Package evaluation of Pfam on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T13:24:59.573


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 4.95s


################################################################################
# Installation
#

Installing Pfam...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [275cd14a] + Pfam v2.2.0
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [692b3bcd] + JLLWrappers v1.7.0
  [275cd14a] + Pfam v2.2.0
  [21216c6a] + Preferences v1.4.3
  [92933f4c] + ProgressMeter v1.10.4
  [be1be57a] + Gzip_jll v1.14.0+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [b27032c2] + LibCURL v0.6.4
  [8f399da3] + Libdl
  [ca575930] + NetworkOptions v1.2.0
  [de0858da] + Printf
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode
  [deac9b47] + LibCURL_jll v8.4.0+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850ede] + nghttp2_jll v1.52.0+1

Installation completed after 6.92s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 12.5s


################################################################################
# Testing
#

     Testing Pfam
      Status `/tmp/jl_BjnhZU/Project.toml`
⌅ [4c88cf16] Aqua v0.7.4
  [275cd14a] Pfam v2.2.0
  [8dfed614] Test
      Status `/tmp/jl_BjnhZU/Manifest.toml`
⌅ [4c88cf16] Aqua v0.7.4
  [34da2185] Compat v4.16.0
  [692b3bcd] JLLWrappers v1.7.0
  [275cd14a] Pfam v2.2.0
  [21216c6a] Preferences v1.4.3
  [92933f4c] ProgressMeter v1.10.4
  [be1be57a] Gzip_jll v1.14.0+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [56ddb016] Logging
  [d6f4376e] Markdown
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [83775a58] Zlib_jll v1.2.13+1
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Skipping Base.active_repl
Skipping Base.active_repl_backend
Test Summary:                                | Pass  Total   Time
aqua                                         |    9      9  19.3s
  Method ambiguity                           |    1      1   4.2s
  Unbound type parameters                    |    1      1   0.2s
  Undefined exports                          |    1      1   0.0s
  Compare Project.toml and test/Project.toml |    1      1   0.3s
  Stale dependencies                         |    1      1   3.8s
  Compat bounds                              |    1      1   1.0s
  Project.toml formatting                    |    2      2   0.7s
  Piracy                                     |    1      1   0.3s
[ Info: PFAM directory /tmp/jl_zdD0qz set.
[ Info: Pfam version 35.0 set.
[ Info: Downloading to /tmp/jl_zdD0qz/35.0/pdbmap ...

Downloaded (bytes): 0    Time: 0:00:04
Downloaded (bytes): 0    Time: 0:00:04
Downloaded (bytes): 0    Time: 0:00:04
Downloaded (bytes): 0    Time: 0:00:05
Downloaded (bytes): 7750    Time: 0:00:05
Downloaded (bytes): 207750    Time: 0:00:05
Downloaded (bytes): 903750    Time: 0:00:05
Downloaded (bytes): 2623750    Time: 0:00:05[ Info: Downloading to /tmp/jl_zdD0qz/alignment_files/PF00013.alignment.full.stk ...

Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 2236    Time: 0:00:01
Downloaded (bytes): 53080    Time: 0:00:01
Downloaded (bytes): 247438    Time: 0:00:02
Downloaded (bytes): 968818    Time: 0:00:02
Downloaded (bytes): 1591828    Time: 0:00:02
Downloaded (bytes): 2427961    Time: 0:00:02     Testing Pfam tests passed 

Testing completed after 36.19s

PkgEval succeeded after 67.19s