py", line 28, in from mpi4py import MPI # noqa ^^^^^^^^^^^^^^^^^^^^^^ File "", line 1360, in _find_and_load File "", line 1322, in _find_and_load_unlocked File "", line 1262, in _find_spec File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 290, in find_spec mpiabi_suffix = _get_mpiabi_suffix(fullname) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 276, in _get_mpiabi_suffix mpiabi = _get_mpiabi() ^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 258, in _get_mpiabi mpiabi = _get_mpiabi_from_libmpi(libmpi) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 217, in _get_mpiabi_from_libmpi lib = _dlopen_libmpi(libmpi) ^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 210, in _dlopen_libmpi raise RuntimeError("\n".join(errors)) Stacktrace: [1] top-level scope @ ~/.julia/packages/Devito/hpHZ6/deps/build.jl:101 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [3] top-level scope @ none:5 [4] eval(m::Module, e::Any) @ Core ./boot.jl:489 [5] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [6] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/Devito/hpHZ6/deps/build.jl:58 caused by: PyError (PyImport_ImportModule) RuntimeError('cannot load MPI library\n/home/pkgeval/.local/lib: cannot open shared object file: No such file or directory\n/home/pkgeval/.julia/conda/3/x86_64/lib/libmpi.so: cannot open shared object file: No such file or directory\n/home/pkgeval/.julia/conda/3/x86_64/lib/libmpi.so.12: cannot open shared object file: No such file or directory\n/home/pkgeval/.julia/conda/3/x86_64/lib/libmpi.so.40: cannot open shared object file: No such file or directory\nlibmpi.so: cannot open shared object file: No such file or directory\nlibmpi.so.12: cannot open shared object file: No such file or directory\nlibmpi.so.40: cannot open shared object file: No such file or directory') File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/__init__.py", line 11, in from devito.types import NODE, CELL, Buffer # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/types/__init__.py", line 20, in from .grid import * # noqa ^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/types/grid.py", line 11, in from devito.mpi import Distributor, MPI, SubDistributor File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/mpi/__init__.py", line 1, in from devito.mpi.distributed import * # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/devito/mpi/distributed.py", line 28, in from mpi4py import MPI # noqa ^^^^^^^^^^^^^^^^^^^^^^ File "", line 1360, in _find_and_load File "", line 1322, in _find_and_load_unlocked File "", line 1262, in _find_spec File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 290, in find_spec mpiabi_suffix = _get_mpiabi_suffix(fullname) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 276, in _get_mpiabi_suffix mpiabi = _get_mpiabi() ^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 258, in _get_mpiabi mpiabi = _get_mpiabi_from_libmpi(libmpi) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 217, in _get_mpiabi_from_libmpi lib = _dlopen_libmpi(libmpi) ^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/mpi4py/_mpiabi.py", line 210, in _dlopen_libmpi raise RuntimeError("\n".join(errors)) Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] top-level scope @ ~/.julia/packages/Devito/hpHZ6/deps/build.jl:94 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ none:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [7] _start() @ Base ./client.jl:554 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] (::Pkg.Operations.var"#137#138"{Bool, Pkg.Types.Context, String, PackageSpec, String})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1459 [3] withenv(::Pkg.Operations.var"#137#138"{Bool, Pkg.Types.Context, String, PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:265 [4] (::Pkg.Operations.var"#198#199"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#137#138"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2237 [5] with_temp_env(fn::Pkg.Operations.var"#198#199"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#137#138"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2087 [6] (::Pkg.Operations.var"#194#195"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#137#138"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2196 [7] mktempdir(fn::Pkg.Operations.var"#194#195"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#137#138"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [8] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [9] #sandbox#190 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2143 [inlined] [10] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1440 [11] build_versions @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1358 [inlined] [12] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1759 [13] add @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1706 [inlined] [14] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:339 [15] add(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [16] add(pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 [17] add(pkg::PackageSpec) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [18] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:112 [19] include(mod::Module, _path::String) @ Base ./Base.jl:305 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [21] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:109 PkgEval skipped after 252.17s: package could not be installed