Package evaluation of ReactionMechanismSimulator on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-07T03:36:55.734 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.88s ################################################################################ # Installation # Installing ReactionMechanismSimulator... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [c2d78dd2] + ReactionMechanismSimulator v1.0.1 Updating `~/.julia/environments/v1.10/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.1.6 ⌅ [c3fe647b] + AbstractAlgebra v0.27.10 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 ⌃ [4fba245c] + ArrayInterface v7.7.1 [30b0a656] + ArrayInterfaceCore v0.1.29 ⌅ [a9b6321e] + Atomix v0.1.0 ⌅ [15f4f7f2] + AutoHashEquals v0.2.0 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 ⌅ [e2ed5e7c] + Bijections v0.1.10 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [fa961155] + CEnum v0.4.2 [2a0fbf3d] + CPUSummary v0.2.6 [00ebfdb7] + CSTParser v3.4.3 [336ed68f] + CSV v0.10.15 [49dc2e85] + Calculus v0.5.2 [7057c7e9] + Cassette v0.3.14 [aafaddc9] + CatIndices v0.2.2 [082447d4] + ChainRules v1.72.4 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.10.12 ⌅ [c3611d14] + ColorVectorSpace v0.8.7 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 ⌅ [a80b9123] + CommonMark v0.8.16 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [2569d6c7] + ConcreteStructs v0.2.3 [992eb4ea] + CondaPkg v0.2.29 ⌅ [187b0558] + ConstructionBase v1.5.6 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 ⌃ [2b5f629d] + DiffEqBase v6.130.0 ⌅ [459566f4] + DiffEqCallbacks v2.35.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 ⌅ [5b8099bc] + DomainSets v0.5.14 ⌅ [7c1d4256] + DynamicPolynomials v0.4.6 [da5c29d0] + EllipsisNotation v1.8.0 [4e289a0a] + EnumX v1.0.5 ⌅ [7da242da] + Enzyme v0.11.20 ⌅ [f151be2c] + EnzymeCore v0.6.6 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.9.0 ⌅ [7034ab61] + FastBroadcast v0.2.8 [9aa1b823] + FastClosures v0.3.2 ⌅ [442a2c76] + FastGaussQuadrature v0.5.1 [29a986be] + FastLapackInterface v2.0.4 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [59287772] + Formatting v0.4.3 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.4.12 ⌃ [0c68f7d7] + GPUArrays v9.1.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [61eb1bfa] + GPUCompiler v0.25.0 [c145ed77] + GenericSchur v0.5.5 [c27321d9] + Glob v1.3.1 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.0 ⌅ [0b43b601] + Groebner v0.2.11 ⌅ [d5909c97] + GroupsCore v0.4.2 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.14 [bbac6d45] + IdentityRanges v0.3.1 [615f187c] + IfElse v0.1.1 ⌃ [2803e5a7] + ImageAxes v0.6.9 ⌃ [f332f351] + ImageContrastAdjustment v0.3.7 ⌅ [a09fc81d] + ImageCore v0.8.22 ⌃ [51556ac3] + ImageDistances v0.2.13 ⌅ [6a3955dd] + ImageFiltering v0.6.21 ⌅ [82e4d734] + ImageIO v0.4.1 ⌃ [6218d12a] + ImageMagick v1.2.1 ⌃ [bc367c6b] + ImageMetadata v0.9.5 ⌅ [787d08f9] + ImageMorphology v0.2.11 ⌅ [2996bd0c] + ImageQualityIndexes v0.2.2 ⌃ [4e3cecfd] + ImageShow v0.3.1 ⌅ [02fcd773] + ImageTransformations v0.8.13 ⌅ [916415d5] + Images v0.24.1 [40713840] + IncompleteLU v0.2.1 ⌅ [9b13fd28] + IndirectArrays v0.5.1 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.3 [18e54dd8] + IntegerMathUtils v0.1.2 ⌅ [a98d9a8b] + Interpolations v0.13.6 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.3 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 ⌃ [ccbc3e58] + JumpProcesses v9.10.1 ⌅ [ef3ab10e] + KLU v0.4.1 ⌃ [63c18a36] + KernelAbstractions v0.9.18 ⌅ [ba0b0d4f] + Krylov v0.9.10 ⌅ [929cbde3] + LLVM v6.6.3 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [2ee39098] + LabelledArrays v1.15.1 ⌅ [984bce1d] + LambertW v0.4.6 ⌅ [23fbe1c1] + Latexify v0.15.21 [10f19ff3] + LayoutPointers v0.1.17 [2d8b4e74] + LevyArea v1.0.0 [d3d80556] + LineSearches v7.3.0 ⌅ [7ed4a6bd] + LinearSolve v2.14.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 ⌅ [2fda8390] + LsqFit v0.12.1 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 ⌅ [e9d8d322] + Metatheory v1.3.5 [128add7d] + MicroCollections v0.2.0 [0b3b1443] + MicroMamba v0.1.14 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v8.46.1 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 ⌅ [102ac46a] + MultivariatePolynomials v0.4.7 [d8a4904e] + MutableArithmetics v1.6.4 ⌃ [d41bc354] + NLSolversBase v7.8.3 [2774e3e8] + NLsolve v4.5.1 ⌃ [872c559c] + NNlib v0.9.28 [77ba4419] + NaNMath v1.1.3 ⌃ [f09324ee] + Netpbm v1.0.1 ⌅ [8913a72c] + NonlinearSolve v1.10.1 [d8793406] + ObjectFile v0.4.4 [6fe1bfb0] + OffsetArrays v1.17.0 ⌃ [429524aa] + Optim v1.11.0 [87e2bd06] + OptimBase v2.0.2 ⌃ [3bd65402] + Optimisers v0.4.0 [bac558e1] + OrderedCollections v1.8.1 ⌃ [1dea7af3] + OrdinaryDiffEq v6.58.2 [90014a1f] + PDMats v0.11.35 ⌅ [f57f5aa1] + PNGFiles v0.3.17 [65ce6f38] + PackageExtensionCompat v1.0.2 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌃ [d236fae5] + PreallocationTools v0.4.24 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [6099a3de] + PythonCall v0.9.25 [274fc56d] + PythonPlot v1.0.6 ⌃ [1fd47b50] + QuadGK v2.10.1 ⌃ [dca85d43] + QuartzImageIO v0.7.3 [94ee1d12] + Quaternions v0.7.6 [74087812] + Random123 v1.7.1 [fb686558] + RandomExtensions v0.4.4 [e6cf234a] + RandomNumbers v1.6.0 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c2d78dd2] + ReactionMechanismSimulator v1.0.1 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [f2c3362d] + RecursiveFactorization v0.2.23 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [37e2e3b7] + ReverseDiff v1.16.1 [79098fc4] + Rmath v0.8.0 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 ⌅ [0bca4576] + SciMLBase v1.98.1 [e9a6253c] + SciMLNLSolve v0.1.9 ⌅ [c0aeaf25] + SciMLOperators v0.3.13 ⌃ [1ed8b502] + SciMLSensitivity v7.38.