Package evaluation of SMLMSim on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T18:02:55.451 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.03s ################################################################################ # Installation # Installing SMLMSim... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [5a0a87e4] + SMLMSim v0.3.3 Updating `~/.julia/environments/v1.10/Manifest.toml` ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [e1450e63] + BufferedStreams v1.2.2 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [a98d9a8b] + Interpolations v0.14.7 [92d709cd] + IrrationalConstants v0.2.4 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [de9ac726] + MicroscopePSFs v0.5.1 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [5488f106] + SMLMData v0.3.1 [5a0a87e4] + SMLMSim v0.3.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+2 [458c3c95] + OpenSSL_jll v3.5.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.9/activate_set.jl:63 ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ Unsatisfiable requirements detected for package Statistics [10745b16]: │ Statistics [10745b16] log: │ ├─possible versions are: 1.10.0 or uninstalled │ └─restricted to versions 1.11.1-1 by project [5256be0f] — no versions left │ └─project [5256be0f] log: │ ├─possible versions are: 0.0.0 or uninstalled │ └─project [5256be0f] is fixed to version 0.0.0 │ Stacktrace: │ [1] check_constraints(graph::Pkg.Resolve.Graph) │ @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Resolve/graphtype.jl:998 │ [2] Pkg.Resolve.Graph(compat::Dict{UUID, Dict{VersionNumber, Dict{UUID, Pkg.Versions.VersionSpec}}}, compat_weak::Dict{UUID, Dict{VersionNumber, Set{UUID}}}, uuid_to_name::Dict{UUID, String}, reqs::Dict{UUID, Pkg.Versions.VersionSpec}, fixed::Dict{UUID, Pkg.Resolve.Fixed}, verbose::Bool, julia_version::VersionNumber) │ @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Resolve/graphtype.jl:345 │ [3] deps_graph(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, uuid_to_name::Dict{UUID, String}, reqs::Dict{UUID, Pkg.Versions.VersionSpec}, fixed::Dict{UUID, Pkg.Resolve.Fixed}, julia_version::VersionNumber, installed_only::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:600 │ [4] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber, installed_only::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:413 │ [5] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1553 │ [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) │ @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:351 │ [7] up │ @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:326 [inlined] │ [8] up │ @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:164 [inlined] │ [9] #resolve#143 │ @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:357 [inlined] │ [10] resolve │ @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:356 [inlined] │ [11] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.9/activate_set.jl:68 │ [12] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.9/activate_set.jl:9 │ [13] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [14] include(mod::Module, _path::String) │ @ Base ./Base.jl:495 │ [15] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:323 │ [16] _start() │ @ Base ./client.jl:557 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 15604.7 ms ✓ SMLMSim 1 dependency successfully precompiled in 18 seconds. 79 already precompiled. 1 dependency had output during precompilation: ┌ SMLMSim │ ┌ Warning: Replacing docs for `MicroscopePSFs.ScalarPSF :: Tuple{Real, Real, Real}` in module `MicroscopePSFs` │ └ @ Base.Docs docs/Docs.jl:243 └ Precompilation completed after 35.89s ################################################################################ # Testing # Testing SMLMSim ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Testing failed after 7.65s ERROR: LoadError: Unsatisfiable requirements detected for package Statistics [10745b16]: Statistics [10745b16] log: ├─possible versions are: 1.10.0 or uninstalled └─restricted to versions 1.11.1-1 by project [805850c5] — no versions left └─project [805850c5] log: ├─possible versions are: 0.0.0 or uninstalled └─project [805850c5] is fixed to version 0.0.0 Stacktrace: [1] check_constraints(graph::Pkg.Resolve.Graph) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Resolve/graphtype.jl:998 [2] Pkg.Resolve.Graph(compat::Dict{UUID, Dict{VersionNumber, Dict{UUID, Pkg.Versions.VersionSpec}}}, compat_weak::Dict{UUID, Dict{VersionNumber, Set{UUID}}}, uuid_to_name::Dict{UUID, String}, reqs::Dict{UUID, Pkg.Versions.VersionSpec}, fixed::Dict{UUID, Pkg.Resolve.Fixed}, verbose::Bool, julia_version::VersionNumber) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Resolve/graphtype.jl:345 [3] deps_graph(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, uuid_to_name::Dict{UUID, String}, reqs::Dict{UUID, Pkg.Versions.VersionSpec}, fixed::Dict{UUID, Pkg.Resolve.Fixed}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:600 [4] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:413 [5] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1553 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:351 [7] up @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:326 [inlined] [8] up @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:164 [inlined] [9] #resolve#143 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:357 [inlined] [10] resolve @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:356 [inlined] [11] (::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1831 [12] with_temp_env(fn::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 [13] (::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Nothing, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 [14] mktempdir(fn::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Nothing, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:766 [15] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:762 [16] mktempdir @ ./file.jl:762 [inlined] [17] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Nothing; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 [18] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 [19] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [20] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [21] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [22] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [23] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [24] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 caused by: empty intersection between Statistics@1.10.0 and project compatibility 1.11.1-1 Stacktrace: [1] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:396 [2] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1553 [3] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:351 [4] up @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:326 [inlined] [5] up @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:164 [inlined] [6] #resolve#143 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:357 [inlined] [7] resolve @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:356 [inlined] [8] (::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1823 [9] with_temp_env(fn::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 [10] (::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Nothing, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 [11] mktempdir(fn::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#130#134"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Nothing, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:766 [12] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:762 [13] mktempdir @ ./file.jl:762 [inlined] [14] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Nothing; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 [15] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 [16] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [17] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [18] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [19] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [20] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [21] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 PkgEval failed after 71.08s: there were unidentified errors