Package evaluation of SBMLToolkit on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-07T00:20:12.454 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 3.84s ################################################################################ # Installation # Installing SBMLToolkit... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [86080e66] + SBMLToolkit v0.1.31 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 ⌅ [e2ed5e7c] + Bijections v0.1.10 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.6.3 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.6 [479239e8] + Catalyst v15.0.8 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [861a8166] + Combinatorics v1.0.3 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.175.0 [459566f4] + DiffEqCallbacks v4.6.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [8d63f2c5] + DispatchDoctor v0.4.19 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.11 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.2 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.2 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.2 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.15.0 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.8 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.3.0 [7ed4a6bd] + LinearSolve v3.17.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.80.4 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.9.0 [be0214bd] + NonlinearSolveBase v1.12.0 [5959db7a] + NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.6.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [e5567a89] + SBML v1.6.0 [86080e66] + SBMLToolkit v0.1.31 [9dfe8606] + SCCNonlinearSolve v1.2.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.97.0 [19f34311] + SciMLJacobianOperators v0.1.6 [c0aeaf25] + SciMLOperators v1.3.1 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.5.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [0a514795] + SparseMatrixColorings v0.4.20 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.40 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.29.0 [0c5d862f] + Symbolics v6.40.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.2 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.4 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.5.2 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.1 [a7c27f48] + Unityper v0.1.6 [897b6980] + WeakValueDicts v0.1.0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.33s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 936.25s ################################################################################ # Testing # Testing SBMLToolkit Status `/tmp/jl_GoDuuP/Project.toml` [4c88cf16] Aqua v0.8.13 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [a93c6f00] DataFrames v1.7.0 ⌅ [961ee093] ModelingToolkit v9.80.4 [1dea7af3] OrdinaryDiffEq v6.98.0 [91a5bcdd] Plots v1.40.13 [e5567a89] SBML v1.6.0 [86080e66] SBMLToolkit v0.1.31 ⌅ [792e603a] SBMLToolkitTestSuite v0.0.4 [1bc83da4] SafeTestsets v0.1.0 [c3572dad] Sundials v4.28.0 [d1185830] SymbolicUtils v3.29.0 [f43a241f] Downloads v1.6.0 [8dfed614] Test Status `/tmp/jl_GoDuuP/Manifest.toml` [47edcb42] ADTypes v1.14.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 ⌅ [e2ed5e7c] Bijections v0.1.10 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.6.3 [70df07ce] BracketingNonlinearSolve v1.3.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.175.0 [459566f4] DiffEqCallbacks v4.6.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [8d63f2c5] DispatchDoctor v0.4.19 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [5b8099bc] DomainSets v0.7.15 [7c1d4256] DynamicPolynomials v0.6.2 [06fc5a27] DynamicQuantities v1.8.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.11 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.2 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.2 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [64ca27bc] FindFirstFunctions v1.4.1 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.16 [c145ed77] GenericSchur v0.5.5 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.0 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.16 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [18e54dd8] IntegerMathUtils v0.1.2 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [70703baa] JuliaSyntax v0.4.10 [ccbc3e58] JumpProcesses v9.15.0 [ba0b0d4f] Krylov v0.10.