Package evaluation of AnovaGLM on Julia 1.12.0-rc1.2 (995ff9db19*) started at 2025-07-14T16:11:22.308 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.89s ################################################################################ # Installation # Installing AnovaGLM... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [0a47a8e3] + AnovaGLM v0.2.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [946dddda] + AnovaBase v0.8.0 [0a47a8e3] + AnovaGLM v0.2.4 [34da2185] + Compat v4.17.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 4.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 45.33s ################################################################################ # Testing # Testing AnovaGLM Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_ScKlMp/Project.toml` [0a47a8e3] + AnovaGLM v0.2.4 [336ed68f] ↑ CSV v0.10.4 ⇒ v0.10.15 [324d7699] ↑ CategoricalArrays v0.10.6 ⇒ v0.10.8 [a93c6f00] ↑ DataFrames v1.3.4 ⇒ v1.7.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_ScKlMp/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [946dddda] + AnovaBase v0.8.0 [0a47a8e3] + AnovaGLM v0.2.4 [336ed68f] ↑ CSV v0.10.4 ⇒ v0.10.15 [324d7699] ↑ CategoricalArrays v0.10.6 ⇒ v0.10.8 [944b1d66] ↑ CodecZlib v0.7.0 ⇒ v0.7.8 [34da2185] ↑ Compat v3.45.0 ⇒ v4.17.0 [9a962f9c] ↑ DataAPI v1.10.0 ⇒ v1.16.0 [a93c6f00] ↑ DataFrames v1.3.4 ⇒ v1.7.0 [864edb3b] ↑ DataStructures v0.18.13 ⇒ v0.18.22 [8bb1440f] - DelimitedFiles [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] ↑ ExprTools v0.1.8 ⇒ v0.1.10 [5789e2e9] ↑ FileIO v1.14.0 ⇒ v1.17.0 [48062228] ↑ FilePathsBase v0.9.18 ⇒ v0.9.24 [1a297f60] + FillArrays v1.13.0 [59287772] - Formatting v0.4.2 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] ↑ InlineStrings v1.1.4 ⇒ v1.4.4 [41ab1584] ↑ InvertedIndices v1.1.0 ⇒ v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] ↑ Missings v1.0.2 ⇒ v1.2.0 [78c3b35d] ↑ Mocking v0.7.3 ⇒ v0.8.1 [bac558e1] ↑ OrderedCollections v1.4.1 ⇒ v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] ↑ Parsers v2.3.2 ⇒ v2.8.3 [2dfb63ee] ↑ PooledArrays v1.4.2 ⇒ v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] ↑ PrettyTables v1.3.1 ⇒ v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] - RecipesBase v1.2.1 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] ↑ Scratch v1.1.1 ⇒ v1.3.0 [91c51154] ↑ SentinelArrays v1.3.13 ⇒ v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] ↑ SortingAlgorithms v1.0.1 ⇒ v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [dc5dba14] + TZJData v1.5.0+2025b [bd369af6] ↑ Tables v1.7.0 ⇒ v1.12.1 [f269a46b] ↑ TimeZones v1.9.0 ⇒ v1.21.3 [3bb67fe8] ↑ TranscodingStreams v0.9.6 ⇒ v0.11.3 [76eceee3] + WorkerUtilities v1.6.1 [c8ffd9c3] - MbedTLS_jll [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] ~ ArgTools ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] - Distributed [f43a241f] ~ Downloads ⇒ v1.6.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] - LazyArtifacts [b27032c2] ~ LibCURL ⇒ v0.6.4 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ~ NetworkOptions ⇒ v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ~ SHA ⇒ v0.7.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] - SharedArrays [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ~ SparseArrays ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] ~ TOML ⇒ v1.0.3 [a4e569a6] ~ Tar ⇒ v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ~ CompilerSupportLibraries_jll ⇒ v1.3.0+1 [deac9b47] ~ LibCURL_jll ⇒ v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] ~ LibSSH2_jll ⇒ v1.11.3+1 [14a3606d] ~ MozillaCACerts_jll ⇒ v2025.5.20 [4536629a] ~ OpenBLAS_jll ⇒ v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] ~ Zlib_jll ⇒ v1.3.1+2 [8e850b90] ~ libblastrampoline_jll ⇒ v5.13.1+0 [8e850ede] ~ nghttp2_jll ⇒ v1.64.0+1 [3f19e933] ~ p7zip_jll ⇒ v17.5.0+2 Test Successfully re-resolved Status `/tmp/jl_ScKlMp/Project.toml` [0a47a8e3] AnovaGLM v0.2.4 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.0 [ce6b1742] RDatasets v0.7.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_ScKlMp/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [946dddda] AnovaBase v0.8.0 [0a47a8e3] AnovaGLM v0.2.4 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.17.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.21.3 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 26716.9 ms ✓ RData 19643.1 ms ✓ RDatasets 2 dependencies successfully precompiled in 47 seconds. 70 already precompiled. ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/anova.jl:162 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/vM20T/src/lm.jl:185 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/vM20T/src/lm.jl:185 ┌ Warning: Empty model is not allowed due to `CholeskyPivoted` └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:236 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/anova.jl:162 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: Empty model is not allowed due to `CholeskyPivoted` └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:251 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: Empty model is not allowed due to `CholeskyPivoted` └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:251 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/anova.jl:174 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 Test Summary: | Pass Total Time AnovaGLM.jl | 59 59 4m03.9s Testing AnovaGLM tests passed Testing completed after 427.66s PkgEval succeeded after 496.66s