Package evaluation of ReactionSensitivity on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-07T02:21:03.833


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.17s


################################################################################
# Installation
#

Installing ReactionSensitivity...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [ed25ef7a] + ReactionSensitivity v0.1.0
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [621f4979] + AbstractFFTs v1.5.0
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [a95523ee] + AlmostBlockDiagonals v0.1.10
  [dce04be8] + ArgCheck v2.5.0
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.19.0
  [4c555306] + ArrayLayouts v1.11.1
  [13072b0f] + AxisAlgorithms v1.1.0
  [aae01518] + BandedMatrices v1.9.4
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
⌃ [ae347489] + BatchReactor v0.1.2
  [0e736298] + Bessels v0.2.8
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [764a87c0] + BoundaryValueDiffEq v5.17.0
  [7227322d] + BoundaryValueDiffEqAscher v1.6.1
  [56b672f2] + BoundaryValueDiffEqCore v1.9.0
  [85d9eb09] + BoundaryValueDiffEqFIRK v1.7.0
  [1a22d4ce] + BoundaryValueDiffEqMIRK v1.7.0
  [9255f1d6] + BoundaryValueDiffEqMIRKN v1.6.1
  [ed55bfe0] + BoundaryValueDiffEqShooting v1.7.0
  [70df07ce] + BracketingNonlinearSolve v1.3.0
  [fa961155] + CEnum v0.5.0
  [2a0fbf3d] + CPUSummary v0.2.6
  [d360d2e6] + ChainRulesCore v1.25.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [861a8166] + Combinatorics v1.0.3
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [ab4b797d] + ComplexityMeasures v3.8.1
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.5.8
  [ae264745] + Copulas v0.1.29
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [717857b8] + DSP v0.8.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [bcd4f6db] + DelayDiffEq v5.53.1
  [5732040d] + DelayEmbeddings v2.9.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [2b5f629d] + DiffEqBase v6.175.0
  [459566f4] + DiffEqCallbacks v4.6.0
  [77a26b50] + DiffEqNoiseProcess v5.24.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [0c46a032] + DifferentialEquations v7.16.1
⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.4
  [4e289a0a] + EnumX v1.0.5
  [f151be2c] + EnzymeCore v0.8.11
  [d4d017d3] + ExponentialUtilities v1.27.0
  [e2ba6199] + ExprTools v0.1.10
  [55351af7] + ExproniconLite v0.10.14
  [7a1cc6ca] + FFTW v1.9.0
  [9d29842c] + FastAlmostBandedMatrices v0.1.5
  [7034ab61] + FastBroadcast v0.3.5
  [9aa1b823] + FastClosures v0.3.2
  [442a2c76] + FastGaussQuadrature v1.0.2
  [a4df4552] + FastPower v1.1.2
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
⌅ [f6369f11] + ForwardDiff v0.10.38
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [d9f16b24] + Functors v0.5.2
  [46192b85] + GPUArraysCore v0.2.0
⌃ [ceedd18c] + GasphaseReactions v0.1.1
  [c145ed77] + GenericSchur v0.5.5
  [af5da776] + GlobalSensitivity v2.7.0
  [86223c79] + Graphs v1.13.0
  [19dc6840] + HCubature v1.7.0
  [34004b35] + HypergeometricFunctions v0.3.28
⌃ [7aa10a8e] + IdealGas v0.1.4
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.5
  [22cec73e] + InitialValues v0.3.1
  [18e54dd8] + IntegerMathUtils v0.1.2
⌅ [a98d9a8b] + Interpolations v0.15.1
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.4
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [ae98c720] + Jieko v0.2.1
  [ccbc3e58] + JumpProcesses v9.15.0
  [5ab0869b] + KernelDensity v0.6.9
  [ba0b0d4f] + Krylov v0.10.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [a5e1c1ea] + LatinHypercubeSampling v1.9.0
  [73f95e8e] + LatticeRules v0.0.1
  [10f19ff3] + LayoutPointers v0.1.17
  [5078a376] + LazyArrays v2.6.1
  [2d8b4e74] + LevyArea v1.0.0
  [9c8b4983] + LightXML v0.9.1
  [87fe0de2] + LineSearch v0.1.4
  [d3d80556] + LineSearches v7.3.0
  [7ed4a6bd] + LinearSolve v3.17.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [d125e4d3] + ManualMemory v0.1.8
  [a3b82374] + MatrixFactorizations v3.0.1
  [bb5d69b7] + MaybeInplace v0.1.4
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [2e0e35c7] + Moshi v0.3.5
  [46d2c3a1] + MuladdMacro v0.2.4
  [37188c8d] + MvNormalCDF v0.3.2
  [d41bc354] + NLSolversBase v7.9.1
  [2774e3e8] + NLsolve v4.5.1
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.21
  [645ca80c] + Neighborhood v0.2.4
  [8913a72c] + NonlinearSolve v4.9.0
  [be0214bd] + NonlinearSolveBase v1.12.0
  [5959db7a] + NonlinearSolveFirstOrder v1.5.0
  [9a2c21bd] + NonlinearSolveQuasiNewton v1.6.0
  [26075421] + NonlinearSolveSpectralMethods v1.2.0
  [6fe1bfb0] + OffsetArrays v1.17.0