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.8 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.1 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v3.17.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 ⌅ [961ee093] ModelingToolkit v9.80.4 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.9.0 [be0214bd] NonlinearSolveBase v1.12.0 [5959db7a] NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.6.0 [26075421] NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.98.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.5.1 [bbf590c4] OrdinaryDiffEqCore v1.26.0 [50262376] OrdinaryDiffEqDefault v1.4.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.9.1 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.4.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] OrdinaryDiffEqFIRK v1.12.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.3.0 [521117fe] OrdinaryDiffEqLinear v1.3.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.10.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.1 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.10.1 [2d112036] OrdinaryDiffEqSDIRK 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[05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [e5567a89] SBML v1.6.0 [86080e66] SBMLToolkit v0.1.31 ⌅ [792e603a] SBMLToolkitTestSuite v0.0.4 [9dfe8606] SCCNonlinearSolve v1.2.0 [94e857df] SIMDTypes v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.97.0 [19f34311] SciMLJacobianOperators v0.1.6 [c0aeaf25] SciMLOperators v1.3.1 [53ae85a6] SciMLStructures v1.7.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [992d4aef] Showoff v1.0.3 [777ac1f9] SimpleBufferStream v1.2.0 [727e6d20] SimpleNonlinearSolve v2.5.0 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [0a514795] SparseMatrixColorings v0.4.20 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] 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OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: both Symbolics and ModelingToolkit export "infimum"; uses of it in module Catalyst must be qualified WARNING: both Symbolics and ModelingToolkit export "supremum"; uses of it in module Catalyst must be qualified WARNING: both Symbolics and ModelingToolkit export "infimum"; uses of it in module Catalyst must be qualified WARNING: both Symbolics and ModelingToolkit export "supremum"; uses of it in module Catalyst must be qualified ┌ Warning: `istree` is deprecated, use `iscall` instead. │ caller = (::SBMLToolkit.var"#check_args#18")(x::SymbolicUtils.BasicSymbolic{Real}) at reactions.jl:166 └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:166 ┌ Warning: Cannot separate bidirectional kineticLaw `k1 - s1s2(t) - k1*s2(t)` to forward and reverse part. Setting forward to `k1 - s1s2(t) - k1*s2(t)` and reverse to `0`. Stochastic simulations will be inexact. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:49 ┌ Warning: Cannot separate bidirectional kineticLaw `k1` to forward and reverse part. Setting forward to `k1` and reverse to `0`. Stochastic simulations will be inexact. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:35 Rules: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: An equation (0.5 ~ Differential(t)(k1(t))) contains a differential with respect to a species. This is currently not supported. If this is a functionality you require, please raise an issue on the Catalyst GitHub page and we can consider the best way to implement it. Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] Catalyst.ReactionSystem(eqs::Vector{Union{Symbolics.Equation, Catalyst.Reaction}}, rxs::Vector{Catalyst.Reaction}, iv::SymbolicUtils.BasicSymbolic{Real}, sivs::Vector{SymbolicUtils.BasicSymbolic{Real}}, unknowns::Vector{SymbolicUtils.BasicSymbolic{Real}}, spcs::Vector{SymbolicUtils.BasicSymbolic{Real}}, ps::Vector{SymbolicUtils.BasicSymbolic{Real}}, var_to_name::Dict{Any, Any}, observed::Vector{Symbolics.Equation}, name::Symbol, systems::Vector{Any}, defaults::Dict{Any, Any}, connection_type::Nothing, nps::Catalyst.NetworkProperties{Int64, SymbolicUtils.BasicSymbolic{Real}}, cls::Bool, cevs::Vector{ModelingToolkit.SymbolicContinuousCallback}, devs::Vector{ModelingToolkit.SymbolicDiscreteCallback}, metadata::Nothing, complete::Bool, parent::Nothing; checks::Bool) @ Catalyst ~/.julia/packages/Catalyst/8qDWw/src/reactionsystem.jl:373 [3] ReactionSystem @ ~/.julia/packages/Catalyst/8qDWw/src/reactionsystem.jl:341 [inlined] [4] Catalyst.ReactionSystem(eqs::Vector{Any}, iv::Symbolics.Num, unknowns::Vector{SymbolicUtils.BasicSymbolic{Real}}, ps::Vector{SymbolicUtils.BasicSymbolic{Real}}; observed::Vector{Symbolics.Equation}, systems::Vector{Any}, name::Symbol, default_u0::Dict{Any, Any}, default_p::Dict{Any, Any}, defaults::Dict{Symbolics.Num, Any}, connection_type::Nothing, checks::Bool, networkproperties::Nothing, combinatoric_ratelaws::Bool, balanced_bc_check::Bool, spatial_ivs::Nothing, continuous_events::Nothing, discrete_events::Nothing, metadata::Nothing) @ Catalyst ~/.julia/packages/Catalyst/8qDWw/src/reactionsystem.jl:487 [5] Catalyst.ReactionSystem(model::SBML.Model; kwargs::@Kwargs{name::Symbol}) @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/systems.jl:103 [6] ReactionSystem @ ~/.julia/packages/SBMLToolkit/7Hd7h/src/systems.jl:54 [inlined] [7] ModelingToolkit.ODESystem(model::SBML.Model; include_zero_odes::Bool, kwargs::@Kwargs{name::Symbol}) @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/systems.jl:121 [8] top-level scope @ ~/.julia/packages/ModelingToolkit/bjlz4/src/systems/abstractsystem.jl:2297 [9] include(mod::Module, _path::String) @ Base ./Base.jl:495 [10] include(x::String) @ Main.var"##SBMLToolkit.jl#225".var"##Rules#229" ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [11] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:14 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [13] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:14 [inlined] [14] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 [15] eval(m::Module, e::Any) @ Core ./boot.jl:385 [16] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] [17] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:13 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [19] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:4 [inlined] [20] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 [21] eval(m::Module, e::Any) @ Core ./boot.jl:385 [22] top-level scope @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:28 [23] include(fname::String) @ Base.MainInclude ./client.jl:494 [24] top-level scope @ none:6 [25] eval @ ./boot.jl:385 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [27] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/SBMLToolkit/7Hd7h/test/rules.jl:65 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: `convert_simplify_math` is deprecated, use `convert_promotelocals_expandfuns` instead. │ caller = #16 at SBMLToolkitTestSuite.jl:104 [inlined] └ @ Core ~/.julia/packages/SBMLToolkitTestSuite/QDNw7/src/SBMLToolkitTestSuite.jl:104 [ Info: Case 00007 done with a code 6 and error msg: [ Info: ("00007", false, true, "", 6, SciMLBase.ReturnCode.Success) [ Info: Case 00022 done with a code 6 and error msg: [ Info: ("00022", false, true, "", 6, SciMLBase.ReturnCode.Success) [ Info: Case 00023 done with a code 6 and error msg: [ Info: ("00023", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 [ Info: Case 00041 done with a code 6 and error msg: [ Info: ("00041", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: Initialization system is overdetermined. 1 equations for 0 unknowns. Initialization will default to using least squares. `SCCNonlinearProblem` can only be used for initialization of fully determined systems and hence will not be used here. To suppress this warning pass warn_initialize_determined = false. To make this warning into an error, pass fully_determined = true └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/bjlz4/src/systems/diffeqs/abstractodesystem.jl:1522 [ Info: Case 00140 done with a code 6 and error msg: [ Info: ("00140", false, true, "", 6, SciMLBase.ReturnCode.Success) [ Info: Case 00170 done with a code 1 and error msg: ErrorException("An equation (S2*k2 - k1*S1(t) ~ Differential(t)(S1(t))) contains a differential with respect to a species. This is currently not supported. If this is a functionality you require, please raise an issue on the Catalyst GitHub page and we can consider the best way to implement it.") [ Info: ("00170", false, false, "ErrorException(\"An equation (S2*k2 - k1*S1(t) ~ Differential(t)(S1(t))) contains a differential with respect to a species. This is currently not supported. If this is a functionality you require, please raise an issue on the Catalyst GitHub page and we can consider the best way to implement it.