Package evaluation of SequenceVariation on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T12:47:17.251


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.19s


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# Installation
#

Installing SequenceVariation...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [eef6e190] + SequenceVariation v0.2.2
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [00701ae9] + BioAlignments v3.1.0
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.4.1
  [3c28c6f8] + BioSymbols v5.2.0
  [524e6230] + IntervalTrees v1.1.0
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [eef6e190] + SequenceVariation v0.2.2
  [3bb67fe8] + TranscodingStreams v0.11.3
  [7200193e] + Twiddle v1.1.2
  [56f22d72] + Artifacts
  [ade2ca70] + Dates
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [de0858da] + Printf
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.08s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 14.75s


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# Testing
#

     Testing SequenceVariation
      Status `/tmp/jl_UydvS0/Project.toml`
⌅ [4c88cf16] Aqua v0.6.7
  [00701ae9] BioAlignments v3.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.4.1
  [3c28c6f8] BioSymbols v5.2.0
  [eef6e190] SequenceVariation v0.2.2
  [8dfed614] Test
      Status `/tmp/jl_UydvS0/Manifest.toml`
⌅ [4c88cf16] Aqua v0.6.7
  [00701ae9] BioAlignments v3.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.4.1
  [3c28c6f8] BioSymbols v5.2.0
  [34da2185] Compat v4.16.0
  [524e6230] IntervalTrees v1.1.0
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [eef6e190] SequenceVariation v0.2.2
  [3bb67fe8] TranscodingStreams v0.11.3
  [7200193e] Twiddle v1.1.2
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+4
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary: | Pass  Total  Time
EditSorting   |    2      2  1.4s
Test Summary:       | Pass  Total  Time
HaplotypeValidation |   11     11  0.6s
Test Summary:      | Pass  Total  Time
HaplotypeRoundtrip |    8      8  0.3s
Test Summary:           | Pass  Total  Time
HaplotypeReconstruction |    1      1  0.4s
Test Summary:    | Pass  Total  Time
VariationSorting |    1      1  0.0s
Test Summary:        | Pass  Total  Time
HaplotypeTranslation |    1      1  0.4s
Test Summary:     | Pass  Total  Time
VariationPosition |    1      1  0.3s
Test Summary:    | Pass  Total  Time
VariationParsing |    3      3  0.0s
Test Summary:      | Pass  Total  Time
VariationRetrieval |    1      1  0.0s
Test Summary:        | Pass  Total  Time
VariationTranslation |   10     10  0.0s
Test Summary:  | Pass  Total  Time
VariationBases |   14     14  0.3s
Test Summary:     | Pass  Total  Time
SoftclipHaplotype |    4      4  0.0s
Test Summary: | Pass  Total   Time
Aqua          |    8      8  13.2s
     Testing SequenceVariation tests passed 

Testing completed after 27.88s

PkgEval succeeded after 57.67s