  [429524aa] + Optim v1.12.0
  [bac558e1] + OrderedCollections v1.8.1
  [1dea7af3] + OrdinaryDiffEq v6.98.0
  [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.2.0
  [6ad6398a] + OrdinaryDiffEqBDF v1.5.1
  [bbf590c4] + OrdinaryDiffEqCore v1.26.0
  [50262376] + OrdinaryDiffEqDefault v1.4.0
  [4302a76b] + OrdinaryDiffEqDifferentiation v1.9.1
  [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0
  [e0540318] + OrdinaryDiffEqExponentialRK v1.4.0
  [becaefa8] + OrdinaryDiffEqExtrapolation v1.5.0
  [5960d6e9] + OrdinaryDiffEqFIRK v1.12.0
  [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0
  [d3585ca7] + OrdinaryDiffEqFunctionMap v1.1.1
  [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.1.0
  [9f002381] + OrdinaryDiffEqIMEXMultistep v1.3.0
  [521117fe] + OrdinaryDiffEqLinear v1.3.0
  [1344f307] + OrdinaryDiffEqLowOrderRK v1.2.0
  [b0944070] + OrdinaryDiffEqLowStorageRK v1.3.0
  [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.10.0
  [c9986a66] + OrdinaryDiffEqNordsieck v1.1.0
  [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.3.1
  [5b33eab2] + OrdinaryDiffEqPRK v1.1.0
  [04162be5] + OrdinaryDiffEqQPRK v1.1.0
  [af6ede74] + OrdinaryDiffEqRKN v1.1.0
  [43230ef6] + OrdinaryDiffEqRosenbrock v1.10.1
  [2d112036] + OrdinaryDiffEqSDIRK v1.3.0
  [669c94d9] + OrdinaryDiffEqSSPRK v1.3.0
  [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.3.0
  [358294b1] + OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] + OrdinaryDiffEqSymplecticRK v1.3.0
  [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] + OrdinaryDiffEqVerner v1.2.0
  [90014a1f] + PDMats v0.11.35
  [d96e819e] + Parameters v0.12.3
⌃ [ecaff61d] + PlugFlowReactor v0.1.1
  [e409e4f3] + PoissonRandom v0.4.4
  [f517fe37] + Polyester v0.7.18
  [1d0040c9] + PolyesterWeave v0.2.2
  [f27b6e38] + Polynomials v4.0.19
  [85a6dd25] + PositiveFactorizations v0.2.4
  [d236fae5] + PreallocationTools v0.4.27
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [27ebfcd6] + Primes v0.5.7
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
⌅ [8a4e6c94] + QuasiMonteCarlo v0.2.19
  [74087812] + Random123 v1.7.1
  [e6cf234a] + RandomNumbers v1.6.0
  [c84ed2f1] + Ratios v0.4.5
⌅ [3fc4dfc6] + ReactionCommons v0.1.8
  [ed25ef7a] + ReactionSensitivity v0.1.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [731186ca] + RecursiveArrayTools v3.33.0
  [189a3867] + Reexport v1.2.2
  [42d2dcc6] + Referenceables v0.1.3
  [ae029012] + Requires v1.3.1
  [ae5879a3] + ResettableStacks v1.1.1
  [79098fc4] + Rmath v0.8.0
  [f2b01f46] + Roots v2.2.7
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.15
⌅ [58b8660e] + RxnHelperUtils v0.1.9
  [94e857df] + SIMDTypes v0.1.0
  [0bca4576] + SciMLBase v2.97.0
  [19f34311] + SciMLJacobianOperators v0.1.6
  [c0aeaf25] + SciMLOperators v1.3.1
  [53ae85a6] + SciMLStructures v1.7.0
  [efcf1570] + Setfield v1.1.2
  [727e6d20] + SimpleNonlinearSolve v2.5.0
  [699a6c99] + SimpleTraits v0.9.4
  [ce78b400] + SimpleUnPack v1.1.0
  [ed01d8cd] + Sobol v1.5.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [9f842d2f] + SparseConnectivityTracer v0.6.19
  [0a514795] + SparseMatrixColorings v0.4.20
  [276daf66] + SpecialFunctions v2.5.1
  [171d559e] + SplittablesBase v0.1.15
  [860ef19b] + StableRNGs v1.0.3
  [40b095a5] + StateSpaceSets v2.4.0
  [aedffcd0] + Static v1.2.0
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.0
  [9672c7b4] + SteadyStateDiffEq v2.5.0
⌃ [0f306737] + StirredReactor v0.1.3
  [789caeaf] + StochasticDiffEq v6.80.0
  [7792a7ef] + StrideArraysCore v0.5.7
  [892a3eda] + StringManipulation v0.4.1
  [c3572dad] + Sundials v4.28.0
⌃ [59f5dcf9] + SurfaceReactions v0.1.2
  [2efcf032] + SymbolicIndexingInterface v0.3.40
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
⌅ [6aa5eb33] + TaylorSeries v0.18.5
  [8290d209] + ThreadingUtilities v0.5.4
  [ac1d9e8a] + ThreadsX v0.1.12
  [a759f4b9] + TimerOutputs v0.5.29
  [28d57a85] + Transducers v0.4.84
  [592b5752] + Trapz v2.0.3
  [781d530d] + TruncatedStacktraces v1.4.0
  [3a884ed6] + UnPack v1.0.2
  [29a6e085] + Wavelets v0.10.1
  [48feb556] + WilliamsonTransforms v0.1.6
  [efce3f68] + WoodburyMatrices v1.0.0
  [f5851436] + FFTW_jll v3.3.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [856f044c] + MKL_jll v2025.0.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
⌅ [fb77eaff] + Sundials_jll v5.2.2+0
⌅ [02c8fc9c] + XML2_jll v2.13.6+1
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [4af54fe1] + LazyArtifacts
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 9.75s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 6 running 0 of 1

