Package evaluation of ClimaLSM on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-15T03:49:05.102 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.82s ################################################################################ # Installation # Installing ClimaLSM... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [7884a58f] + ClimaLSM v0.7.0 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.2.7 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 ⌃ [4fba245c] + ArrayInterface v7.7.1 [4c555306] + ArrayLayouts v1.11.1 [a14bc488] + ArtifactWrappers v0.2.0 [a9b6321e] + Atomix v1.1.1 ⌅ [ab4f0b2a] + BFloat16s v0.4.2 [aae01518] + BandedMatrices v1.9.4 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [fa961155] + CEnum v0.5.0 ⌅ [179af706] + CFTime v0.1.4 [336ed68f] + CSV v0.10.15 ⌅ [052768ef] + CUDA v5.1.2 ⌅ [1af6417a] + CUDA_Runtime_Discovery v0.2.4 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.25.2 ⌅ [3a4d1b5c] + ClimaComms v0.5.8 ⌅ [d414da3d] + ClimaCore v0.11.9 [d934ef94] + ClimaCoreTempestRemap v0.3.18 [7884a58f] + ClimaLSM v0.7.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [1fbeeb36] + CommonDataModel v0.3.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 ⌅ [7445602f] + CubedSphere v0.2.6 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.14 [ffbed154] + DocStringExtensions v0.9.5 [b305315f] + Elliptic v1.0.1 [4e289a0a] + EnumX v1.0.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.9.0 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [587475ba] + Flux v0.14.21 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.4.12 ⌅ [0c68f7d7] + GPUArrays v9.1.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [61eb1bfa] + GPUCompiler v0.25.0 [d54b0c1a] + GaussQuadrature v0.5.8 [88fa7841] + GilbertCurves v0.1.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.4 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.37 ⌅ [0b1a1467] + KrylovKit v0.6.1 ⌅ [929cbde3] + LLVM v6.6.3 [8b046642] + LLVMLoopInfo v1.0.0 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [c2834f40] + MLCore v1.0.0 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [85f8d34a] + NCDatasets v0.14.8 [872c559c] + NNlib v0.9.30 ⌅ [5da4648a] + NVTX v0.3.5 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [6fe1bfb0] + OffsetArrays v1.17.0 [0b1bfda6] + OneHotArrays v0.2.10 [4d8831e6] + OpenSSL v1.5.0 ⌅ [3bd65402] + Optimisers v0.3.4 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [49802e3a] + ProgressBars v1.5.1 [33c8b6b6] + ProgressLogging v0.1.5 [43287f4e] + PtrArrays v1.3.0 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 ⌃ [731186ca] + RecursiveArrayTools v3.13.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7181ea78] + RootSolvers v0.4.4 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 ⌃ [0bca4576] + SciMLBase v2.31.0 ⌅ [c0aeaf25] + SciMLOperators v0.3.12 ⌃ [53ae85a6] + SciMLStructures v1.2.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 ⌅ [aedffcd0] + Static v0.8.10 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [892a3eda] + StringManipulation v0.4.1 ⌃ [09ab397b] + StructArrays v0.6.18 ⌅ [49b00bb7] + SurfaceFluxes v0.9.1 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.11 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.17.8 ⌅ [b60c26fb] + Thermodynamics v0.11.7 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [5c2747f8] + URIs v1.6.1 [9602ed7d] + Unrolled v0.1.5 ⌅ [013be700] + UnsafeAtomics v0.2.1 ⌅ [d80eeb9a] + UnsafeAtomicsLLVM v0.1.5 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [e88e6eb3] + Zygote v0.6.77 [700de1a5] + ZygoteRules v0.2.7 ⌃ [02a925ec] + cuDNN v1.3.0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [4ee394cb] + CUDA_Driver_jll v0.7.0+1 ⌅ [76a88914] + CUDA_Runtime_jll v0.10.1+0 ⌅ [62b44479] + CUDNN_jll v8.9.7+0 [f5851436] + FFTW_jll v3.3.11+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 ⌅ [dad2f222] + LLVMExtra_jll v0.0.29+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.2.1+0 ⌅ [7243133f] + NetCDF_jll v400.902.211+1 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 ⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [8573a8c5] + TempestRemap_jll v2.2.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 20.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: JLD2 Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_y9Ev1g". Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_ahwfxV"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2178 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2186 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2456 [4] _require_prelocked @ ./loading.jl:2455 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2453 [7] require @ ./loading.jl:2451 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [17] IncludeInto @ ./Base.jl:307 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:305 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2991 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2837 [24] include_string @ ./loading.jl:2847 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:319 [26] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 864.84s ################################################################################ # Testing # Testing ClimaLSM Status `/tmp/jl_1FHZhk/Project.toml` [4c88cf16] Aqua v0.8.13 [a14bc488] ArtifactWrappers v0.2.0 [fbb218c0] BSON v0.3.9 ⌅ [6eacf6c3] CLIMAParameters v0.8.6 [336ed68f] CSV v0.10.15 ⌅ [3a4d1b5c] ClimaComms v0.5.8 ⌅ [d414da3d] ClimaCore v0.11.9 [7884a58f] ClimaLSM v0.7.0 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [587475ba] Flux v0.14.21 [cd3eb016] HTTP v1.10.17 [e98cc03f] Insolation v0.9.4 ⌅ [033835bb] JLD2 v0.4.54 [85f8d34a] NCDatasets v0.14.8 [2774e3e8] NLsolve v4.5.1 [1bc83da4] SafeTestsets v0.1.0 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 ⌅ [49b00bb7] SurfaceFluxes v0.9.1 ⌅ [b60c26fb] Thermodynamics v0.11.7 ⌃ [02a925ec] cuDNN v1.3.0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1FHZhk/Manifest.toml` ⌅ [47edcb42] ADTypes v0.2.7 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [dce04be8] ArgCheck v2.5.