Package evaluation of CodonMolecularEvolution on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-15T00:37:40.030


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.54s


################################################################################
# Installation
#

Installing CodonMolecularEvolution...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [6511b2a3] + CodonMolecularEvolution v0.1.0
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [80f14c24] + AbstractMCMC v5.6.3
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [4fba245c] + ArrayInterface v7.19.0
  [a9b6321e] + Atomix v1.1.1
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.7
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [6e4b80f9] + BenchmarkTools v1.6.0
  [47718e42] + BioGenerics v0.1.5
  [fa961155] + CEnum v0.5.0
  [336ed68f] + CSV v0.10.15
  [d360d2e6] + ChainRulesCore v1.25.2
  [944b1d66] + CodecZlib v0.7.8
  [6511b2a3] + CodonMolecularEvolution v0.1.0
  [34da2185] + Compat v4.17.0
  [a33af91c] + CompositionsBase v0.1.2
  [88cd18e8] + ConsoleProgressMonitor v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.5
  [cad2338a] + EllipticalSliceSampling v2.0.0
  [c2308a5c] + FASTX v2.1.7
  [7a1cc6ca] + FFTW v1.9.0
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [46192b85] + GPUArraysCore v0.2.0
  [076d061b] + HashArrayMappedTries v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [22cec73e] + InitialValues v0.3.1
  [842dd82b] + InlineStrings v1.4.4
⌅ [a98d9a8b] + Interpolations v0.15.1
  [8197267c] + IntervalSets v0.7.11
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [63c18a36] + KernelAbstractions v0.9.37
  [5ab0869b] + KernelDensity v0.6.10
  [0b1a1467] + KrylovKit v0.9.5
  [b964fa9f] + LaTeXStrings v1.4.0
  [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0
  [6fdf6af0] + LogDensityProblems v2.1.2
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
⌅ [c7f686f2] + MCMCChains v6.0.7
  [be115224] + MCMCDiagnosticTools v0.3.14
  [e80e1ace] + MLJModelInterface v1.11.1
  [1914dd2f] + MacroTools v0.5.16
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [9f975960] + MolecularEvolution v0.2.7
  [76087f3c] + NLopt v1.2.0
  [872c559c] + NNlib v0.9.30
  [c020b1a1] + NaturalSort v1.0.0
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [2412ca09] + ParameterHandling v0.5.0
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [33c8b6b6] + ProgressLogging v0.1.5
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [fdea26ae] + SIMD v3.7.1
  [30f210dd] + ScientificTypesBase v3.0.0
  [7e506255] + ScopedValues v1.3.0
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [ce78b400] + SimpleUnPack v1.1.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [64bff920] + StatisticalTraits v3.5.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.5
  [4c63d2b9] + StatsFuns v1.5.0
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.4
  [fd094767] + Suppressor v0.2.8
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [5d786b92] + TerminalLoggers v0.1.7
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28d57a85] + Transducers v0.4.84
  [013be700] + UnsafeAtomics v0.3.0
  [409d34a3] + VectorInterface v0.5.0
  [ea10d353] + WeakRefStrings v1.4.2
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
  [f5851436] + FFTW_jll v3.3.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [856f044c] + MKL_jll v2025.0.1+1
  [079eb43e] + NLopt_jll v2.10.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.5.20
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.1+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.13.1+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.36s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 228.62s


################################################################################
# Testing
#