signal (10): User defined signal 1
epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236
uv_run at /workspace/srcdir/libuv/src/unix/core.c:400
ijl_task_get_next at /source/src/partr.c:478
poptask at ./task.jl:999
wait at ./task.jl:1008
#wait#647 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:142
#728 at ./asyncevent.jl:304
jfptr_YY.728_76138.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
start_task at /source/src/task.c:1256
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236
uv_run at /workspace/srcdir/libuv/src/unix/core.c:400
ijl_task_get_next at /source/src/partr.c:478
poptask at ./task.jl:999
wait at ./task.jl:1008
task_done_hook at ./task.jl:682
jfptr_task_done_hook_75433.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
jl_finish_task at /source/src/task.c:327
start_task at /source/src/task.c:1267
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x0000776ccb4fb3a0 Total snapshots: 130. Utilization: 0%
   ╎130 @Base/asyncevent.jl:304; (::Base.var"#728#729"{FileWatching.Pidfile.var…
   ╎ 130 @Base/asyncevent.jl:142; _trywait(t::Timer)
   ╎  130 @Base/condition.jl:125; wait
   ╎   130 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    130 @Base/task.jl:1008; wait()
129╎     130 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchronized…

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x000079b662cbdc30 Total snapshots: 1. Utilization: 0%
 ╎1 @Base/task.jl:682; task_done_hook(t::Task)
 ╎ 1 @Base/task.jl:1008; wait()
 ╎  1 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchronized{Task})


[1] signal (15): Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:152
epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236
uv_run at /workspace/srcdir/libuv/src/unix/core.c:400
ijl_task_get_next at /source/src/partr.c:478

[6] signal (15): Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236
uv_run at /workspace/srcdir/libuv/src/unix/core.c:400
ijl_task_get_next at /source/src/partr.c:478
poptask at ./task.jl:999
poptask at ./task.jl:999
wait at ./task.jl:1008
wait at ./task.jl:1008
#wait#647 at ./condition.jl:130
#wait#647 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:142
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:142
wait at ./asyncevent.jl:159 [inlined]
profile_printing_listener at ./Base.jl:572
#728 at ./asyncevent.jl:304
#1058 at ./Base.jl:608
jfptr_YY.728_76138.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
jl_apply at /source/src/julia.h:1982 [inlined]
start_task at /source/src/task.c:1256
unknown function (ip: (nil))
Allocations: 97041650 (Pool: 96426744; Big: 614906); GC: 185
jfptr_YY.1058_85318.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2876 [inlined]
ijl_apply_generic at /source/src/gf.c:3077
┌ Warning: Failed to clean up temporary path "/tmp/jl_FowPAS"
│ ErrorException("schedule: Task not runnable")
└ @ Base.Filesystem file.jl:549
jl_apply at /source/src/julia.h:1982 [inlined]
start_task at /source/src/task.c:1256
unknown function (ip: (nil))
Allocations: 7209039 (Pool: 7192192; Big: 16847); GC: 11
schedule: Task not runnable
PkgEval terminated after 2777.21s: test duration exceeded the time limit