Package evaluation of ControlledHiddenMarkovModels on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T15:31:03.280 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.52s ################################################################################ # Installation # Installing ControlledHiddenMarkovModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [7732c362] + ControlledHiddenMarkovModels v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.17.0 [7732c362] + ControlledHiddenMarkovModels v0.1.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b429d917] + DensityInterface v0.4.0 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.5 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 36.48s ################################################################################ # Testing # Testing ControlledHiddenMarkovModels Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_bEiQsB/Project.toml` [4c88cf16] ↑ Aqua v0.5.5 ⇒ v0.8.13 [b0b7db55] ↑ ComponentArrays v0.13.1 ⇒ v0.15.28 [7732c362] + ControlledHiddenMarkovModels v0.1.0 [31c24e10] ↑ Distributions v0.25.66 ⇒ v0.25.120 [e30172f5] ↑ Documenter v0.27.22 ⇒ v1.14.1 [f6369f11] ↑ ForwardDiff v0.10.32 ⇒ v1.0.1 [98e50ef6] ↑ JuliaFormatter v1.0.9 ⇒ v2.1.2 [aa2f6b4e] ↑ LogarithmicNumbers v1.2.1 ⇒ v1.4.1 [7f7a1694] ↑ Optimization v3.8.2 ⇒ v4.4.0 [36348300] ↑ OptimizationOptimJL v0.1.2 ⇒ v0.4.3 [af0b7596] ↑ PointProcesses v0.3.1 ⇒ v0.5.0 [10745b16] + Statistics v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [9a3f8284] ~ Random ⇒ v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_bEiQsB/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [1520ce14] ↑ AbstractTrees v0.3.4 ⇒ v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] ↑ Adapt v3.4.0 ⇒ v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4c88cf16] ↑ Aqua v0.5.5 ⇒ v0.8.13 [4fba245c] ↑ ArrayInterface v6.0.22 ⇒ v7.19.0 [30b0a656] - ArrayInterfaceCore v0.1.17 [dd5226c6] - ArrayInterfaceStaticArraysCore v0.1.0 [00ebfdb7] - CSTParser v3.3.6 [49dc2e85] - Calculus v0.5.1 [d360d2e6] ↑ ChainRulesCore v1.15.3 ⇒ v1.25.2 [9e997f8a] - ChangesOfVariables v0.1.4 [944b1d66] + CodecZlib v0.7.8 [a80b9123] ↑ CommonMark v0.8.6 ⇒ v0.9.1 [38540f10] ↑ CommonSolve v0.2.1 ⇒ v0.2.4 [bbf7d656] ↑ CommonSubexpressions v0.3.0 ⇒ v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] ↑ Compat v3.45.0 ⇒ v4.17.0 [b0b7db55] ↑ ComponentArrays v0.13.1 ⇒ v0.15.28 [a33af91c] + CompositionsBase v0.1.2 [187b0558] ↑ ConstructionBase v1.4.0 ⇒ v1.6.0 [7732c362] + ControlledHiddenMarkovModels v0.1.0 [9a962f9c] ↑ DataAPI v1.10.0 ⇒ v1.16.0 [864edb3b] ↑ DataStructures v0.18.13 ⇒ v0.18.22 [8bb1440f] - DelimitedFiles [163ba53b] ↑ DiffResults v1.0.3 ⇒ v1.1.0 [b552c78f] ↑ DiffRules v1.11.0 ⇒ v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.2 [31c24e10] ↑ Distributions v0.25.66 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.1 ⇒ v0.9.5 [e30172f5] ↑ Documenter v0.27.22 ⇒ v1.14.1 [fa6b7ba4] - DualNumbers v0.6.8 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [9aa1b823] + FastClosures v0.3.2 [1a297f60] ↑ FillArrays v0.13.2 ⇒ v1.13.0 [6a86dc24] ↑ FiniteDiff v2.15.0 ⇒ v2.27.0 [f6369f11] ↑ ForwardDiff v0.10.32 ⇒ v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] ↑ GPUArraysCore v0.1.1 ⇒ v0.2.0 [d7ba0133] + Git v1.4.0 [c27321d9] + Glob v1.3.1 [34004b35] ↑ HypergeometricFunctions v0.3.11 ⇒ v0.3.28 [b5f81e59] ↑ IOCapture v0.2.2 ⇒ v0.2.5 [3587e190] ↑ InverseFunctions v0.1.7 ⇒ v0.1.17 [92d709cd] ↑ IrrationalConstants v0.1.1 ⇒ v0.2.4 [692b3bcd] ↑ JLLWrappers v1.4.1 ⇒ v1.7.0 [682c06a0] ↑ JSON v0.21.3 ⇒ v0.21.4 [ae98c720] + Jieko v0.2.1 [98e50ef6] ↑ JuliaFormatter v1.0.9 ⇒ v2.1.2 ⌅ [70703baa] + JuliaSyntax v0.4.10 [5be7bae1] + LBFGSB v0.4.1 [b964fa9f] + LaTeXStrings v1.4.0 [0e77f7df] + LazilyInitializedFields v1.3.0 [1d6d02ad] ↑ LeftChildRightSiblingTrees v0.1.3 ⇒ v0.2.0 [d3d80556] ↑ LineSearches v7.1.1 ⇒ v7.4.