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [4c555306] ArrayLayouts v1.11.1 [a14bc488] ArtifactWrappers v0.2.0 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [ab4f0b2a] BFloat16s v0.4.2 [fbb218c0] BSON v0.3.9 [aae01518] BandedMatrices v1.9.4 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 ⌅ [179af706] CFTime v0.1.4 ⌅ [6eacf6c3] CLIMAParameters v0.8.6 [336ed68f] CSV v0.10.15 ⌅ [052768ef] CUDA v5.1.2 ⌅ [1af6417a] CUDA_Runtime_Discovery v0.2.4 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 ⌅ [3a4d1b5c] ClimaComms v0.5.8 ⌅ [d414da3d] ClimaCore v0.11.9 [d934ef94] ClimaCoreTempestRemap v0.3.18 [7884a58f] ClimaLSM v0.7.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [1fbeeb36] CommonDataModel v0.3.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities 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LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 13580.0 ms ? GPUCompiler 13832.3 ms ? CUDA 14808.5 ms ? Atomix → AtomixCUDAExt 22012.9 ms ? MPI → CUDAExt Info Given ClimaComms was explicitly requested, output will be shown live  ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 14975.9 ms ? ClimaComms ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 11825.8 ms ? GPUCompiler Info Given CUDA was explicitly requested, output will be shown live  ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 13074.9 ms ? CUDA 15188.2 ms ? Atomix → AtomixCUDAExt ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... Info Given GPUCompiler was explicitly requested, output will be shown live  ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 12644.0 ms ? GPUCompiler ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:35. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. ┌ Error: LLVM extensions library unavailable for your platform: │ x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.12.0 │ LLVM.jl will not be functional. │ │ If you are using a custom version of LLVM, try building a │ custom version of LLVMExtra_jll using `deps/build_local.jl` └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103 WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import. NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MethodError end`. Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` in the method signature or explicitly `import Base: MethodError`. WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:35. ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:47 [2] top-level scope @ ~/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:308 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [4] top-level scope @ ~/.julia/packages/GPUCompiler/U36Ed/src/GPUCompiler.jl:35 [5] include(mod::Module, _path::String) @ Base ./Base.jl:305 [6] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2686 [7] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [8] macro expansion @ ./loading.jl:2389 [inlined] [9] macro expansion @ ./lock.jl:376 [inlined] [10] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [11] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [12] top-level scope @ ~/.julia/packages/CUDA/rXson/src/CUDA.jl:3 [13] include(mod::Module, _path::String) @ Base ./Base.jl:305 [14] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2686 [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [16] macro expansion @ ./loading.jl:2389 [inlined] [17] macro expansion @ ./lock.jl:376 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [21] top-level scope @ ~/.julia/packages/ClimaComms/MM6De/src/ClimaComms.jl:14 [22] include(mod::Module, _path::String) @ Base ./Base.jl:305 [23] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2686 [24] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2461 [25] macro expansion @ ./loading.jl:2389 [inlined] [26] macro expansion @ ./lock.jl:376 [inlined] [27] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2354 [28] require(into::Module, mod::Symbol) @ Base ./loading.jl:2330 [29] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [30] top-level scope @ none:6 [31] eval(m::Module, e::Any) @ Core ./boot.jl:489 [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [33] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/jlgen.jl:308 in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/U36Ed/src/GPUCompiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/CUDA/rXson/src/CUDA.jl:1 in expression starting at /home/pkgeval/.julia/packages/ClimaComms/MM6De/src/devices.jl:2 in expression starting at /home/pkgeval/.julia/packages/ClimaComms/MM6De/src/ClimaComms.jl:1 in expression starting at /home/pkgeval/.julia/packages/ClimaLSM/3ezTK/test/runtests.jl:3 Testing failed after 253.57s ERROR: LoadError: Package ClimaLSM errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2458 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2313 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:511 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1174.21s: illegal method overwrites during precompilation