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 ⌅ [727e6d20] + SimpleNonlinearSolve v0.1.23 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 ⌃ [102930c3] + SmoothingSplines v0.3.1 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 ⌃ [47a9eef4] + SparseDiffTools v2.4.1 [dc90abb0] + SparseInverseSubset v0.1.2 [e56a9233] + Sparspak v0.3.11 ⌅ [276daf66] + SpecialFunctions v1.8.8 [171d559e] + SplittablesBase v0.1.15 [cae243ae] + StackViews v0.1.2 ⌅ [aedffcd0] + Static v0.8.10 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 ⌃ [789caeaf] + StochasticDiffEq v6.62.0 [7792a7ef] + StrideArraysCore v0.5.7 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 ⌃ [09ab397b] + StructArrays v0.6.18 [53d494c1] + StructIO v0.3.1 [856f2bd8] + StructTypes v1.11.0 ⌃ [c3572dad] + Sundials v4.20.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 ⌅ [d1185830] + SymbolicUtils v0.19.11 ⌅ [0c5d862f] + Symbolics v4.14.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [8ea1fca8] + TermInterface v0.2.3 [8290d209] + ThreadingUtilities v0.5.4 [ac1d9e8a] + ThreadsX v0.1.12 ⌅ [06e1c1a7] + TiledIteration v0.3.1 [a759f4b9] + TimerOutputs v0.5.29 [0796e94c] + Tokenize v0.5.29 [9f7883ad] + Tracker v0.2.38 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [a2a6695c] + TreeViews v0.3.0 [d5829a12] + TriangularSolve v0.2.1 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.1 ⌅ [013be700] + UnsafeAtomics v0.2.1 ⌅ [d80eeb9a] + UnsafeAtomicsLLVM v0.1.5 [e17b2a0c] + UnsafePointers v1.0.0 [3d5dd08c] + VectorizationBase v0.21.71 [81def892] + VersionParsing v1.3.0 [19fa3120] + VertexSafeGraphs v0.2.0 [ea10d353] + WeakRefStrings v1.4.2 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.14 ⌅ [e88e6eb3] + Zygote v0.6.77 [700de1a5] + ZygoteRules v0.2.7 ⌅ [7cc45869] + Enzyme_jll v0.0.102+0 [f5851436] + FFTW_jll v3.3.11+0 [61579ee1] + Ghostscript_jll v9.55.0+4 ⌅ [c73af94c] + ImageMagick_jll v6.9.13025+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [88015f11] + LERC_jll v4.0.1+0 ⌅ [dad2f222] + LLVMExtra_jll v0.0.29+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [d3a379c0] + LittleCMS_jll v2.16.0+0 [856f044c] + MKL_jll v2025.0.1+1 [643b3616] + OpenJpeg_jll v2.5.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [fb77eaff] + Sundials_jll v5.2.2+0 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [b53b4c65] + libpng_jll v1.6.48+0 [f8abcde7] + micromamba_jll v1.5.8+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.51s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1708.29s ################################################################################ # Testing # Testing ReactionMechanismSimulator Status `/tmp/jl_nwvMq3/Project.toml` [336ed68f] CSV v0.10.15 [49dc2e85] Calculus v0.5.2 ⌅ [5ae59095] Colors v0.12.11 [992eb4ea] CondaPkg v0.2.29 [a93c6f00] DataFrames v1.7.0 ⌅ [442a2c76] FastGaussQuadrature v0.5.1 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [916415d5] Images v0.24.1 [40713840] IncompleteLU v0.2.1 [c8e1da08] IterTools v1.10.0 ⌅ [2fda8390] LsqFit v0.12.1 [0b3b1443] MicroMamba v0.1.14 ⌅ [961ee093] ModelingToolkit v8.46.1 ⌃ [1dea7af3] OrdinaryDiffEq v6.58.2 [d96e819e] Parameters v0.12.3 ⌃ [d236fae5] PreallocationTools v0.4.24 [6099a3de] PythonCall v0.9.25 [274fc56d] PythonPlot v1.0.6 ⌃ [dca85d43] QuartzImageIO v0.7.3 [c2d78dd2] ReactionMechanismSimulator v1.0.1 ⌅ [731186ca] RecursiveArrayTools v2.38.10 [37e2e3b7] ReverseDiff v1.16.1 ⌅ [0bca4576] SciMLBase v1.98.1 ⌃ [1ed8b502] SciMLSensitivity v7.38.0 ⌃ [102930c3] SmoothingSplines v0.3.1 ⌅ [276daf66] SpecialFunctions v1.8.8 [90137ffa] StaticArrays v1.9.13 ⌃ [c3572dad] Sundials v4.20.1 ⌅ [0c5d862f] Symbolics v4.14.0 [9f7883ad] Tracker v0.2.38 [1986cc42] Unitful v1.22.1 [ddb6d928] YAML v0.4.14 [37e2e46d] LinearAlgebra [56ddb016] Logging [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_nwvMq3/Manifest.toml` ⌅ [47edcb42] ADTypes v0.1.6 ⌅ [c3fe647b] AbstractAlgebra v0.27.10 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌅ [a9b6321e] Atomix v0.1.0 ⌅ [15f4f7f2] AutoHashEquals v0.2.0 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 ⌅ [e2ed5e7c] Bijections v0.1.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml CondaPkg Resolving changes + libstdcxx-ng + matplotlib + python CondaPkg Creating environment │ /home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba │ -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root │ create │ -y │ -p /tmp/jl_nwvMq3/.CondaPkg/env │ --override-channels │ libstdcxx-ng[version='>=3.4,<14.0'] │ matplotlib[version='>=1'] │ python[version='>=3.8,<4',channel='conda-forge',build='*cpython*'] └ -c conda-forge conda-forge/linux-64 Using cache conda-forge/noarch Using cache Transaction Prefix: /tmp/jl_nwvMq3/.CondaPkg/env Updating specs: - libstdcxx-ng[version='>=3.4,<14.0'] - matplotlib[version='>=1'] - conda-forge::python[version='>=3.8,<4',build=*cpython*] Package Version Build Channel Size 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10.45 hc749103_0 conda-forge Cached + xorg-libsm 1.2.6 he73a12e_0 conda-forge Cached + libtiff 4.7.0 hf01ce69_5 conda-forge Cached + graphite2 1.3.13 h59595ed_1003 conda-forge Cached + icu 75.1 he02047a_0 conda-forge Cached + qhull 2020.2 h434a139_5 conda-forge Cached + libopenblas 0.3.27 pthreads_hac2b453_1 conda-forge Cached + brotli 1.1.0 hb9d3cd8_3 conda-forge Cached + libglx 1.7.0 ha4b6fd6_2 conda-forge Cached + xorg-libxrender 0.9.12 hb9d3cd8_0 conda-forge Cached + xkeyboard-config 2.44 hb9d3cd8_0 conda-forge Cached + xorg-libxfixes 6.0.1 hb9d3cd8_0 conda-forge Cached + xorg-libxext 1.3.6 hb9d3cd8_0 conda-forge Cached + xcb-util-image 0.4.0 hb711507_2 conda-forge Cached + libfreetype 2.13.3 ha770c72_1 conda-forge Cached + libglib 2.84.2 h3618099_0 conda-forge Cached + openjpeg 2.5.3 h5fbd93e_0 conda-forge Cached + lcms2 2.17 h717163a_0 conda-forge Cached + libxml2 2.13.8 h4bc477f_0 conda-forge Cached + libblas 3.9.0 24_linux64_openblas conda-forge Cached + libgl 