     Testing CodonMolecularEvolution
        Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function.
    Updating `/tmp/jl_hNiJ8n/Project.toml`
  [6511b2a3] + CodonMolecularEvolution v0.1.0
  [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.7.0
  [c2308a5c] ↑ FASTX v2.1.3 ⇒ v2.1.7
  [9f975960] ↑ MolecularEvolution v0.1.0 ⇒ v0.2.7
  [8dfed614] ~ Test ⇒ v1.11.0
    Updating `/tmp/jl_hNiJ8n/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [80f14c24] + AbstractMCMC v5.6.3
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [4fba245c] + ArrayInterface v7.19.0
  [a9b6321e] + Atomix v1.1.1
  [67c07d97] ↑ Automa v1.0.0 ⇒ v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.7
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [6e4b80f9] + BenchmarkTools v1.6.0
  [47718e42] ↑ BioGenerics v0.1.2 ⇒ v0.1.5
  [fa961155] + CEnum v0.5.0
  [336ed68f] + CSV v0.10.15
  [49dc2e85] - Calculus v0.5.1
  [d360d2e6] + ChainRulesCore v1.25.2
  [944b1d66] + CodecZlib v0.7.8
  [6511b2a3] + CodonMolecularEvolution v0.1.0
  [34da2185] ↑ Compat v4.9.0 ⇒ v4.17.0
  [a33af91c] + CompositionsBase v0.1.2
  [88cd18e8] + ConsoleProgressMonitor v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [9a962f9c] ↑ DataAPI v1.15.0 ⇒ v1.16.0
  [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.7.0
  [864edb3b] ↑ DataStructures v0.18.15 ⇒ v0.18.22
  [244e2a9f] + DefineSingletons v0.1.2
  [31c24e10] ↑ Distributions v0.25.100 ⇒ v0.25.120
  [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5
  [fa6b7ba4] - DualNumbers v0.6.8
  [cad2338a] + EllipticalSliceSampling v2.0.0
  [c2308a5c] ↑ FASTX v2.1.3 ⇒ v2.1.7
  [7a1cc6ca] + FFTW v1.9.0
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] ↑ FillArrays v1.5.0 ⇒ v1.13.0
  [46192b85] + GPUArraysCore v0.2.0
  [076d061b] + HashArrayMappedTries v0.2.0
  [34004b35] ↑ HypergeometricFunctions v0.3.23 ⇒ v0.3.28
  [22cec73e] + InitialValues v0.3.1
  [842dd82b] ↑ InlineStrings v1.4.0 ⇒ v1.4.4
⌅ [a98d9a8b] + Interpolations v0.15.1
  [8197267c] + IntervalSets v0.7.11
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1
  [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4
  [c8e1da08] + IterTools v1.10.0
  [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.0
  [682c06a0] + JSON v0.21.4
  [63c18a36] + KernelAbstractions v0.9.37
  [5ab0869b] + KernelDensity v0.6.10
  [0b1a1467] + KrylovKit v0.9.5
  [b964fa9f] ↑ LaTeXStrings v1.3.1 ⇒ v1.4.0
  [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0
  [6fdf6af0] + LogDensityProblems v2.1.2
  [2ab3a3ac] ↑ LogExpFunctions v0.3.25 ⇒ v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
⌅ [c7f686f2] + MCMCChains v6.0.7
  [be115224] + MCMCDiagnosticTools v0.3.14
  [e80e1ace] + MLJModelInterface v1.11.1
  [1914dd2f] + MacroTools v0.5.16
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] ↑ Missings v1.1.0 ⇒ v1.2.0
  [9f975960] ↑ MolecularEvolution v0.1.0 ⇒ v0.2.7
  [76087f3c] + NLopt v1.2.0
  [872c559c] + NNlib v0.9.30
  [77ba4419] - NaNMath v1.0.2
  [c020b1a1] + NaturalSort v1.0.0
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] ↑ OrderedCollections v1.6.2 ⇒ v1.8.1
  [90014a1f] ↑ PDMats v0.11.17 ⇒ v0.11.35
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [2412ca09] + ParameterHandling v0.5.0
  [69de0a69] ↑ Parsers v2.8.1 ⇒ v2.8.3
  [aea7be01] ↑ PrecompileTools v1.1.2 ⇒ v1.3.2
  [21216c6a] ↑ Preferences v1.4.0 ⇒ v1.4.3
  [08abe8d2] ↑ PrettyTables v2.3.1 ⇒ v2.4.0
  [33c8b6b6] + ProgressLogging v0.1.5
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] ↑ QuadGK v2.8.2 ⇒ v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1