\")", 1, :nothing) [ Info: Case 00325 done with a code 1 and error msg: ErrorException("An equation (0.5compartment*k1 ~ Differential(t)(S3(t))) contains a differential with respect to a species. This is currently not supported. If this is a functionality you require, please raise an issue on the Catalyst GitHub page and we can consider the best way to implement it.") [ Info: ("00325", false, false, "ErrorException(\"An equation (0.5compartment*k1 ~ Differential(t)(S3(t))) contains a differential with respect to a species. This is currently not supported. If this is a functionality you require, please raise an issue on the Catalyst GitHub page and we can consider the best way to implement it.\")", 1, :nothing) ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: Initialization system is overdetermined. 1 equations for 0 unknowns. Initialization will default to using least squares. `SCCNonlinearProblem` can only be used for initialization of fully determined systems and hence will not be used here. To suppress this warning pass warn_initialize_determined = false. To make this warning into an error, pass fully_determined = true └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/bjlz4/src/systems/diffeqs/abstractodesystem.jl:1522 [ Info: Case 00679 done with a code 6 and error msg: [ Info: ("00679", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 [ Info: Case 00944 done with a code 6 and error msg: [ Info: ("00944", false, true, "", 6, SciMLBase.ReturnCode.Success) 9×6 DataFrame Row │ case expected_err res error k diffeq_retcode │ String Bool Bool String Int64 Any ─────┼─────────────────────────────────────────────────────────────────────────────────────── 1 │ 00007 false true 6 Success 2 │ 00022 false true 6 Success 3 │ 00023 false true 6 Success 4 │ 00041 false true 6 Success 5 │ 00140 false true 6 Success 6 │ 00170 false false ErrorException("An equation (S2*… 1 nothing 7 │ 00325 false false ErrorException("An equation (0.5… 1 nothing 8 │ 00679 false true 6 Success 9 │ 00944 false true 6 SuccessSimulation results: Test Failed at /home/pkgeval/.julia/packages/SBMLToolkit/7Hd7h/test/simresults.jl:22 Expression: sum(Vector(df[i, ["expected_err", "res"]])) == 1 Evaluated: 0 == 1 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] top-level scope @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/simresults.jl:22 [3] include(mod::Module, _path::String) @ Base ./Base.jl:495 [4] include(x::String) @ Main.var"##SBMLToolkit.jl#225".var"##Simulation results#232" ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [5] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:23 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [7] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:23 [inlined] [8] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 [9] eval(m::Module, e::Any) @ Core ./boot.jl:385 [10] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] [11] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:22 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [13] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:4 [inlined] [14] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Simulation results: Test Failed at /home/pkgeval/.julia/packages/SBMLToolkit/7Hd7h/test/simresults.jl:22 Expression: sum(Vector(df[i, ["expected_err", "res"]])) == 1 Evaluated: 0 == 1 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:672 [inlined] [2] top-level scope @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/simresults.jl:22 [3] include(mod::Module, _path::String) @ Base ./Base.jl:495 [4] include(x::String) @ Main.var"##SBMLToolkit.jl#225".var"##Simulation results#232" ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [5] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:23 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [7] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:23 [inlined] [8] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 [9] eval(m::Module, e::Any) @ Core ./boot.jl:385 [10] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] [11] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:22 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [13] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:4 [inlined] [14] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 ┌ Warning: SBML SpeciesReferences does not contain stoichiometries. Assuming stoichiometry of 1. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:92 ┌ Warning: Stoichiometries of SpeciesReferences are not defined. Setting to 1. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:117 Internal error: stack overflow in type inference of remake_initialization_data(ModelingToolkit.ODESystem, NamedTuple{(:initialization_data,), Tuple{SciMLBase.OverrideInitData{SciMLBase.NonlinearProblem{Nothing, true, ModelingToolkit.MTKParameters{Array{Float64, 1}, StaticArraysCore.SizedArray{Tuple{0}, Float64, 1, 1, Array{Float64, 1}}, Tuple{}, Tuple{}, Tuple{}, Tuple{}}, SciMLBase.NonlinearFunction{true, SciMLBase.FullSpecialize, ModelingToolkit.GeneratedFunctionWrapper{(2, 2, true), RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0xbe041dc0, 0x3062d76b, 0xcbd25ec1, 0x5efe68de, 0x5e657477), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0x4c8efb05, 0x4d446059, 0xb34af925, 0x6f42cf33, 0x2ea23de3), Nothing}}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, ModelingToolkit.ObservedFunctionCache{ModelingToolkit.NonlinearSystem}, Nothing, ModelingToolkit.NonlinearSystem, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, SciMLBase.StandardNonlinearProblem}, typeof(ModelingToolkit.update_initializeprob!), Base.ComposedFunction{typeof(Base.identity), SymbolicIndexingInterface.TimeIndependentObservedFunction{ModelingToolkit.GeneratedFunctionWrapper{(2, 2, true), RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0x44f1f929, 0x074fa19f, 0x0b338b14, 0x5f8cc218, 0xdb83e5b3), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0xee58d8b1, 0xc14d46d0, 0x4ada717f, 0x7b6f9f6e, 0x51eec92f), Nothing}}}}, ModelingToolkit.var"#initprobpmap_split#806"{ModelingToolkit.var"#_getter#802"{Tuple{Base.ComposedFunction{ModelingToolkit.PConstructorApplicator{typeof(Base.identity)}, ModelingToolkit.ObservedWrapper{false, ModelingToolkit.GeneratedFunctionWrapper{(2, 2, true), RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0x81dfa927, 0x09ecb0e5, 0x7d18ed36, 0xb0240d65, 0x7867026b), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0x34648166, 0xeb27687a, 0x9f50ad3d, 0x568baeb6, 0xe5cc9e0e), Nothing}}}}, Base.ComposedFunction{ModelingToolkit.PConstructorApplicator{typeof(Base.identity)}, ModelingToolkit.ObservedWrapper{false, ModelingToolkit.GeneratedFunctionWrapper{(2, 2, true), RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0xcaff15cf, 0x02666fc1, 0x339db845, 0x3508f788, 0xc00a05eb), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :__mtk_arg_1, :___mtkparameters___), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0x407fad54, 0x9a067b13, 0x5c126250, 0x9d1fe42e, 0x179b415d), Nothing}}}}, Base.Returns{Tuple{}}, Base.Returns{Tuple{}}, Base.Returns{Tuple{}}}}}, ModelingToolkit.InitializationMetadata{ModelingToolkit.ReconstructInitializeprob{ModelingToolkit.var"#_getter#802"{Tuple{Base.ComposedFunction{ModelingToolkit.PConstructorApplicator{typeof(Base.identity)}, ModelingToolkit.ObservedWrapper{true, ModelingToolkit.GeneratedFunctionWrapper{(2, 3, true), RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:__mtk_arg_1, :___mtkparameters___, :t), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0x757206c6, 0x8ecc33ab, 0xfb4f6008, 0x5c4718b2, 0xe7fedbe4), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :__mtk_arg_1, :___mtkparameters___, :t), ModelingToolkit.var"#_RGF_ModTag", ModelingToolkit.var"#_RGF_ModTag", (0xcb6a5ea1, 0x50ca8d81, 0x2772df97, 0x622183a0, 0x6d0546ef), Nothing}}}}, Base.Returns{StaticArraysCore.SizedArray{Tuple{0}, Float64, 1, 1, Array{Float64, 1}}}, Base.Returns{Tuple{}}, Base.Returns{Tuple{}}, Base.Returns{Tuple{}}}}, Base.ComposedFunction{typeof(Base.identity), SymbolicIndexingInterface.MultipleGetters{SymbolicIndexingInterface.ContinuousTimeseries, Array{Any, 1}}}}, ModelingToolkit.GetUpdatedU0{SymbolicIndexingInterface.MultipleGetters{SymbolicIndexingInterface.ContinuousTimeseries, Array{SymbolicUtils.BasicSymbolic{Real}, 1}}, SymbolicIndexingInterface.MultipleParametersGetter{SymbolicIndexingInterface.IndexerNotTimeseries, Array{SymbolicIndexingInterface.GetParameterIndex{ModelingToolkit.ParameterIndex{SciMLStructures.Initials, Int64}}, 1}, Nothing}}, ModelingToolkit.SetInitialUnknowns{SymbolicIndexingInterface.MultipleSetters{Array{SymbolicIndexingInterface.ParameterHookWrapper{SymbolicIndexingInterface.SetParameterIndex{ModelingToolkit.ParameterIndex{SciMLStructures.Initials, Int64}}, SymbolicUtils.BasicSymbolic{Real}}, 1}}}}, Base.Val{true}}}}, Array{Float64, 1}, Int64, ModelingToolkit.MTKParameters{Array{Float64, 1}, Array{Float64, 1}, Tuple{}, Tuple{}, Tuple{}, Tuple{}}, Array{Float64, 1}, ModelingToolkit.MTKParameters{Array{Float64, 1}, Array{Float64, 1}, Tuple{}, Tuple{}, Tuple{}, Tuple{}}). This might be caused by recursion over very long tuples or argument lists. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 159 running 1 of 1 signal (10): User defined signal 1 _ZZN15LiveDebugValues16InstrRefBasedLDV13placeMLocPHIsERN4llvm15MachineFunctionERNS1_15SmallPtrSetImplIPNS1_17MachineBasicBlockEEERSt10unique_ptrIA_S9_IA_NS_10ValueIDNumESt14default_deleteISB_EESC_ISF_EERNS1_15SmallVectorImplINS1_13SmallDenseMapINS_6LocIdxESA_Lj4ENS1_12DenseMapInfoISL_vEENS1_6detail12DenseMapPairISL_SA_EEEEEEENKUlSL_E_clESL_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN15LiveDebugValues16InstrRefBasedLDV13placeMLocPHIsERN4llvm15MachineFunctionERNS1_15SmallPtrSetImplIPNS1_17MachineBasicBlockEEERSt10unique_ptrIA_S9_IA_NS_10ValueIDNumESt14default_deleteISB_EESC_ISF_EERNS1_15SmallVectorImplINS1_13SmallDenseMapINS_6LocIdxESA_Lj4ENS1_12DenseMapInfoISL_vEENS1_6detail12DenseMapPairISL_SA_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN15LiveDebugValues16InstrRefBasedLDV17buildMLocValueMapERN4llvm15MachineFunctionERSt10unique_ptrIA_S4_IA_NS_10ValueIDNumESt14default_deleteIS6_EES7_ISA_EESD_RNS1_15SmallVectorImplINS1_13SmallDenseMapINS_6LocIdxES5_Lj4ENS1_12DenseMapInfoISG_vEENS1_6detail12DenseMapPairISG_S5_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN15LiveDebugValues16InstrRefBasedLDV12ExtendRangesERN4llvm15MachineFunctionEPNS1_20MachineDominatorTreeEPNS1_16TargetPassConfigEjj at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.66 at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) operator() at /source/src/jitlayers.cpp:1311 _ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) emit at /source/src/jitlayers.cpp:724 _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession12dispatchTaskESt10unique_ptrINS0_4TaskESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1604 jl_add_to_ee at /source/src/jitlayers.cpp:2015 jl_add_to_ee at /source/src/jitlayers.cpp:1994 _jl_compile_codeinst at /source/src/jitlayers.cpp:276 jl_generate_fptr_impl at /source/src/jitlayers.cpp:528 jl_compile_method_internal at /source/src/gf.c:2481 [inlined] jl_compile_method_internal at /source/src/gf.c:2368 gen_cfun_wrapper at /source/src/codegen.cpp:6054 emit_cfunction at /source/src/codegen.cpp:6692 [inlined] emit_expr at /source/src/codegen.cpp:5530 emit_ssaval_assign at /source/src/codegen.cpp:5101 emit_stmtpos at /source/src/codegen.cpp:5335 [inlined] emit_function at /source/src/codegen.cpp:8384 jl_emit_code at /source/src/codegen.cpp:8719 jl_emit_codeinst at /source/src/codegen.cpp:8793 _jl_compile_codeinst at /source/src/jitlayers.cpp:221 jl_generate_fptr_impl at /source/src/jitlayers.cpp:528 jl_compile_method_internal at /source/src/gf.c:2481 [inlined] jl_compile_method_internal at /source/src/gf.c:2368 _jl_invoke at /source/src/gf.c:2887 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #4 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/ext/DiffEqBaseForwardDiffExt.jl:84 unknown function (ip: 0x7ded7dac25f9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 map at ./tuple.jl:322 [inlined] wrapfun_iip at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/ext/DiffEqBaseForwardDiffExt.jl:83 promote_f at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1403 [inlined] #get_concrete_problem#61 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1312 get_concrete_problem at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1301 [inlined] #solve_up#45 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1193 [inlined] solve_up at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1177 [inlined] #solve#43 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1089 [inlined] solve at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1079 unknown function (ip: 0x7ded7dac24c7) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 unknown function (ip: 0x7ded7dbce3c5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 jfptr_eval_25794.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 jfptr_eval_25794.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7ded9ea7f125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ded9f91f249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74802.