1.7.0 ha4b6fd6_2 conda-forge Cached + xorg-libxcomposite 0.4.6 hb9d3cd8_2 conda-forge Cached + xorg-libxcursor 1.2.3 hb9d3cd8_0 conda-forge Cached + xorg-libxi 1.8.2 hb9d3cd8_0 conda-forge Cached + xorg-libxxf86vm 1.1.6 hb9d3cd8_0 conda-forge Cached + xorg-libxrandr 1.5.4 hb9d3cd8_0 conda-forge Cached + xorg-libxdamage 1.1.6 hb9d3cd8_0 conda-forge Cached + xcb-util-cursor 0.1.5 hb9d3cd8_0 conda-forge Cached + freetype 2.13.3 ha770c72_1 conda-forge Cached + dbus 1.16.2 h3c4dab8_0 conda-forge Cached + libxkbcommon 1.10.0 h65c71a3_0 conda-forge Cached + libllvm20 20.1.6 he9d0ab4_0 conda-forge Cached + libxslt 1.1.39 h76b75d6_0 conda-forge Cached + libcblas 3.9.0 24_linux64_openblas conda-forge Cached + liblapack 3.9.0 24_linux64_openblas conda-forge Cached + xorg-libxtst 1.2.5 hb9d3cd8_3 conda-forge Cached + fontconfig 2.15.0 h7e30c49_1 conda-forge Cached + libclang-cpp20.1 20.1.6 default_h1df26ce_0 conda-forge Cached + libclang13 20.1.6 default_he06ed0a_0 conda-forge Cached + tzdata 2025b h78e105d_0 conda-forge Cached + ca-certificates 2025.4.26 hbd8a1cb_0 conda-forge Cached + python_abi 3.12 7_cp312 conda-forge Cached + font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge Cached + font-ttf-inconsolata 3.000 h77eed37_0 conda-forge Cached + font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge Cached + font-ttf-ubuntu 0.83 h77eed37_3 conda-forge Cached + fonts-conda-forge 1 0 conda-forge Cached + fonts-conda-ecosystem 1 0 conda-forge Cached + openssl 3.5.0 h7b32b05_1 conda-forge Cached + cairo 1.18.4 h3394656_0 conda-forge Cached + krb5 1.21.3 h659f571_0 conda-forge Cached + python 3.12.11 h9e4cc4f_0_cpython conda-forge Cached + harfbuzz 11.2.1 h3beb420_0 conda-forge Cached + cyrus-sasl 2.1.27 h54b06d7_7 conda-forge Cached + libcups 2.3.3 h4637d8d_4 conda-forge Cached + openldap 2.6.10 he970967_0 conda-forge Cached + libpq 17.5 h27ae623_0 conda-forge Cached + qt6-main 6.9.1 h0384650_0 conda-forge Cached + wheel 0.45.1 pyhd8ed1ab_1 conda-forge Cached + setuptools 80.9.0 pyhff2d567_0 conda-forge Cached + pip 25.1.1 pyh8b19718_0 conda-forge Cached + six 1.17.0 pyhd8ed1ab_0 conda-forge Cached + munkres 1.1.4 pyh9f0ad1d_0 conda-forge Cached + pyparsing 3.2.3 pyhd8ed1ab_1 conda-forge Cached + packaging 25.0 pyh29332c3_1 conda-forge Cached + cycler 0.12.1 pyhd8ed1ab_1 conda-forge Cached + python-dateutil 2.9.0.post0 pyhff2d567_1 conda-forge Cached + unicodedata2 16.0.0 py312h66e93f0_0 conda-forge Cached + pyside6 6.9.1 py312hdb827e4_0 conda-forge Cached + tornado 6.5.1 py312h66e93f0_0 conda-forge Cached + pillow 11.2.1 py312h80c1187_0 conda-forge Cached + numpy 2.2.6 py312h72c5963_0 conda-forge Cached + kiwisolver 1.4.8 py312h84d6215_0 conda-forge Cached + fonttools 4.58.2 py312h178313f_0 conda-forge Cached + contourpy 1.3.2 py312h68727a3_0 conda-forge Cached + matplotlib-base 3.10.3 py312hd3ec401_0 conda-forge Cached + matplotlib 3.10.3 py312h7900ff3_0 conda-forge Cached Summary: Install: 134 packages Total download: 0 B ────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking ld_impl_linux-64-2.43-h712a8e2_4 Linking _libgcc_mutex-0.1-conda_forge Linking libgomp-13.3.0-h767d61c_2 Linking libglvnd-1.7.0-ha4b6fd6_2 Linking _openmp_mutex-4.5-2_gnu Linking libopengl-1.7.0-ha4b6fd6_2 Linking libegl-1.7.0-ha4b6fd6_2 Linking libgcc-13.3.0-h767d61c_2 Linking libgfortran5-13.3.0-h20d96cc_2 Linking libntlm-1.8-hb9d3cd8_0 Linking libbrotlicommon-1.1.0-hb9d3cd8_3 Linking libdeflate-1.24-h86f0d12_0 Linking xorg-libxdmcp-1.1.5-hb9d3cd8_0 Linking pthread-stubs-0.4-hb9d3cd8_1002 Linking libiconv-1.18-h4ce23a2_1 Linking xorg-libxau-1.0.12-hb9d3cd8_0 Linking xorg-libice-1.1.2-hb9d3cd8_0 Linking alsa-lib-1.2.14-hb9d3cd8_0 Linking libwebp-base-1.5.0-h851e524_0 Linking libjpeg-turbo-3.1.0-hb9d3cd8_0 Linking ncurses-6.5-h2d0b736_3 Linking libzlib-1.3.1-hb9d3cd8_2 Linking liblzma-5.8.1-hb9d3cd8_2 Linking libffi-3.4.6-h2dba641_1 Linking libgcc-ng-13.3.0-h69a702a_2 Linking libexpat-2.7.0-h5888daf_0 Linking libstdcxx-13.3.0-h8f9b012_2 Linking libgfortran-13.3.0-h69a702a_2 Linking libbrotlienc-1.1.0-hb9d3cd8_3 Linking libbrotlidec-1.1.0-hb9d3cd8_3 Linking libxcb-1.17.0-h8a09558_0 Linking libedit-3.1.20250104-pl5321h7949ede_0 Linking readline-8.2-h8c095d6_2 Linking tk-8.6.13-noxft_hd72426e_102 Linking libsqlite-3.50.1-hee588c1_0 Linking libpng-1.6.47-h943b412_0 Linking libpciaccess-0.18-hd590300_0 Linking keyutils-1.6.1-h166bdaf_0 Linking libxcrypt-4.4.36-hd590300_1 Linking bzip2-1.0.8-h4bc722e_7 Linking libuuid-2.38.1-h0b41bf4_0 Linking libnsl-2.0.1-hd590300_0 Linking pixman-0.46.0-h29eaf8c_0 Linking lerc-4.0.0-h0aef613_1 Linking wayland-1.23.1-h3e06ad9_1 Linking zstd-1.5.7-hb8e6e7a_2 Linking double-conversion-3.3.1-h5888daf_0 Linking libstdcxx-ng-13.3.0-h4852527_2 Linking libgfortran-ng-13.3.0-h69a702a_2 Linking brotli-bin-1.1.0-hb9d3cd8_3 Linking xorg-libx11-1.8.12-h4f16b4b_0 Linking xcb-util-wm-0.4.2-hb711507_0 Linking xcb-util-renderutil-0.3.10-hb711507_0 Linking xcb-util-keysyms-0.4.1-hb711507_0 Linking xcb-util-0.4.1-hb711507_2 Linking libfreetype6-2.13.3-h48d6fc4_1 Linking libdrm-2.4.124-hb9d3cd8_0 Linking pcre2-10.45-hc749103_0 Linking xorg-libsm-1.2.6-he73a12e_0 Linking libtiff-4.7.0-hf01ce69_5 Linking graphite2-1.3.13-h59595ed_1003 Linking icu-75.1-he02047a_0 Linking qhull-2020.2-h434a139_5 Linking libopenblas-0.3.27-pthreads_hac2b453_1 Linking brotli-1.1.0-hb9d3cd8_3 Linking libglx-1.7.0-ha4b6fd6_2 Linking xorg-libxrender-0.9.12-hb9d3cd8_0 Linking xkeyboard-config-2.44-hb9d3cd8_0 Linking xorg-libxfixes-6.0.1-hb9d3cd8_0 Linking xorg-libxext-1.3.6-hb9d3cd8_0 Linking xcb-util-image-0.4.0-hb711507_2 Linking libfreetype-2.13.3-ha770c72_1 Linking libglib-2.84.2-h3618099_0 Linking openjpeg-2.5.3-h5fbd93e_0 Linking lcms2-2.17-h717163a_0 Linking libxml2-2.13.8-h4bc477f_0 Linking libblas-3.9.0-24_linux64_openblas Linking libgl-1.7.0-ha4b6fd6_2 