  [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0
  [fdea26ae] + SIMD v3.7.1
  [30f210dd] + ScientificTypesBase v3.0.0
  [7e506255] + ScopedValues v1.3.0
  [91c51154] ↑ SentinelArrays v1.4.1 ⇒ v1.4.8
  [efcf1570] + Setfield v1.1.2
  [ce78b400] + SimpleUnPack v1.1.0
  [a2af1166] ↑ SortingAlgorithms v1.1.1 ⇒ v1.2.1
  [276daf66] ↑ SpecialFunctions v2.3.1 ⇒ v2.5.1
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [64bff920] + StatisticalTraits v3.5.0
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [82ae8749] ↑ StatsAPI v1.6.0 ⇒ v1.7.1
  [2913bbd2] ↑ StatsBase v0.34.0 ⇒ v0.34.5
  [4c63d2b9] ↑ StatsFuns v1.3.0 ⇒ v1.5.0
  [892a3eda] ↑ StringManipulation v0.3.4 ⇒ v0.4.1
  [354b36f9] ↑ StringViews v1.3.3 ⇒ v1.3.4
  [fd094767] + Suppressor v0.2.8
  [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1
  [5d786b92] + TerminalLoggers v0.1.7
  [3bb67fe8] ↑ TranscodingStreams v0.9.13 ⇒ v0.11.3
  [28d57a85] + Transducers v0.4.84
  [013be700] + UnsafeAtomics v0.3.0
  [409d34a3] + VectorInterface v0.5.0
  [ea10d353] + WeakRefStrings v1.4.2
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
  [f5851436] + FFTW_jll v3.3.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [856f044c] + MKL_jll v2025.0.1+1
  [c8ffd9c3] - MbedTLS_jll v2.28.2+1
  [079eb43e] + NLopt_jll v2.10.0+0
  [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0
  [f50d1b31] ↑ Rmath_jll v0.4.0+0 ⇒ v0.5.1+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2
  [56f22d72] ~ Artifacts ⇒ v1.11.0
  [2a0f44e3] ~ Base64 ⇒ v1.11.0
  [ade2ca70] ~ Dates ⇒ v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [7b1f6079] ~ FileWatching ⇒ v1.11.0
  [9fa8497b] ~ Future ⇒ v1.11.0
  [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [76f85450] ~ LibGit2 ⇒ v1.11.0
  [8f399da3] ~ Libdl ⇒ v1.11.0
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [56ddb016] ~ Logging ⇒ v1.11.0
  [d6f4376e] ~ Markdown ⇒ v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0
  [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0
  [de0858da] ~ Printf ⇒ v1.11.0
  [9abbd945] + Profile v1.11.0
  [3fa0cd96] ~ REPL ⇒ v1.11.0
  [9a3f8284] ~ Random ⇒ v1.11.0
  [9e88b42a] ~ Serialization ⇒ v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] ~ Sockets ⇒ v1.11.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] ~ Test ⇒ v1.11.0
  [cf7118a7] ~ UUIDs ⇒ v1.11.0
  [4ec0a83e] ~ Unicode ⇒ v1.11.0
  [e66e0078] ↑ CompilerSupportLibraries_jll v1.0.5+1 ⇒ v1.3.0+1
  [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.11.1+1
  [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.0+0
  [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1
  [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.5.20
  [4536629a] ↑ OpenBLAS_jll v0.3.23+2 ⇒ v0.3.29+0
  [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.1+0
  [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.8.3+2
  [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2
  [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.13.1+0
  [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.64.0+1
  [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
        Test Successfully re-resolved
      Status `/tmp/jl_hNiJ8n/Project.toml`
  [6511b2a3] CodonMolecularEvolution v0.1.0
  [a93c6f00] DataFrames v1.7.0
  [c2308a5c] FASTX v2.1.7
  [9f975960] MolecularEvolution v0.2.7
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_hNiJ8n/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [80f14c24] AbstractMCMC v5.6.3
