Package evaluation of RetentionParameterEstimator on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-07T03:36:36.532 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.91s ################################################################################ # Installation # Installing RetentionParameterEstimator... Resolving package versions... Installed FFMPEG ─ v0.2.4 Updating `~/.julia/environments/v1.10/Project.toml` [0afdae40] + RetentionParameterEstimator v0.2.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [6e696c72] + AbstractPlutoDingetjes v1.3.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [e2ed5e7c] + Bijections v0.1.10 [b99e7846] + BinaryProvider v0.5.10 [d1d4a3ce] + BitFlags v0.1.9 [c3b6d118] + BitIntegers v0.3.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [a134a8b2] + BlackBoxOptim v0.6.3 [70df07ce] + BracketingNonlinearSolve v1.3.0 [8d3b24bd] + CMAEvolutionStrategy v0.2.6 [2a0fbf3d] + CPUSummary v0.2.6 [a9c8d775] + CPUTime v1.0.0 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LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building FFMPEG → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9143266ba77d3313a4cf61d8333a1970e8c5d8b6/build.log` Installation completed after 46.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 302 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 #728 at ./asyncevent.jl:304 jfptr_YY.728_76138.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 success at ./process.jl:523 [inlined] #run#800 at ./process.jl:480 run at ./process.jl:477 unknown function (ip: 0x74c914ad7315) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74c9158e2249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007ade23e6b080 Total snapshots: 466. Utilization: 0% ╎466 @Base/asyncevent.jl:304; (::Base.var"#728#729"{FileWatching.Pidfile.var… ╎ 466 @Base/asyncevent.jl:142; _trywait(t::Timer) ╎ 466 @Base/condition.jl:125; wait ╎ 466 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S… ╎ 466 @Base/task.jl:1008; wait() 465╎ 466 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchronized… ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000074c908200010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Base/process.jl:477; run(::Cmd) ╎ ╎ 1 @Base/process.jl:480; run(::Cmd; wait::Bool) ╎ ╎ 1 @Base/process.jl:523; success ╎ ╎ 1 @Base/process.jl:661; wait(x::Base.Process) ╎ ╎ 1 @Base/condition.jl:125; wait ╎ ╎ ╎ 1 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threa… ╎ ╎ ╎ 1 @Base/task.jl:1008; wait() ╎ ╎ ╎ 1 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchron… [302] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:37 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:152 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 poptask at ./task.jl:999 wait at ./task.jl:1008 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 #728 at ./asyncevent.jl:304 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 jfptr_YY.728_76138.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 81340795 (Pool: 80903259; Big: 437536); GC: 150 #1058 at ./Base.jl:608 jfptr_YY.1058_85318.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 ┌ Warning: Failed to clean up temporary path "/tmp/jl_MR1ICE" │ ErrorException("schedule: Task not runnable") └ @ Base.Filesystem file.jl:549 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 7157496 (Pool: 7140536; Big: 16960); GC: 11 schedule: Task not runnable PkgEval terminated after 2824.99s: test duration exceeded the time limit