Linking xorg-libxcomposite-0.4.6-hb9d3cd8_2 Linking xorg-libxcursor-1.2.3-hb9d3cd8_0 Linking xorg-libxi-1.8.2-hb9d3cd8_0 Linking xorg-libxxf86vm-1.1.6-hb9d3cd8_0 Linking xorg-libxrandr-1.5.4-hb9d3cd8_0 Linking xorg-libxdamage-1.1.6-hb9d3cd8_0 Linking xcb-util-cursor-0.1.5-hb9d3cd8_0 Linking freetype-2.13.3-ha770c72_1 Linking dbus-1.16.2-h3c4dab8_0 Linking libxkbcommon-1.10.0-h65c71a3_0 Linking libllvm20-20.1.6-he9d0ab4_0 Linking libxslt-1.1.39-h76b75d6_0 Linking libcblas-3.9.0-24_linux64_openblas Linking liblapack-3.9.0-24_linux64_openblas Linking xorg-libxtst-1.2.5-hb9d3cd8_3 Linking fontconfig-2.15.0-h7e30c49_1 Linking libclang-cpp20.1-20.1.6-default_h1df26ce_0 Linking libclang13-20.1.6-default_he06ed0a_0 Linking tzdata-2025b-h78e105d_0 Linking ca-certificates-2025.4.26-hbd8a1cb_0 Linking python_abi-3.12-7_cp312 Linking font-ttf-dejavu-sans-mono-2.37-hab24e00_0 Linking font-ttf-inconsolata-3.000-h77eed37_0 Linking font-ttf-source-code-pro-2.038-h77eed37_0 Linking font-ttf-ubuntu-0.83-h77eed37_3 Linking fonts-conda-forge-1-0 Linking fonts-conda-ecosystem-1-0 Linking openssl-3.5.0-h7b32b05_1 Linking cairo-1.18.4-h3394656_0 Linking krb5-1.21.3-h659f571_0 Linking python-3.12.11-h9e4cc4f_0_cpython Linking harfbuzz-11.2.1-h3beb420_0 Linking cyrus-sasl-2.1.27-h54b06d7_7 Linking libcups-2.3.3-h4637d8d_4 Linking openldap-2.6.10-he970967_0 Linking libpq-17.5-h27ae623_0 Linking qt6-main-6.9.1-h0384650_0 Linking wheel-0.45.1-pyhd8ed1ab_1 Linking setuptools-80.9.0-pyhff2d567_0 Linking pip-25.1.1-pyh8b19718_0 Linking six-1.17.0-pyhd8ed1ab_0 Linking munkres-1.1.4-pyh9f0ad1d_0 Linking pyparsing-3.2.3-pyhd8ed1ab_1 Linking packaging-25.0-pyh29332c3_1 Linking cycler-0.12.1-pyhd8ed1ab_1 Linking python-dateutil-2.9.0.post0-pyhff2d567_1 Linking unicodedata2-16.0.0-py312h66e93f0_0 Linking pyside6-6.9.1-py312hdb827e4_0 Linking tornado-6.5.1-py312h66e93f0_0 Linking pillow-11.2.1-py312h80c1187_0 Linking numpy-2.2.6-py312h72c5963_0 Linking kiwisolver-1.4.8-py312h84d6215_0 Linking fonttools-4.58.2-py312h178313f_0 Linking contourpy-1.3.2-py312h68727a3_0 Linking matplotlib-base-3.10.3-py312hd3ec401_0 Linking matplotlib-3.10.3-py312h7900ff3_0 Transaction finished To activate this environment, use: micromamba activate /tmp/jl_nwvMq3/.CondaPkg/env Or to execute a single command in this environment, use: micromamba run -p /tmp/jl_nwvMq3/.CondaPkg/env mycommand CondaPkg Found dependencies: /tmp/jl_nwvMq3/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml CondaPkg Resolving changes ~ matplotlib + pydot ~ python + rdkit + rmgmolecule CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba │ -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root │ install │ -y │ -p /tmp/jl_nwvMq3/.CondaPkg/env │ --override-channels │ libstdcxx-ng[version='>=3.4,<14.0'] │ matplotlib[version='>=1',channel='conda-forge'] │ pydot[version='>=2.0',channel='conda-forge'] │ python[version='3.9, >=3.8,<4',channel='conda-forge',build='*cpython*'] │ rdkit[version='*',channel='conda-forge'] │ rmgmolecule[version='>=0.3.0',channel='mjohnson541'] └ -c conda-forge conda-forge/linux-64 Using cache conda-forge/noarch Using cache Transaction Prefix: /tmp/jl_nwvMq3/.CondaPkg/env Updating specs: - libstdcxx-ng[version='>=3.4,<14.0'] - conda-forge::matplotlib[version='>=1'] - conda-forge::pydot[version='>=2.0'] - conda-forge::python[version='3.9, >=3.8,<4',build=*cpython*] - conda-forge::rdkit=* - mjohnson541::rmgmolecule[version='>=0.3.0'] Package Version Build Channel Size ─────────────────────────────────────────────────────────────────────────────────────────────── Install: ─────────────────────────────────────────────────────────────────────────────────────────────── + pcre 8.45 h9c3ff4c_0 conda-forge Cached + expat 2.7.0 h5888daf_0 conda-forge Cached + liblzma-devel 5.8.1 hb9d3cd8_2 conda-forge Cached + xz-gpl-tools 5.8.1 hbcc6ac9_2 conda-forge Cached + xz-tools 5.8.1 hb9d3cd8_2 conda-forge Cached + lp_solve 5.5.2.11 hd590300_0 conda-forge Cached + jpeg 9e h166bdaf_2 conda-forge Cached + nspr 4.36 h5888daf_0 conda-forge Cached + gettext-tools 0.24.1 h5888daf_0 conda-forge Cached + libasprintf 0.24.1 h8e693c7_0 conda-forge Cached + libgettextpo 0.24.1 h5888daf_0 conda-forge Cached + libltdl 2.4.3a h5888daf_0 conda-forge Cached + xorg-libxt 1.3.1 hb9d3cd8_0 conda-forge Cached + yaml 0.2.5 h7f98852_2 conda-forge Cached + libsodium 1.0.18 h36c2ea0_1 conda-forge Cached + fribidi 1.0.10 h36c2ea0_0 conda-forge Cached + xz 5.8.1 hbcc6ac9_2 conda-forge Cached + libasprintf-devel 0.24.1 h8e693c7_0 conda-forge Cached + libgettextpo-devel 0.24.1 h5888daf_0 conda-forge Cached + libtool 2.5.4 h5888daf_0 conda-forge Cached + zeromq 4.3.5 h59595ed_1 conda-forge Cached + libllvm11 11.1.0 he0ac6c6_5 conda-forge Cached + libllvm14 14.0.6 hcd5def8_4 conda-forge Cached + zlib 1.2.13 h4ab18f5_6 conda-forge Cached + gettext 0.24.1 h5888daf_0 conda-forge Cached + libclang 11.1.0 default_ha53f305_1 conda-forge Cached + mysql-common 8.0.32 h14678bc_0 conda-forge Cached + libevent 2.1.10 h9b69904_4 conda-forge Cached + xorg-libxpm 3.5.17 hb9d3cd8_1 conda-forge Cached + mysql-libs 8.0.32 h54cf53e_0 conda-forge Cached + sqlite 3.46.0 h6d4b2fc_0 conda-forge Cached + nss 3.100 hca3bf56_0 conda-forge Cached + boost-cpp 1.74.0 h312852a_4 conda-forge Cached + gstreamer 1.18.5 h76c114f_0 conda-forge Cached + glib-tools 2.68.4 h9c3ff4c_0 conda-forge Cached + gst-plugins-base 1.18.4 h29181c9_0 conda-forge Cached + pango 1.42.4 h69149e4_5 conda-forge Cached + graphviz 2.42.3 h0511662_0 conda-forge Cached + pysocks 1.7.1 pyha55dd90_7 conda-forge Cached + python-fastjsonschema 2.21.1 pyhd8ed1ab_0 conda-forge Cached + typing_utils 0.1.0 pyhd8ed1ab_1 conda-forge Cached + charset-normalizer 3.4.2 pyhd8ed1ab_0 conda-forge Cached + python-tzdata 2025.2 pyhd8ed1ab_0 conda-forge Cached + cached_property 1.5.2 