Package evaluation of RegressionDynamicCausalModeling on Julia 1.12.0-beta1.26 (980347dc86*) started at 2025-04-16T15:31:47.197 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.39s ################################################################################ # Installation # Installing RegressionDynamicCausalModeling... Resolving package versions... Installed RegressionDynamicCausalModeling ─ v0.1.4 Updating `~/.julia/environments/v1.12/Project.toml` [4fb452e6] + RegressionDynamicCausalModeling v0.1.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [66dad0bd] + AliasTables v1.1.3 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [7a1cc6ca] + FFTW v1.8.1 [1a297f60] + FillArrays v1.13.0 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [4fb452e6] + RegressionDynamicCausalModeling v0.1.4 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [3bb67fe8] + TranscodingStreams v0.11.3 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Building RegressionDynamicCausalModeling → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/cfcaa1acb988d8e175767e4665e32042b1998f2d/build.log` Installation completed after 17.71s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 159.47s ################################################################################ # Testing # Testing RegressionDynamicCausalModeling Status `/tmp/jl_uuypTm/Project.toml` [4c88cf16] Aqua v0.8.11 [c3a54625] JET v0.10.2 [98e50ef6] JuliaFormatter v2.1.1 [23992714] MAT v0.10.7 [4fb452e6] RegressionDynamicCausalModeling v0.1.4 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_uuypTm/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [e1450e63] BufferedStreams v1.2.2 [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.0 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [7a1cc6ca] FFTW v1.8.1 [1a297f60] FillArrays v1.13.0 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.4 [c3a54625] JET v0.10.2 [692b3bcd] JLLWrappers v1.7.0 [98e50ef6] JuliaFormatter v2.1.1 [aa1ae85d] JuliaInterpreter v0.9.44 ⌅ [70703baa] JuliaSyntax v0.4.10 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [4fb452e6] RegressionDynamicCausalModeling v0.1.4 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.2.1 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [3bb67fe8] TranscodingStreams v0.11.3 [f5851436] FFTW_jll v3.3.11+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.7+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 15206.6 ms ✓ CommonMark 61411.3 ms ✓ JuliaFormatter 2 dependencies successfully precompiled in 77 seconds. 9 already precompiled. Precompiling packages... 1601.7 ms ✓ MPIPreferences 1315.5 ms ✓ MicrosoftMPI_jll 1472.5 ms ✓ Hwloc_jll 1493.2 ms ✓ libaec_jll 6644.7 ms ✓ MPItrampoline_jll 6620.4 ms ✓ OpenMPI_jll 7301.8 ms ✓ MPICH_jll 8073.2 ms ✓ HDF5_jll 18074.7 ms ✓ HDF5 10623.5 ms ✓ MAT 10 dependencies successfully precompiled in 64 seconds. 39 already precompiled. Precompiling packages... 4977.3 ms ✓ Rmath_jll 1522.8 ms ✓ oneTBB_jll 1514.2 ms ✓ FFTW_jll 7190.0 ms ✓ IntelOpenMP_jll 2786.5 ms ✓ HypergeometricFunctions 1981.4 ms ✓ Rmath 7400.0 ms ✓ MKL_jll 3477.9 ms ✓ StatsFuns 7674.6 ms ✓ FFTW 29026.6 ms ✓ Distributions 69014.3 ms ✓ RegressionDynamicCausalModeling 11 dependencies successfully precompiled in 137 seconds. 80 already precompiled. Precompiling packages... 4830.6 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 5 seconds. 50 already precompiled. Code formatting: Test Failed at /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/runtests.jl:13 Expression: JuliaFormatter.format(RegressionDynamicCausalModeling; verbose = false, overwrite = false) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] [2] macro expansion @ ~/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/runtests.jl:13 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [4] macro expansion @ ~/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/runtests.jl:13 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [6] top-level scope @ ~/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/runtests.jl:12 Code linting: JET-test failed at /home/pkgeval/.julia/packages/JET/Homj1/src/JETBase.jl:1047 Expression: (JET.report_package)(RegressionDynamicCausalModeling; toplevel_logger = nothing, target_defined_modules = true) ═════ 13 toplevel errors found ═════ ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:49 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/structs.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:50 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/create_regressors.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:51 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/load_DCM.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:52 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/dcm_euler_integration.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:53 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/dcm_print.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:54 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/SPM_compat.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:55 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/generate_BOLD.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:56 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/get_priors.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:57 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/rigid_inversion.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:58 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/invert_rDCM.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:59 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/predict.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:60 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/sparse_inversion.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:61 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/precompile.jl": No such file or directory └─────────────────────── Test Summary: | Pass Fail Total Time rDCM tests | 275 2 277 9m24.8s Code formatting | 1 1 26.9s Code linting | 1 1 1m23.5s Code quality | 9 9 1m16.3s Utils | 54 54 1m07.9s save/load DCM | 21 21 18.9s pretty print | 16 16 17.9s SPM compatibility | 17 17 9.0s Constructors | 141 141 1.8s Create HRF | 4 4 0.0s Generate synthetic data | 15 15 1m02.5s linear | 2 2 15.1s special cases | 4 4 30.3s bilinear | 2 2 7.6s nonlinear | 2 2 8.2s Priors | 25 25 7.1s Prior param | 10 10 0.0s Sample prior | 9 9 0.0s Rigid prior | 6 6 2.7s Create regressors | 3 3 1.6s Model inversion | 21 21 14.0s rigid rDCM | 7 7 1.5s sparse rDCM (fix C matrix) | 6 6 3.8s sparse rDCM (prune C matrix) | 6 6 5.0s Prediction | 3 3 18.7s rigid rDCM | 1 1 6.7s sparse rDCM | 1 1 10.9s error handling | 1 1 0.2s RNG of the outermost testset: Xoshiro(0x0a6e6d4c10a29e9e, 0x54ee41c3b25d7152, 0x55308494010d3caf, 0x8c807a186f6bec02, 0x8aaf202638f0960d) ERROR: LoadError: Some tests did not pass: 275 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/runtests.jl:11 Testing failed after 926.69s ERROR: LoadError: Package RegressionDynamicCausalModeling errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1139.45s: package has test failures