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
  [4fba245c] ArrayInterface v7.19.0
  [a9b6321e] Atomix v1.1.1
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.7
  [198e06fe] BangBang v0.4.4
  [9718e550] Baselet v0.1.1
  [6e4b80f9] BenchmarkTools v1.6.0
  [47718e42] BioGenerics v0.1.5
  [fa961155] CEnum v0.5.0
  [336ed68f] CSV v0.10.15
  [d360d2e6] ChainRulesCore v1.25.2
  [944b1d66] CodecZlib v0.7.8
  [6511b2a3] CodonMolecularEvolution v0.1.0
  [34da2185] Compat v4.17.0
  [a33af91c] CompositionsBase v0.1.2
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [187b0558] ConstructionBase v1.6.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.5
  [cad2338a] EllipticalSliceSampling v2.0.0
  [c2308a5c] FASTX v2.1.7
  [7a1cc6ca] FFTW v1.9.0
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [46192b85] GPUArraysCore v0.2.0
  [076d061b] HashArrayMappedTries v0.2.0
  [34004b35] HypergeometricFunctions v0.3.28
  [22cec73e] InitialValues v0.3.1
  [842dd82b] InlineStrings v1.4.4
⌅ [a98d9a8b] Interpolations v0.15.1
  [8197267c] IntervalSets v0.7.11
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [63c18a36] KernelAbstractions v0.9.37
  [5ab0869b] KernelDensity v0.6.10
  [0b1a1467] KrylovKit v0.9.5
  [b964fa9f] LaTeXStrings v1.4.0
  [1d6d02ad] LeftChildRightSiblingTrees v0.2.0
  [6fdf6af0] LogDensityProblems v2.1.2
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
⌅ [c7f686f2] MCMCChains v6.0.7
  [be115224] MCMCDiagnosticTools v0.3.14
  [e80e1ace] MLJModelInterface v1.11.1
  [1914dd2f] MacroTools v0.5.16
  [128add7d] MicroCollections v0.2.0
  [e1d29d7a] Missings v1.2.0
  [9f975960] MolecularEvolution v0.2.7
  [76087f3c] NLopt v1.2.0
  [872c559c] NNlib v0.9.30
  [c020b1a1] NaturalSort v1.0.0
  [6fe1bfb0] OffsetArrays v1.17.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [65ce6f38] PackageExtensionCompat v1.0.2
  [2412ca09] ParameterHandling v0.5.0
  [69de0a69] Parsers v2.8.3
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [33c8b6b6] ProgressLogging v0.1.5
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [fdea26ae] SIMD v3.7.1
  [30f210dd] ScientificTypesBase v3.0.0
  [7e506255] ScopedValues v1.3.0
  [91c51154] SentinelArrays v1.4.8
  [efcf1570] Setfield v1.1.2
  [ce78b400] SimpleUnPack v1.1.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [171d559e] SplittablesBase v0.1.15
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [64bff920] StatisticalTraits v3.5.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.5
  [4c63d2b9] StatsFuns v1.5.0
  [892a3eda] StringManipulation v0.4.1
  [354b36f9] StringViews v1.3.4
  [fd094767] Suppressor v0.2.8
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [5d786b92] TerminalLoggers v0.1.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [28d57a85] Transducers v0.4.84
  [013be700] UnsafeAtomics v0.3.0
  [409d34a3] VectorInterface v0.5.0
  [ea10d353] WeakRefStrings v1.4.2
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
  [f5851436] FFTW_jll v3.3.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [856f044c] MKL_jll v2025.0.1+1
  [079eb43e] NLopt_jll v2.10.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [1317d2d5] oneTBB_jll v2022.0.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.5.20
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.5.1+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary:              | Pass  Total     Time
CodonMolecularEvolution.jl |    3      3  1m57.8s
     Testing CodonMolecularEvolution tests passed 

Testing completed after 151.56s

PkgEval succeeded after 412.04s