pyha770c72_1 conda-forge Cached + types-python-dateutil 2.9.0.20250516 pyhd8ed1ab_0 conda-forge Cached + pytz 2025.2 pyhd8ed1ab_0 conda-forge Cached + soupsieve 2.7 pyhd8ed1ab_0 conda-forge Cached + webencodings 0.5.1 pyhd8ed1ab_3 conda-forge Cached + sniffio 1.3.1 pyhd8ed1ab_1 conda-forge Cached + hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge Cached + hpack 4.1.0 pyhd8ed1ab_0 conda-forge Cached + zipp 3.22.0 pyhd8ed1ab_0 conda-forge Cached + parso 0.8.4 pyhd8ed1ab_1 conda-forge Cached + attrs 25.3.0 pyh71513ae_0 conda-forge Cached + pkgutil-resolve-name 1.3.10 pyhd8ed1ab_2 conda-forge Cached + webcolors 24.11.1 pyhd8ed1ab_0 conda-forge Cached + uri-template 1.3.0 pyhd8ed1ab_1 conda-forge Cached + idna 3.10 pyhd8ed1ab_1 conda-forge Cached + platformdirs 4.3.8 pyhe01879c_0 conda-forge Cached + python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge Cached + websocket-client 1.8.0 pyhd8ed1ab_1 conda-forge Cached + send2trash 1.8.3 pyh0d859eb_1 conda-forge Cached + rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge Cached + prometheus_client 0.22.1 pyhd8ed1ab_0 conda-forge Cached + tomli 2.2.1 pyhd8ed1ab_1 conda-forge Cached + json5 0.12.0 pyhd8ed1ab_0 conda-forge Cached + pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge Cached + defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge Cached + ptyprocess 0.7.0 pyhd8ed1ab_1 conda-forge Cached + wcwidth 0.2.13 pyhd8ed1ab_1 conda-forge Cached + pure_eval 0.2.3 pyhd8ed1ab_1 conda-forge Cached + executing 2.2.0 pyhd8ed1ab_0 conda-forge Cached + asttokens 3.0.0 pyhd8ed1ab_1 conda-forge Cached + pycparser 2.22 pyh29332c3_1 conda-forge Cached + olefile 0.47 pyhd8ed1ab_1 conda-forge Cached + certifi 2025.4.26 pyhd8ed1ab_0 conda-forge Cached + threadpoolctl 3.6.0 pyhecae5ae_0 conda-forge Cached + joblib 1.5.1 pyhd8ed1ab_0 conda-forge Cached + nest-asyncio 1.6.0 pyhd8ed1ab_1 conda-forge Cached + pygments 2.19.1 pyhd8ed1ab_0 conda-forge Cached + typing_extensions 4.14.0 pyhe01879c_0 conda-forge Cached + pickleshare 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pyhd8ed1ab_0 conda-forge Cached + httpx 0.28.1 pyhd8ed1ab_0 conda-forge Cached + brotli-python 1.1.0 py39hf88036b_3 conda-forge Cached + greenlet 3.2.3 py39hf88036b_0 conda-forge Cached + rpds-py 0.25.1 py39h20260ba_0 conda-forge Cached + jsonpointer 3.0.0 py39hf3d152e_1 conda-forge Cached + pyyaml 6.0.2 py39h9399b63_2 conda-forge Cached + pycairo 1.25.0 py39hc92de75_1 conda-forge Cached + pyqt5-sip 4.19.18 py39he80948d_7 conda-forge Cached + debugpy 1.8.14 py39hf88036b_0 conda-forge Cached + pyzmq 26.2.0 py39h4e4fb57_1 conda-forge Cached + psutil 7.0.0 py39h8cd3c5a_0 conda-forge Cached + markupsafe 3.0.2 py39h9399b63_1 conda-forge Cached + openbabel 3.1.1 py39hee2736e_3 conda-forge Cached + cython 0.29.37 py39h3d6467e_0 conda-forge Cached + glib 2.68.4 h9c3ff4c_0 conda-forge Cached + pydot 4.0.0 py39hf3d152e_0 conda-forge Cached + cffi 1.14.6 py39he32792d_0 conda-forge Cached + sqlalchemy 2.0.41 py39h8cd3c5a_0 conda-forge Cached + pandas 2.3.0 py39h3b40f6f_0 conda-forge Cached + boost 1.74.0 py39h5472131_5 conda-forge Cached + scipy 1.13.1 py39haf93ffa_0 conda-forge Cached + lpsolve55 5.5 py39hf3d9206_1009 conda-forge Cached + zstandard 0.23.0 py39h8cd3c5a_2 conda-forge Cached + argon2-cffi-bindings 21.2.0 py39h8cd3c5a_5 conda-forge Cached + reportlab 3.5.68 py39he59360d_1 conda-forge Cached + scikit-learn 1.6.1 py39h4b7350c_0 conda-forge Cached + qt 5.12.9 hda022c4_4 conda-forge Cached + pyqt-impl 5.12.3 py39h0fcd23e_7 conda-forge Cached + rdkit 2022.09.1 py39h79face8_0 conda-forge Cached + pyqtwebengine 5.12.1 py39h0fcd23e_7 conda-forge Cached + pyqtchart 5.12 py39h0fcd23e_7 conda-forge Cached + pyqt 5.12.3 py39hf3d152e_7 conda-forge Cached + pyrdl 1.1.3 py39_0 mjohnson541 Cached + referencing 0.36.2 pyh29332c3_0 conda-forge Cached + jinja2 3.1.6 pyhd8ed1ab_0 conda-forge Cached + quantities 0.16.2 pyhd8ed1ab_0 conda-forge Cached + terminado 0.18.1 pyh0d859eb_0 conda-forge Cached + jupyter_client 8.6.3 pyhd8ed1ab_1 conda-forge Cached + cairocffi 1.7.1 pyhd8ed1ab_1 conda-forge Cached + urllib3 2.4.0 pyhd8ed1ab_0 conda-forge Cached + argon2-cffi 25.1.0 pyhd8ed1ab_0 conda-forge Cached + jsonschema-specifications 2025.4.1 pyh29332c3_0 conda-forge Cached + jupyter_server_terminals 0.5.3 pyhd8ed1ab_1 conda-forge Cached + ipykernel 6.29.5 pyh3099207_0 conda-forge Cached + requests 2.32.3 pyhd8ed1ab_1 conda-forge Cached + jsonschema 4.24.0 pyhd8ed1ab_0 conda-forge Cached + jupyter_console 6.6.3 pyhd8ed1ab_1 conda-forge Cached + jsonschema-with-format-nongpl 4.24.0 hd8ed1ab_0 conda-forge Cached + nbformat 5.10.4 pyhd8ed1ab_1 conda-forge Cached + jupyter_events 0.12.0 pyh29332c3_0 conda-forge Cached + nbclient 0.10.2 pyhd8ed1ab_0 conda-forge Cached + nbconvert-core 7.16.6 pyh29332c3_0 conda-forge Cached + jupyter_server 2.16.0 pyhe01879c_0 conda-forge Cached + jupyter-lsp 2.2.5 pyhe01879c_2 conda-forge Cached + jupyterlab_server 2.27.3 pyhd8ed1ab_1 conda-forge Cached + notebook-shim 0.2.4 pyhd8ed1ab_1 conda-forge Cached + jupyterlab 4.4.3 pyhd8ed1ab_0 conda-forge Cached + notebook 7.4.3 pyhd8ed1ab_0 conda-forge Cached + jupyter 1.1.1 pyhd8ed1ab_1 conda-forge Cached + rmgmolecule 0.3.0 py39h353cf5f_14 mjohnson541 Cached Remove: ─────────────────────────────────────────────────────────────────────────────────────────────── - pyside6 6.9.1 py312hdb827e4_0 conda-forge Cached - qt6-main 6.9.1 h0384650_0 conda-forge Cached - libfreetype 2.13.3 ha770c72_1 conda-forge Cached - libclang-cpp20.1 20.1.6 default_h1df26ce_0 conda-forge Cached - libfreetype6 2.13.3 h48d6fc4_1 conda-forge Cached - libllvm20 20.1.6 he9d0ab4_0 conda-forge Cached - wayland 1.23.1 h3e06ad9_1 conda-forge Cached Change: ─────────────────────────────────────────────────────────────────────────────────────────────── - tk 8.6.13 noxft_hd72426e_102 