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.17 ⇒ v0.3.29 [aa2f6b4e] ↑ LogarithmicNumbers v1.2.1 ⇒ v1.4.1 [e6f89c97] ↑ LoggingExtras v0.4.9 ⇒ v1.1.0 [1914dd2f] ↑ MacroTools v0.5.9 ⇒ v0.5.16 [d0879d2d] + MarkdownAST v0.1.2 [e1d29d7a] ↑ Missings v1.0.2 ⇒ v1.2.0 [2e0e35c7] + Moshi v0.3.7 [d41bc354] ↑ NLSolversBase v7.8.2 ⇒ v7.10.0 [77ba4419] ↑ NaNMath v0.3.7 ⇒ v1.1.3 [429524aa] ↑ Optim v1.7.1 ⇒ v1.13.2 [7f7a1694] ↑ Optimization v3.8.2 ⇒ v4.4.0 [bca83a33] + OptimizationBase v2.8.0 [36348300] ↑ OptimizationOptimJL v0.1.2 ⇒ v0.4.3 [bac558e1] ↑ OrderedCollections v1.4.1 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.16 ⇒ v0.11.35 [69de0a69] ↑ Parsers v2.3.2 ⇒ v2.8.3 [af0b7596] ↑ PointProcesses v0.3.1 ⇒ v0.5.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] ↑ Preferences v1.3.0 ⇒ v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] ↑ ProgressLogging v0.1.4 ⇒ v0.1.5 [92933f4c] ↑ ProgressMeter v1.7.2 ⇒ v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] ↑ QuadGK v2.4.2 ⇒ v2.11.2 [3cdcf5f2] ↑ RecipesBase v1.2.1 ⇒ v1.3.4 [731186ca] ↑ RecursiveArrayTools v2.31.2 ⇒ v3.34.1 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.0 ⇒ v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [0bca4576] ↑ SciMLBase v1.47.0 ⇒ v2.103.0 [c0aeaf25] + SciMLOperators v1.3.1 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] ↑ Setfield v1.1.0 ⇒ v1.1.2 [a2af1166] ↑ SortingAlgorithms v1.0.1 ⇒ v1.2.1 [9f842d2f] + SparseConnectivityTracer v0.6.21 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] ↑ SpecialFunctions v2.1.7 ⇒ v2.5.1 [aedffcd0] ↑ Static v0.7.6 ⇒ v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] - StaticArrays v1.5.2 [1e83bf80] ↑ StaticArraysCore v1.0.1 ⇒ v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] ↑ StatsAPI v1.5.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.33.21 ⇒ v0.34.5 [4c63d2b9] ↑ StatsFuns v1.0.1 ⇒ v1.5.0 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.41 [bd369af6] ↑ Tables v1.7.0 ⇒ v1.12.1 [5d786b92] ↑ TerminalLoggers v0.1.5 ⇒ v0.1.7 [0796e94c] - Tokenize v0.5.24 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] - URIs v1.4.0 [700de1a5] - ZygoteRules v0.2.2 [2e619515] + Expat_jll v2.6.5+0 [f8c6e375] + Git_jll v2.50.0+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] - MbedTLS_jll [9bd350c2] + OpenSSH_jll v10.0.1+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.3.0+0 ⇒ v0.5.1+0 [0dad84c5] ~ ArgTools ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [f43a241f] ~ Downloads ⇒ v1.6.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] ~ LibCURL ⇒ v0.6.4 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ~ NetworkOptions ⇒ v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ~ SHA ⇒ v0.7.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] - SharedArrays [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ~ SparseArrays ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] ~ TOML ⇒ v1.0.3 [a4e569a6] ~ Tar ⇒ v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ~ CompilerSupportLibraries_jll ⇒ v1.3.0+1 [deac9b47] ~ LibCURL_jll ⇒ v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] ~ LibSSH2_jll ⇒ v1.11.3+1 [14a3606d] ~ MozillaCACerts_jll ⇒ v2025.5.20 [4536629a] ~ OpenBLAS_jll ⇒ v0.3.29+0 [05823500] ~ OpenLibm_jll ⇒ v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] ~ Zlib_jll ⇒ v1.3.1+2 [8e850b90] ~ libblastrampoline_jll ⇒ v5.13.1+0 [8e850ede] ~ nghttp2_jll ⇒ v1.64.0+1 [3f19e933] ~ p7zip_jll ⇒ v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_bEiQsB/Project.toml` [4c88cf16] Aqua v0.8.13 [b0b7db55] ComponentArrays v0.15.28 [7732c362] ControlledHiddenMarkovModels v0.1.0 [31c24e10] Distributions v0.25.120 [e30172f5] Documenter v1.14.1 [f6369f11] ForwardDiff v1.0.1 [98e50ef6] JuliaFormatter v2.1.2 [aa2f6b4e] LogarithmicNumbers v1.4.1 [7f7a1694] Optimization v4.4.0 [36348300] OptimizationOptimJL v0.4.3 [af0b7596] PointProcesses v0.5.0 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_bEiQsB/Manifest.toml` [47edcb42] ADTypes v1.15.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [d360d2e6] ChainRulesCore v1.25.2 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.17.0 [b0b7db55] ComponentArrays v0.15.28 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [7732c362] ControlledHiddenMarkovModels v0.1.