Package evaluation of PhyloGaussianBeliefProp on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T21:11:23.577 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.56s ################################################################################ # Installation # Installing PhyloGaussianBeliefProp... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [e3084505] + PhyloGaussianBeliefProp v0.0.1 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.4.1 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.13 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [fa8bd995] + MetaGraphsNext v0.7.3 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [76087f3c] + NLopt v1.1.4 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [e3084505] + PhyloGaussianBeliefProp v0.0.1 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.27 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [fdea26ae] + SIMD v3.7.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.56s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 222.45s ################################################################################ # Testing # Testing PhyloGaussianBeliefProp Status `/tmp/jl_r8Xjby/Project.toml` [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [86223c79] Graphs v1.13.0 [fa8bd995] MetaGraphsNext v0.7.3 [429524aa] Optim v1.12.0 [90014a1f] PDMats v0.11.35 [e3084505] PhyloGaussianBeliefProp v0.0.1 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [d236fae5] PreallocationTools v0.4.27 [90137ffa] StaticArrays v1.9.13 [4c63d2b9] StatsFuns v1.5.0 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra [8dfed614] Test Status `/tmp/jl_r8Xjby/Manifest.toml` [47edcb42] ADTypes v1.14.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [67c07d97] Automa v1.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.4.1 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [d9f16b24] Functors v0.4.12 [38e38edf] GLM v1.9.0 [86223c79] Graphs v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.13 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [fa8bd995] MetaGraphsNext v0.7.3 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.9.1 [76087f3c] NLopt v1.1.4 [77ba4419] NaNMath v1.1.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e3084505] PhyloGaussianBeliefProp v0.0.1 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.27 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [fdea26ae] SIMD v3.7.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [354b36f9] StringViews v1.3.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 Instruction does not dominate all uses! %107 = call token (...) @llvm.julia.gc_preserve_begin({} addrspace(10)* nonnull %getfield229), !dbg !207 call void @llvm.julia.gc_preserve_end(token %107), !dbg !207 julia: /source/src/llvm-alloc-opt.cpp:1265: bool {anonymous}::AllocOpt::runOnFunction(llvm::Function&, llvm::function_ref): Assertion `!verifyFunction(F, &errs())' failed. [67] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_calibration.jl:1 unknown function (ip: 0x7dfd626faebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7dfd62696394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) runOnFunction at /source/src/llvm-alloc-opt.cpp:1265 run at /source/src/llvm-alloc-opt.cpp:1306 run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/src/pipeline.cpp:751 operator() at /source/src/jitlayers.cpp:1257 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&):: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1222 [inlined] CallImpl<(anonymous namespace)::OptimizerT> at /source/usr/include/llvm/ADT/FunctionExtras.h:222 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) emit at /source/src/jitlayers.cpp:724 _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession12dispatchTaskESt10unique_ptrINS0_4TaskESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1604 jl_add_to_ee at /source/src/jitlayers.cpp:2015 _jl_compile_codeinst at /source/src/jitlayers.cpp:276 jl_generate_fptr_impl at /source/src/jitlayers.cpp:528 jl_compile_method_internal at /source/src/gf.c:2481 [inlined] jl_compile_method_internal at /source/src/gf.c:2368 _jl_invoke at /source/src/gf.c:2887 [inlined] ijl_apply_generic at /source/src/gf.c:3077 propagate_belief! at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefupdates.jl:203 unknown function (ip: 0x7dfd47829d65) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 propagate_1traversal_postorder! at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/calibration.jl:113 propagate_1traversal_postorder! at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/calibration.jl:106 unknown function (ip: 0x7dfd478293b9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 score at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/calibration.jl:229 vector_mode_dual_eval! at /home/pkgeval/.julia/packages/ForwardDiff/UBbGT/src/apiutils.jl:24 [inlined] vector_mode_gradient! at /home/pkgeval/.julia/packages/ForwardDiff/UBbGT/src/gradient.jl:98 gradient! at /home/pkgeval/.julia/packages/ForwardDiff/UBbGT/src/gradient.jl:39 [inlined] value_and_gradient! at /home/pkgeval/.julia/packages/DifferentiationInterface/zJHX8/ext/DifferentiationInterfaceForwardDiffExt/onearg.jl:396 [inlined] fg! at /home/pkgeval/.julia/packages/NLSolversBase/totsP/src/objective_types/oncedifferentiable.jl:53 unknown function (ip: 0x7dfd479b8afc) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 value_gradient!! at /home/pkgeval/.julia/packages/NLSolversBase/totsP/src/interface.jl:82 initial_state at /home/pkgeval/.julia/packages/Optim/8dE7C/src/multivariate/solvers/first_order/l_bfgs.jl:168 optimize at /home/pkgeval/.julia/packages/Optim/8dE7C/src/multivariate/optimize/optimize.jl:43 [inlined] optimize at /home/pkgeval/.julia/packages/Optim/8dE7C/src/multivariate/optimize/optimize.jl:43 unknown function (ip: 0x7dfd479b02f0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 calibrate_optimize_cliquetree_autodiff! at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/calibration.jl:235 unknown function (ip: 0x7dfd479b0015) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7dfd617ff125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7dfd617ff125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7dfd62697249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 141168404 (Pool: 141004563; Big: 163841); GC: 152 Testing failed after 495.74s ERROR: LoadError: Package PhyloGaussianBeliefProp errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 738.32s: the process was aborted