conda-forge Cached + tk 8.6.13 noxft_h4845f30_101 conda-forge Cached - libcups 2.3.3 h4637d8d_4 conda-forge Cached + libcups 2.3.3 h3e49a29_2 conda-forge Cached - cyrus-sasl 2.1.27 h54b06d7_7 conda-forge Cached + cyrus-sasl 2.1.27 h230043b_5 conda-forge Cached - tornado 6.5.1 py312h66e93f0_0 conda-forge Cached + tornado 6.5.1 py39h8cd3c5a_0 conda-forge Cached - unicodedata2 16.0.0 py312h66e93f0_0 conda-forge Cached + unicodedata2 16.0.0 py39h8cd3c5a_0 conda-forge Cached - fonttools 4.58.2 py312h178313f_0 conda-forge Cached + fonttools 4.58.2 py39h9399b63_0 conda-forge Cached Reinstall: ─────────────────────────────────────────────────────────────────────────────────────────────── o wheel 0.45.1 pyhd8ed1ab_1 conda-forge Cached o setuptools 80.9.0 pyhff2d567_0 conda-forge Cached o pip 25.1.1 pyh8b19718_0 conda-forge Cached o six 1.17.0 pyhd8ed1ab_0 conda-forge Cached o pyparsing 3.2.3 pyhd8ed1ab_1 conda-forge Cached o packaging 25.0 pyh29332c3_1 conda-forge Cached o munkres 1.1.4 pyh9f0ad1d_0 conda-forge Cached o cycler 0.12.1 pyhd8ed1ab_1 conda-forge Cached o python-dateutil 2.9.0.post0 pyhff2d567_1 conda-forge Cached Downgrade: ─────────────────────────────────────────────────────────────────────────────────────────────── - openssl 3.5.0 h7b32b05_1 conda-forge Cached + openssl 1.1.1w hd590300_0 conda-forge Cached - krb5 1.21.3 h659f571_0 conda-forge Cached + krb5 1.19.3 h3790be6_0 conda-forge Cached - libzlib 1.3.1 hb9d3cd8_2 conda-forge Cached + libzlib 1.2.13 h4ab18f5_6 conda-forge Cached - zstd 1.5.7 hb8e6e7a_2 conda-forge Cached + zstd 1.5.6 ha6fb4c9_0 conda-forge Cached - pcre2 10.45 hc749103_0 conda-forge Cached + pcre2 10.43 hcad00b1_0 conda-forge Cached - libsqlite 3.50.1 hee588c1_0 conda-forge Cached + libsqlite 3.46.0 hde9e2c9_0 conda-forge Cached - libpq 17.5 h27ae623_0 conda-forge Cached + libpq 13.8 hd77ab85_0 conda-forge Cached - libpng 1.6.47 h943b412_0 conda-forge Cached + libpng 1.6.43 h2797004_0 conda-forge Cached - libjpeg-turbo 3.1.0 hb9d3cd8_0 conda-forge Cached + libjpeg-turbo 2.1.4 h166bdaf_0 conda-forge Cached - libclang13 20.1.6 default_he06ed0a_0 conda-forge Cached + libclang13 14.0.6 default_h9986a30_1 conda-forge Cached - icu 75.1 he02047a_0 conda-forge Cached + icu 68.2 h9c3ff4c_0 conda-forge Cached - libffi 3.4.6 h2dba641_1 conda-forge Cached + libffi 3.3 h58526e2_2 conda-forge Cached - libtiff 4.7.0 hf01ce69_5 conda-forge Cached + libtiff 4.2.0 hf544144_3 conda-forge Cached - freetype 2.13.3 ha770c72_1 conda-forge Cached + freetype 2.12.1 h267a509_2 conda-forge Cached - libxml2 2.13.8 h4bc477f_0 conda-forge Cached + libxml2 2.9.12 h72842e0_0 conda-forge Cached - openldap 2.6.10 he970967_0 conda-forge Cached + openldap 2.6.3 h2cfb03e_1 conda-forge Cached - libglib 2.84.2 h3618099_0 conda-forge Cached + libglib 2.68.4 h3e27bee_0 conda-forge Cached - openjpeg 2.5.3 h5fbd93e_0 conda-forge Cached + openjpeg 2.4.0 hb52868f_1 conda-forge Cached - lcms2 2.17 h717163a_0 conda-forge Cached + lcms2 2.12 hddcbb42_0 conda-forge Cached - python 3.12.11 h9e4cc4f_0_cpython conda-forge Cached + python 3.9.0 hffdb5ce_5_cpython conda-forge Cached - fontconfig 2.15.0 h7e30c49_1 conda-forge Cached + fontconfig 2.14.2 h14ed4e7_0 conda-forge Cached - libxkbcommon 1.10.0 h65c71a3_0 conda-forge Cached + libxkbcommon 1.0.3 he3ba5ed_0 conda-forge Cached - cairo 1.18.4 h3394656_0 conda-forge Cached + cairo 1.16.0 h6cf1ce9_1008 conda-forge Cached - harfbuzz 11.2.1 h3beb420_0 conda-forge Cached + harfbuzz 2.9.1 h83ec7ef_1 conda-forge Cached - python_abi 3.12 7_cp312 conda-forge Cached + python_abi 3.9 7_cp39 conda-forge Cached - numpy 2.2.6 py312h72c5963_0 conda-forge Cached + numpy 1.26.4 py39h474f0d3_0 conda-forge Cached - kiwisolver 1.4.8 py312h84d6215_0 conda-forge Cached + kiwisolver 1.4.7 py39h74842e3_0 conda-forge Cached - pillow 11.2.1 py312h80c1187_0 conda-forge Cached + pillow 8.2.0 py39hf95b381_1 conda-forge Cached - contourpy 1.3.2 py312h68727a3_0 conda-forge Cached + contourpy 1.3.0 py39h74842e3_2 conda-forge Cached - dbus 1.16.2 h3c4dab8_0 conda-forge Cached + dbus 1.13.6 h48d8840_2 conda-forge Cached - matplotlib-base 3.10.3 py312hd3ec401_0 conda-forge Cached + matplotlib-base 3.9.1 py39h0565ad7_2 conda-forge Cached - matplotlib 3.10.3 py312h7900ff3_0 conda-forge Cached + matplotlib 3.9.1 py39hf3d152e_1 conda-forge Cached Summary: Install: 180 packages Remove: 7 packages Change: 6 packages Reinstall: 9 packages Downgrade: 32 packages Total download: 0 B ─────────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Unlinking pyside6-6.9.1-py312hdb827e4_0 Unlinking qt6-main-6.9.1-h0384650_0 Unlinking libfreetype-2.13.3-ha770c72_1 Unlinking libclang-cpp20.1-20.1.6-default_h1df26ce_0 Unlinking libfreetype6-2.13.3-h48d6fc4_1 Unlinking libllvm20-20.1.6-he9d0ab4_0 Linking pcre-8.45-h9c3ff4c_0 Linking expat-2.7.0-h5888daf_0 Linking liblzma-devel-5.8.1-hb9d3cd8_2 Linking xz-gpl-tools-5.8.1-hbcc6ac9_2 Linking xz-tools-5.8.1-hb9d3cd8_2 Linking lp_solve-5.5.2.11-hd590300_0 Linking jpeg-9e-h166bdaf_2 warning libmamba [jpeg-9e-h166bdaf_2] The following files were already present in the environment: - bin/cjpeg - bin/djpeg - bin/jpegtran - bin/rdjpgcom - bin/wrjpgcom - include/jconfig.h - include/jerror.h - include/jmorecfg.h - include/jpeglib.h - lib/libjpeg.a - lib/libjpeg.so - lib/pkgconfig/libjpeg.pc - share/man/man1/cjpeg.1 - share/man/man1/djpeg.1 - share/man/man1/jpegtran.1 - share/man/man1/rdjpgcom.1 - share/man/man1/wrjpgcom.1 Linking nspr-4.36-h5888daf_0 Linking gettext-tools-0.24.1-h5888daf_0 Linking libasprintf-0.24.1-h8e693c7_0 Linking libgettextpo-0.24.1-h5888daf_0 Linking libltdl-2.4.3a-h5888daf_0 Linking xorg-libxt-1.3.1-hb9d3cd8_0 Linking yaml-0.2.5-h7f98852_2 Linking libsodium-1.0.18-h36c2ea0_1 Linking fribidi-1.0.10-h36c2ea0_0 Changing openssl-3.5.0-h7b32b05_1 ==> openssl-1.1.1w-hd590300_0 Changing