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.2 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [9aa1b823] FastClosures v0.3.2 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.4.0 [c27321d9] Glob v1.3.1 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [70703baa] JuliaSyntax v0.4.10 [5be7bae1] LBFGSB v0.4.1 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.1 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [429524aa] Optim v1.13.2 [7f7a1694] Optimization v4.4.0 [bca83a33] OptimizationBase v2.8.0 [36348300] OptimizationOptimJL v0.4.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [af0b7596] PointProcesses v0.5.0 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.5 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.34.1 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [0bca4576] SciMLBase v2.103.0 [c0aeaf25] SciMLOperators v1.3.1 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [9f842d2f] SparseConnectivityTracer v0.6.21 [0a514795] SparseMatrixColorings v0.4.21 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.41 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.50.0+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") does not declare a compat entry for the following deps: 2-element Vector{Base.PkgId}: LinearAlgebra [37e2e46d-f89d-539d-b4ee-838fcccc9c8e] Random [9a3f8284-a2c9-5f02-9a11-845980a1fd5c] Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") deps: Test Failed at /home/pkgeval/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("37e2e46d-f89d-539d-b4ee-838fcccc9c8e"), "LinearAlgebra"), Base.PkgId(Base.UUID("9a3f8284-a2c9-5f02-9a11-845980a1fd5c"), "Random")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:41 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:41 Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") does not declare a compat entry for the following extras: 1-element Vector{Base.PkgId}: Test [8dfed614-e22c-5e08-85e1-65c5234f0b40] Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") extras: Test Failed at /home/pkgeval/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("8dfed614-e22c-5e08-85e1-65c5234f0b40"), "Test")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:45 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/1UuaV/src/deps_compat.jl:45 ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/eoWm2/src/utilities/utilities.jl:665 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Precompiling packages... 5368.4 ms ✓ LogarithmicNumbers → LogarithmicNumbersForwardDiffExt 1 dependency successfully precompiled in 6 seconds. 21 already precompiled. Precompiling packages... 6067.9 ms ✓ Accessors 2120.1 ms ✓ Accessors → LinearAlgebraExt 4541.2 ms ✓ SciMLOperators 5503.0 ms ✓ SymbolicIndexingInterface 1165.7 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1705.8 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 5842.1 ms ✓ RecursiveArrayTools 3528.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 29187.3 ms ✓ SciMLBase 10366.2 ms ✓ OptimizationBase 9790.6 ms ✓ Optimization 11 dependencies successfully precompiled in 81 seconds. 99 already precompiled. Precompiling packages... 1879.9 ms ✓ Accessors → TestExt 1 dependency successfully precompiled in 2 seconds. 21 already precompiled. Precompiling packages... 3233.6 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 1 dependency successfully precompiled in 4 seconds. 56 already precompiled. Precompiling packages... 3575.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1 dependency successfully precompiled in 4 seconds. 59 already precompiled. Precompiling packages... 4073.6 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 4277.4 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 2 dependencies successfully precompiled in 9 seconds. 73 already precompiled. Precompiling packages... 1952.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 22 already precompiled. Precompiling packages... 