Package evaluation of QSM on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T17:51:05.513 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.45s ################################################################################ # Installation # Installing QSM... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [794fc106] + QSM v0.5.4 Updating `~/.julia/environments/v1.10/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 ⌅ [4fba245c] + ArrayInterface v6.0.25 [30b0a656] + ArrayInterfaceCore v0.1.29 [015c0d05] + ArrayInterfaceOffsetArrays v0.1.7 [b0d46f97] + ArrayInterfaceStaticArrays v0.1.5 [dd5226c6] + ArrayInterfaceStaticArraysCore v0.1.4 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 ⌃ [fb6a15b2] + CloseOpenIntervals v0.1.11 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 ⌅ [717857b8] + DSP v0.7.10 [ffbed154] + DocStringExtensions v0.9.4 [7a1cc6ca] + FFTW v1.9.0 [c0e83750] + FastPow v0.1.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 ⌃ [10f19ff3] + LayoutPointers v0.1.13 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [a3a9e032] + NIfTI v0.6.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 ⌃ [f517fe37] + Polyester v0.7.2 [1d0040c9] + PolyesterWeave v0.2.2 [f27b6e38] + Polynomials v4.0.19 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [794fc106] + QSM v0.5.4 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [efcf1570] + Setfield v1.1.2 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.5.1 ⌅ [aedffcd0] + Static v0.8.10 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 ⌅ [7792a7ef] + StrideArraysCore v0.4.7 [8290d209] + ThreadingUtilities v0.5.4 ⌅ [06e1c1a7] + TiledIteration v0.4.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 ⌃ [3d5dd08c] + VectorizationBase v0.21.58 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 77.85s ################################################################################ # Testing # Testing QSM Status `/tmp/jl_U9VmTq/Project.toml` [4c88cf16] Aqua v0.8.13 ⌅ [717857b8] DSP v0.7.10 [7a1cc6ca] FFTW v1.9.0 [794fc106] QSM v0.5.4 [37e2e46d] LinearAlgebra [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_U9VmTq/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [79e6a3ab] Adapt v3.7.2 [4c88cf16] Aqua v0.8.13 ⌅ [4fba245c] ArrayInterface v6.0.25 [30b0a656] ArrayInterfaceCore v0.1.29 [015c0d05] ArrayInterfaceOffsetArrays v0.1.7 [b0d46f97] ArrayInterfaceStaticArrays v0.1.5 [dd5226c6] ArrayInterfaceStaticArraysCore v0.1.4 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 ⌃ [fb6a15b2] CloseOpenIntervals v0.1.11 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 ⌅ [717857b8] DSP v0.7.10 [ffbed154] DocStringExtensions v0.9.4 [7a1cc6ca] FFTW v1.9.0 [c0e83750] FastPow v0.1.0 [3e5b6fbb] HostCPUFeatures v0.1.17 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.0 ⌃ [10f19ff3] LayoutPointers v0.1.13 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [a3a9e032] NIfTI v0.6.1 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 ⌃ [f517fe37] Polyester v0.7.2 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.0.19 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [794fc106] QSM v0.5.4 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [efcf1570] Setfield v1.1.2 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.5.1 ⌅ [aedffcd0] Static v0.8.10 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 ⌅ [7792a7ef] StrideArraysCore v0.4.7 [8290d209] ThreadingUtilities v0.5.4 ⌅ [06e1c1a7] TiledIteration v0.4.2 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 ⌃ [3d5dd08c] VectorizationBase v0.21.58 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition boundscheck() in module StrideArraysCore at /home/pkgeval/.julia/packages/StrideArraysCore/lUhTe/src/ptr_array.jl:886 overwritten at /home/pkgeval/.julia/packages/StrideArraysCore/lUhTe/src/StrideArraysCore.jl:72. ERROR: LoadError: InitError: MethodError: no method matching getindex(::typeof(FFTW.libfftw3)) Stacktrace: [1] fftw_set_threading @ ~/.julia/packages/QSM/YNdHY/src/QSM.jl:109 [inlined] [2] __init__() @ QSM ~/.julia/packages/QSM/YNdHY/src/QSM.jl:51 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1193 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1181 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1126 [6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1651 [7] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2008 [8] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [9] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [10] invoke_in_world @ ./essentials.jl:923 [inlined] [11] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [12] macro expansion @ ./loading.jl:1860 [inlined] [13] macro expansion @ ./lock.jl:267 [inlined] [14] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [15] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [16] invoke_in_world @ ./essentials.jl:923 [inlined] [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [18] include(fname::String) @ Base.MainInclude ./client.jl:494 [19] top-level scope @ none:6 during initialization of module QSM in expression starting at /home/pkgeval/.julia/packages/QSM/YNdHY/test/runtests.jl:5 Testing failed after 18.98s ERROR: LoadError: Package QSM errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 122.3s: package tests unexpectedly errored