krb5-1.21.3-h659f571_0 ==> krb5-1.19.3-h3790be6_0 Changing libzlib-1.3.1-hb9d3cd8_2 ==> libzlib-1.2.13-h4ab18f5_6 Linking xz-5.8.1-hbcc6ac9_2 Linking libasprintf-devel-0.24.1-h8e693c7_0 Linking libgettextpo-devel-0.24.1-h5888daf_0 Linking libtool-2.5.4-h5888daf_0 Linking zeromq-4.3.5-h59595ed_1 Linking libllvm11-11.1.0-he0ac6c6_5 Linking libllvm14-14.0.6-hcd5def8_4 Changing tk-8.6.13-noxft_hd72426e_102 ==> tk-8.6.13-noxft_h4845f30_101 Linking zlib-1.2.13-h4ab18f5_6 Changing libcups-2.3.3-h4637d8d_4 ==> libcups-2.3.3-h3e49a29_2 Unlinking wayland-1.23.1-h3e06ad9_1 Linking gettext-0.24.1-h5888daf_0 Linking libclang-11.1.0-default_ha53f305_1 Linking mysql-common-8.0.32-h14678bc_0 Linking libevent-2.1.10-h9b69904_4 Changing zstd-1.5.7-hb8e6e7a_2 ==> zstd-1.5.6-ha6fb4c9_0 Changing pcre2-10.45-hc749103_0 ==> pcre2-10.43-hcad00b1_0 Changing libsqlite-3.50.1-hee588c1_0 ==> libsqlite-3.46.0-hde9e2c9_0 Changing libpq-17.5-h27ae623_0 ==> libpq-13.8-hd77ab85_0 Changing libpng-1.6.47-h943b412_0 ==> libpng-1.6.43-h2797004_0 Changing libjpeg-turbo-3.1.0-hb9d3cd8_0 ==> libjpeg-turbo-2.1.4-h166bdaf_0 Changing libclang13-20.1.6-default_he06ed0a_0 ==> libclang13-14.0.6-default_h9986a30_1 Changing icu-75.1-he02047a_0 ==> icu-68.2-h9c3ff4c_0 Changing cyrus-sasl-2.1.27-h54b06d7_7 ==> cyrus-sasl-2.1.27-h230043b_5 Changing libffi-3.4.6-h2dba641_1 ==> libffi-3.3-h58526e2_2 Linking xorg-libxpm-3.5.17-hb9d3cd8_1 Linking mysql-libs-8.0.32-h54cf53e_0 Changing libtiff-4.7.0-hf01ce69_5 ==> libtiff-4.2.0-hf544144_3 Linking sqlite-3.46.0-h6d4b2fc_0 Linking nss-3.100-hca3bf56_0 Changing freetype-2.13.3-ha770c72_1 ==> freetype-2.12.1-h267a509_2 Linking boost-cpp-1.74.0-h312852a_4 Changing libxml2-2.13.8-h4bc477f_0 ==> libxml2-2.9.12-h72842e0_0 Changing openldap-2.6.10-he970967_0 ==> openldap-2.6.3-h2cfb03e_1 Changing libglib-2.84.2-h3618099_0 ==> libglib-2.68.4-h3e27bee_0 Changing openjpeg-2.5.3-h5fbd93e_0 ==> openjpeg-2.4.0-hb52868f_1 Changing lcms2-2.17-h717163a_0 ==> lcms2-2.12-hddcbb42_0 Changing python-3.12.11-h9e4cc4f_0_cpython ==> python-3.9.0-hffdb5ce_5_cpython Changing fontconfig-2.15.0-h7e30c49_1 ==> fontconfig-2.14.2-h14ed4e7_0 Changing libxkbcommon-1.10.0-h65c71a3_0 ==> libxkbcommon-1.0.3-he3ba5ed_0 Linking gstreamer-1.18.5-h76c114f_0 Linking glib-tools-2.68.4-h9c3ff4c_0 Changing cairo-1.18.4-h3394656_0 ==> cairo-1.16.0-h6cf1ce9_1008 Linking gst-plugins-base-1.18.4-h29181c9_0 Changing harfbuzz-11.2.1-h3beb420_0 ==> harfbuzz-2.9.1-h83ec7ef_1 Linking pango-1.42.4-h69149e4_5 Linking graphviz-2.42.3-h0511662_0 Changing python_abi-3.12-7_cp312 ==> python_abi-3.9-7_cp39 Reinstalling wheel-0.45.1-pyhd8ed1ab_1 Reinstalling setuptools-80.9.0-pyhff2d567_0 Reinstalling pip-25.1.1-pyh8b19718_0 Reinstalling six-1.17.0-pyhd8ed1ab_0 Reinstalling pyparsing-3.2.3-pyhd8ed1ab_1 Reinstalling packaging-25.0-pyh29332c3_1 Reinstalling munkres-1.1.4-pyh9f0ad1d_0 Reinstalling cycler-0.12.1-pyhd8ed1ab_1 Linking pysocks-1.7.1-pyha55dd90_7 Linking python-fastjsonschema-2.21.1-pyhd8ed1ab_0 Linking typing_utils-0.1.0-pyhd8ed1ab_1 Linking charset-normalizer-3.4.2-pyhd8ed1ab_0 Linking python-tzdata-2025.2-pyhd8ed1ab_0 Linking cached_property-1.5.2-pyha770c72_1 Linking types-python-dateutil-2.9.0.20250516-pyhd8ed1ab_0 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executing-2.2.0-pyhd8ed1ab_0 Linking asttokens-3.0.0-pyhd8ed1ab_1 Linking pycparser-2.22-pyh29332c3_1 Linking olefile-0.47-pyhd8ed1ab_1 Linking certifi-2025.4.26-pyhd8ed1ab_0 Linking threadpoolctl-3.6.0-pyhecae5ae_0 Linking joblib-1.5.1-pyhd8ed1ab_0 Linking nest-asyncio-1.6.0-pyhd8ed1ab_1 Linking pygments-2.19.1-pyhd8ed1ab_0 Linking typing_extensions-4.14.0-pyhe01879c_0 Linking pickleshare-0.7.5-pyhd8ed1ab_1004 Linking decorator-5.2.1-pyhd8ed1ab_0 Linking traitlets-5.14.3-pyhd8ed1ab_1 Linking widgetsnbextension-4.0.14-pyhd8ed1ab_0 Linking jupyterlab_widgets-3.0.15-pyhd8ed1ab_0 Linking gprof2dot-2024.6.6-pyhd8ed1ab_1 Reinstalling python-dateutil-2.9.0.post0-pyhff2d567_1 Linking rfc3339-validator-0.1.4-pyhd8ed1ab_1 Linking overrides-7.7.0-pyhd8ed1ab_1 Linking cached-property-1.5.2-hd8ed1ab_1 Linking babel-2.17.0-pyhd8ed1ab_0 Linking tinycss2-1.4.0-pyhd8ed1ab_0 Linking bleach-6.2.0-pyh29332c3_4 Linking h2-4.2.0-pyhd8ed1ab_0 Linking importlib-metadata-8.7.0-pyhe01879c_1 Linking 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Linking brotli-python-1.1.0-py39hf88036b_3 Linking greenlet-3.2.3-py39hf88036b_0 Linking rpds-py-0.25.1-py39h20260ba_0 Linking jsonpointer-3.0.0-py39hf3d152e_1 Linking pyyaml-6.0.2-py39h9399b63_2 Linking pycairo-1.25.0-py39hc92de75_1 Linking pyqt5-sip-4.19.18-py39he80948d_7 Linking debugpy-1.8.14-py39hf88036b_0 Linking pyzmq-26.2.0-py39h4e4fb57_1 Linking psutil-7.0.0-py39h8cd3c5a_0 Linking markupsafe-3.0.2-py39h9399b63_1 Linking openbabel-3.1.1-py39hee2736e_3 Linking cython-0.29.37-py39h3d6467e_0 Changing numpy-2.2.6-py312h72c5963_0 ==> numpy-1.26.4-py39h474f0d3_0 Changing kiwisolver-1.4.8-py312h84d6215_0 ==> kiwisolver-1.4.7-py39h74842e3_0 Linking glib-2.68.4-h9c3ff4c_0 Changing tornado-6.5.1-py312h66e93f0_0 ==> tornado-6.5.1-py39h8cd3c5a_0 Changing unicodedata2-16.0.0-py312h66e93f0_0 ==> unicodedata2-16.0.0-py39h8cd3c5a_0 Linking pydot-4.0.0-py39hf3d152e_0 Linking cffi-1.14.6-py39he32792d_0 Changing pillow-11.2.1-py312h80c1187_0 ==> pillow-8.2.0-py39hf95b381_1 Linking sqlalchemy-2.0.41-py39h8cd3c5a_0 Linking pandas-2.3.0-py39h3b40f6f_0 Linking boost-1.74.0-py39h5472131_5 Linking scipy-1.13.1-py39haf93ffa_0 Linking lpsolve55-5.5-py39hf3d9206_1009 Changing contourpy-1.3.2-py312h68727a3_0 ==> contourpy-1.3.0-py39h74842e3_2 Changing dbus-1.16.2-h3c4dab8_0 ==> dbus-1.13.6-h48d8840_2 Changing fonttools-4.58.2-py312h178313f_0 ==> fonttools-4.58.2-py39h9399b63_0 Linking zstandard-0.23.0-py39h8cd3c5a_2 Linking argon2-cffi-bindings-21.2.0-py39h8cd3c5a_5 Linking reportlab-3.5.68-py39he59360d_1 