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x760697dd9d50) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x760697dd2635) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x760697dd2120) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x760697dd19e0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x760697dce0d9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x760698c1c249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000076068b600010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:1915; test ╎ ╎ ╎ 1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty… ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …/condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericConditi… ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1008; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL… [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 [159] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/SBMLToolkit/7Hd7h/test/wuschel.jl:19 jl_gc_pool_alloc_inner at /source/src/gc.c:1296 jl_gc_pool_alloc_noinline at /source/src/gc.c:1350 [inlined] jl_gc_alloc_ at /source/src/julia_internal.h:478 [inlined] jl_gc_alloc at /source/src/gc.c:3576 poptask at ./task.jl:999 jl_decode_value_any at /source/src/ircode.c:613 [inlined] jl_decode_value at /source/src/ircode.c:759 jl_decode_value_expr at /source/src/ircode.c:558 [inlined] jl_decode_value at /source/src/ircode.c:685 jl_decode_value_array at /source/src/ircode.c:501 jl_decode_value at /source/src/ircode.c:680 ijl_uncompress_ir at /source/src/ircode.c:902 jl_emit_codeinst at /source/src/codegen.cpp:8786 jl_compile_workqueue at /source/src/codegen.cpp:8917 _jl_compile_codeinst at /source/src/jitlayers.cpp:226 jl_generate_fptr_impl at /source/src/jitlayers.cpp:528 jl_compile_method_internal at /source/src/gf.c:2481 [inlined] jl_compile_method_internal at /source/src/gf.c:2368 gen_cfun_wrapper at /source/src/codegen.cpp:6054 emit_cfunction at /source/src/codegen.cpp:6692 [inlined] emit_expr at /source/src/codegen.cpp:5530 emit_ssaval_assign at /source/src/codegen.cpp:5101 emit_stmtpos at /source/src/codegen.cpp:5335 [inlined] emit_function at /source/src/codegen.cpp:8384 jl_emit_code at /source/src/codegen.cpp:8719 jl_emit_codeinst at /source/src/codegen.cpp:8793 _jl_compile_codeinst at /source/src/jitlayers.cpp:221 jl_generate_fptr_impl at /source/src/jitlayers.cpp:528 jl_compile_method_internal at /source/src/gf.c:2481 [inlined] jl_compile_method_internal at /source/src/gf.c:2368 _jl_invoke at /source/src/gf.c:2887 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #4 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/ext/DiffEqBaseForwardDiffExt.jl:84 map at ./tuple.jl:322 unknown function (ip: 0x7ded86593bca) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 map at ./tuple.jl:322 [inlined] wrapfun_iip at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/ext/DiffEqBaseForwardDiffExt.jl:83 promote_f at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1403 [inlined] #get_concrete_problem#61 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1312 get_concrete_problem at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1301 [inlined] #solve_up#45 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1193 [inlined] solve_up at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1177 [inlined] #solve#43 at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1089 [inlined] solve at /home/pkgeval/.julia/packages/DiffEqBase/5hvMq/src/solve.jl:1079 unknown function (ip: 0x7ded7dac24c7) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 wait at ./task.jl:1008 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 #wait#647 at ./condition.jl:130 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 _include at ./loading.jl:2206 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 include at ./Base.jl:495 #1058 at ./Base.jl:608 jfptr_YY.1058_85318.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 18108283 (Pool: 18065661; Big: 42622); GC: 15 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 unknown function (ip: 0x7ded7dbce3c5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 jfptr_eval_25794.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 jfptr_eval_25794.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 PkgEval terminated after 2728.47s: test duration exceeded the time limit