1678.5 ms ✓ OptimizationBase → OptimizationForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 101 already precompiled. Precompiling packages... 2985.2 ms ✓ Setfield 4901.4 ms ✓ NLSolversBase 7547.1 ms ✓ LineSearches 12057.9 ms ✓ Optim 35212.0 ms ✓ OptimizationOptimJL 5 dependencies successfully precompiled in 64 seconds. 145 already precompiled. Precompiling packages... 4800.0 ms ✓ PointProcesses 1 dependency successfully precompiled in 6 seconds. 58 already precompiled. Vanilla HMM: Error During Test at /home/pkgeval/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:27 Got exception outside of a @test LoadError: UndefVarError: `add_suffstats` not defined in `PointProcesses` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:47 [inlined] [2] fit_from_multiple_sequences(D::Type{MultivariatePoissonProcess{Float64}}, xs::Base.Generator{UnitRange{Int64}, ControlledHiddenMarkovModels.var"#41#42"{Vector{Vector{History{Int64, Float64}}}}}, ws::Base.Generator{UnitRange{Int64}, ControlledHiddenMarkovModels.var"#43#44"{Vector{Matrix{Float64}}, Int64}}) @ Main ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/hmm.jl:88 [3] macro expansion @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/ProgressLogging/EktJo/src/ProgressLogging.jl:470 [inlined] [5] baum_welch_multiple_sequences!(obs_densities::Vector{Matrix{Float64}}, fb_storage::ControlledHiddenMarkovModels.ForwardBackwardStorage{Float64}, obs_sequences::Vector{Vector{History{Int64, Float64}}}, hmm_init::HiddenMarkovModel{LogFloat32, LogFloat32, MultivariatePoissonProcess{Float64}}, par::Nothing; max_iterations::Int64, tol::Float64) @ ControlledHiddenMarkovModels ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:21 [6] baum_welch_multiple_sequences! @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:1 [inlined] [7] #baum_welch_multiple_sequences#45 @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:70 [inlined] [8] baum_welch_multiple_sequences @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/src/free/concrete/baum_welch.jl:64 [inlined] [9] top-level scope @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/hmm.jl:113 [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [11] top-level scope @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:18 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [13] macro expansion @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:28 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [15] macro expansion @ ~/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:28 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [17] top-level scope @ none:6 [18] eval(m::Module, e::Any) @ Core ./boot.jl:489 [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [20] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/hmm.jl:113 Test Summary: | Pass Fail Error Total Time ControlledHiddenMarkovModels.jl | 16 2 1 19 7m43.5s Code quality (Aqua.jl) | 8 2 10 1m08.1s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.4s Stale dependencies | 1 1 7.0s Compat bounds | 2 2 4 10.6s julia | 1 1 0.0s Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") deps | 1 1 10.5s Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") extras | 1 1 0.0s Base.PkgId(Base.UUID("7732c362-7152-4a8d-b9b6-d99facdeb807"), "ControlledHiddenMarkovModels") weakdeps | 1 1 0.0s Piracy | 1 1 0.1s Persistent tasks | 1 1 26.0s Formatting | 1 1 1m11.7s Doctests | 1 1 43.0s Doctests: ControlledHiddenMarkovModels | 1 1 41.4s Vanilla HMM | 4 1 5 3m47.4s Controlled HMM | 2 2 53.2s RNG of the outermost testset: Xoshiro(0xe5b440b7e70f9e1b, 0xf87fd2c9a17a7283, 0x07ded211f99114c0, 0x98346bef97c9f847, 0x1ffcc6fbd1da2755) ERROR: LoadError: Some tests did not pass: 16 passed, 2 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ControlledHiddenMarkovModels/wxm2M/test/runtests.jl:17 Testing failed after 483.04s ERROR: LoadError: Package ControlledHiddenMarkovModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 557.02s: package tests unexpectedly errored