Linking scikit-learn-1.6.1-py39h4b7350c_0 Linking qt-5.12.9-hda022c4_4 Changing matplotlib-base-3.10.3-py312hd3ec401_0 ==> matplotlib-base-3.9.1-py39h0565ad7_2 Linking pyqt-impl-5.12.3-py39h0fcd23e_7 Linking rdkit-2022.09.1-py39h79face8_0 Linking pyqtwebengine-5.12.1-py39h0fcd23e_7 Linking pyqtchart-5.12-py39h0fcd23e_7 Linking pyqt-5.12.3-py39hf3d152e_7 Changing matplotlib-3.10.3-py312h7900ff3_0 ==> matplotlib-3.9.1-py39hf3d152e_1 Linking pyrdl-1.1.3-py39_0 Linking referencing-0.36.2-pyh29332c3_0 Linking jinja2-3.1.6-pyhd8ed1ab_0 Linking quantities-0.16.2-pyhd8ed1ab_0 Linking terminado-0.18.1-pyh0d859eb_0 Linking jupyter_client-8.6.3-pyhd8ed1ab_1 Linking cairocffi-1.7.1-pyhd8ed1ab_1 Linking urllib3-2.4.0-pyhd8ed1ab_0 Linking argon2-cffi-25.1.0-pyhd8ed1ab_0 Linking jsonschema-specifications-2025.4.1-pyh29332c3_0 Linking jupyter_server_terminals-0.5.3-pyhd8ed1ab_1 Linking ipykernel-6.29.5-pyh3099207_0 Linking requests-2.32.3-pyhd8ed1ab_1 Linking jsonschema-4.24.0-pyhd8ed1ab_0 Linking jupyter_console-6.6.3-pyhd8ed1ab_1 Linking jsonschema-with-format-nongpl-4.24.0-hd8ed1ab_0 Linking nbformat-5.10.4-pyhd8ed1ab_1 Linking jupyter_events-0.12.0-pyh29332c3_0 Linking nbclient-0.10.2-pyhd8ed1ab_0 Linking nbconvert-core-7.16.6-pyh29332c3_0 Linking jupyter_server-2.16.0-pyhe01879c_0 Linking jupyter-lsp-2.2.5-pyhe01879c_2 Linking jupyterlab_server-2.27.3-pyhd8ed1ab_1 Linking notebook-shim-0.2.4-pyhd8ed1ab_1 Linking jupyterlab-4.4.3-pyhd8ed1ab_0 Linking notebook-7.4.3-pyhd8ed1ab_0 Linking jupyter-1.1.1-pyhd8ed1ab_1 Linking rmgmolecule-0.3.0-py39h353cf5f_14 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74802.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x7dcc48e5c730) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x7dcc48e55025) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x7dcc48e54b10) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x7dcc48e543d0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x7dcc48e50ac9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7dcc49c3d249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007dcc3c600010 Total snapshots: 392. Utilization: 0% ╎392 @Base/client.jl:557; _start() ╎ 392 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 392 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 392 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _pat… ╎ 392 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mo… ╎ 392 @Base/boot.jl:385; eval ╎ ╎ 392 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 392 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 392 @Pkg/src/API.jl:147; test ╎ ╎ 392 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 392 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 392 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec… ╎ ╎ ╎ 392 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 392 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 392 …rc/Operations.jl:1915; test ╎ ╎ ╎ 392 …rc/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 392 …c/Operations.jl:1759; kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 392 …c/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.… ╎ ╎ ╎ ╎ 392 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 392 @Base/file.jl:762; mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 392 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 392 …Operations.jl:1810; (::Pkg.Operations.var"#115#12… ╎ ╎ ╎ ╎ ╎ 392 …Operations.jl:1721; with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 392 …Operations.jl:1840; (::Pkg.Operations.var"#117#… ╎ ╎ ╎ ╎ ╎ 392 @Base/env.jl:257; withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 392 …perations.jl:1992; (::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ ╎ 392 …erations.jl:2048; subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 392 …/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 392 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 392 …ondition.jl:130; wait(c::Base.GenericCond… ╎ ╎ ╎ ╎ ╎ ╎ 392 …ase/task.jl:1008; wait() 391╎ ╎ ╎ ╎ ╎ ╎ ╎ 392 …ase/task.jl:999; poptask(W::Base.Intrus… [2477] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/ReactionMechanismSimulator/EureN/src/rmstest.jl:8 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 poptask at ./task.jl:999 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 wait at ./task.jl:1008 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 #wait#647 at ./condition.jl:130 #1058 at ./Base.jl:608 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_YY.1058_85318.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 15386884 (Pool: 15350093; Big: 36791); GC: 13 success at ./process.jl:523 [inlined] #run#800 at ./process.jl:480 run at ./process.jl:477 unknown function (ip: 0x7ca7b77ef6f5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #_run#63 at /home/pkgeval/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:715 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 _run at /home/pkgeval/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:709 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #_resolve_conda_install#53 at /home/pkgeval/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:594 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _resolve_conda_install at /home/pkgeval/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:564 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #resolve#64 at /home/pkgeval/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:910 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 resolve at /home/pkgeval/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:718 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7ca7b777e125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7ca7b777e125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 PkgEval terminated after 2423.53s: tests became inactive