Package evaluation of Oceananigans on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T22:01:45.600 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.5s ################################################################################ # Installation # Installing Oceananigans... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [9e8cae18] + Oceananigans v0.96.31 Updating `~/.julia/environments/v1.10/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 ⌅ [ec485272] + ArnoldiMethod v0.1.0 [a9b6321e] + Atomix v1.1.1 [ab4f0b2a] + BFloat16s v0.5.1 [fa961155] + CEnum v0.5.0 [052768ef] + CUDA v5.8.2 [1af6417a] + CUDA_Runtime_Discovery v0.3.5 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.16.0 [a216cea6] + CompoundPeriods v0.5.4 [187b0558] + ConstructionBase v1.5.8 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.2 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [e2ba6199] + ExprTools v0.1.10 [21656369] + ExpressionExplorer v1.1.3 [7a1cc6ca] + FFTW v1.9.0 [5789e2e9] + FileIO v1.17.0 [53c48c17] + FixedPointNumbers v0.8.5 [0c68f7d7] + GPUArrays v11.2.2 [46192b85] + GPUArraysCore v0.2.0 [61eb1bfa] + GPUCompiler v1.5.1 [096a3bc2] + GPUToolbox v0.2.0 [c27321d9] + Glob v1.3.1 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.13 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.34 [ba0b0d4f] + Krylov v0.10.1 [45d422c2] + KrylovPreconditioners v0.3.4 [929cbde3] + LLVM v9.4.0 [8b046642] + LLVMLoopInfo v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [093fc24a] + LightGraphs v1.3.5 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [2679e427] + Metis v1.5.0 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [46d2c3a1] + MuladdMacro v0.2.4 [5da4648a] + NVTX v1.0.0 [9e8cae18] + Oceananigans v0.96.31 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [eebad327] + PkgVersion v0.3.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [94ee1d12] + Quaternions v0.7.6 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [a3311ec8] + ReactantCore v0.1.11 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.2.1 [d496a93d] + SeawaterPolynomials v0.3.10 [91c51154] + SentinelArrays v1.4.8 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.19.1 [f269a46b] + TimeZones v1.21.3 [bdfc003b] + TimesDates v0.3.1 [e689c965] + Tracy v0.1.4 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [4ee394cb] + CUDA_Driver_jll v0.13.0+0 [76a88914] + CUDA_Runtime_jll v0.17.0+0 [f5851436] + FFTW_jll v3.3.11+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] + LLVMExtra_jll v0.0.36+0 [ad6e5548] + LibTracyClient_jll v0.9.1+6 [d00139f3] + METIS_jll v5.1.3+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.1.1+0 [fe0851c0] + OpenMPI_jll v5.0.7+2 [1e29f10c] + demumble_jll v1.3.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 16.94s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 2374.52s ################################################################################ # Testing # Testing Oceananigans Status `/tmp/jl_VTaGlU/Project.toml` [21141c5a] AMDGPU v1.3.3 [79e6a3ab] Adapt v4.3.0 [052768ef] CUDA v5.8.2 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.2 [124859b0] DataDeps v0.7.13 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [7da242da] Enzyme v0.13.49 [7a1cc6ca] FFTW v1.9.0 [0c68f7d7] GPUArrays v11.2.2 [c27321d9] Glob v1.3.1 [42fd0dbc] IterativeSolvers v0.9.4 [033835bb] JLD2 v0.5.13 [63c18a36] KernelAbstractions v0.9.34 [ba0b0d4f] Krylov v0.10.1 [45d422c2] KrylovPreconditioners v0.3.4 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [dde4c033] Metal v1.6.0 [46d2c3a1] MuladdMacro v0.2.4 [85f8d34a] NCDatasets v0.14.8 [9e8cae18] Oceananigans v0.96.31 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [3c362404] Reactant v0.2.126 [a3311ec8] ReactantCore v0.1.11 [6038ab10] Rotations v1.7.1 [1bc83da4] SafeTestsets v0.1.0 [d496a93d] SeawaterPolynomials v0.3.10 [90137ffa] StaticArrays v1.9.13 [09ab397b] StructArrays v0.7.1 [bdfc003b] TimesDates v0.3.1 [8f75cd03] oneAPI v2.0.3 [76a88914] CUDA_Runtime_jll v0.17.0+0 [ade2ca70] Dates [b77e0a4c] InteractiveUtils [37e2e46d] LinearAlgebra [56ddb016] Logging [44cfe95a] Pkg v1.10.0 [de0858da] Printf [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_VTaGlU/Manifest.toml` [21141c5a] AMDGPU v1.3.3 [621f4979] AbstractFFTs v1.5.0 [6a4ca0a5] AcceleratedKernels v0.4.1 [79e6a3ab] Adapt v4.3.0 [dce04be8] ArgCheck v2.5.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [a9b6321e] Atomix v1.1.1 [ab4f0b2a] BFloat16s v0.5.1 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 ⌅ [179af706] CFTime v0.1.4 [052768ef] CUDA v5.8.2 [1af6417a] CUDA_Runtime_Discovery v0.3.5 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [1fbeeb36] CommonDataModel v0.3.8 [34da2185] Compat v4.16.0 [a216cea6] CompoundPeriods v0.5.4 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.2 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [3c3547ce] DiskArrays v0.4.13 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [7da242da] Enzyme v0.13.49 [f151be2c] EnzymeCore v0.8.11 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [21656369] ExpressionExplorer v1.1.3 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.5.1 [096a3bc2] GPUToolbox v0.2.0 [c27321d9] Glob v1.3.1 [cd3eb016] HTTP v1.10.16 [076d061b] HashArrayMappedTries v0.2.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.13 [692b3bcd] JLLWrappers v1.7.0 [63c18a36] KernelAbstractions v0.9.34 [ba0b0d4f] Krylov v0.10.1 [45d422c2] KrylovPreconditioners v0.3.4 [929cbde3] LLVM v9.4.0 [8b046642] LLVMLoopInfo v1.0.0 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [093fc24a] LightGraphs v1.3.5 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [dde4c033] Metal v1.6.0 [2679e427] Metis v1.5.0 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [46d2c3a1] MuladdMacro v0.2.4 [85f8d34a] NCDatasets v0.14.8 [5da4648a] NVTX v1.0.0 [d8793406] ObjectFile v0.4.4 [e86c9b32] ObjectiveC v3.4.1 [9e8cae18] Oceananigans v0.96.31 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [eebad327] PkgVersion v0.3.3 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [94ee1d12] Quaternions v0.7.6 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [3c362404] Reactant v0.2.126 [a3311ec8] ReactantCore v0.1.11 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [71d1d633] SPIRVIntrinsics v0.2.0 [1bc83da4] SafeTestsets v0.1.0 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [d496a93d] SeawaterPolynomials v0.3.10 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.1 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [53d494c1] StructIO v0.3.1 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 ⌅ [6aa5eb33] TaylorSeries v0.19.1 [f269a46b] TimeZones v1.21.3 [bdfc003b] TimesDates v0.3.1 [e689c965] Tracy v0.1.4 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [013be700] UnsafeAtomics v0.3.0 [8f75cd03] oneAPI v2.0.3 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [4ee394cb] CUDA_Driver_jll v0.13.0+0 [76a88914] CUDA_Runtime_jll v0.17.0+0 ⌅ [7cc45869] Enzyme_jll v0.0.181+0 [f5851436] FFTW_jll v3.3.11+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [f52de702] LLVMDowngrader_jll v0.6.0+0 [dad2f222] LLVMExtra_jll v0.0.36+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 ⌅ [86de99a1] LLVM_jll v15.0.7+10 [ad6e5548] LibTracyClient_jll v0.9.1+6 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [d00139f3] METIS_jll v5.1.3+0 [856f044c] MKL_jll v2025.0.1+1 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [700fe977] NEO_jll v24.26.30049+0 [e98f9f5b] NVTX_jll v3.1.1+0 [7243133f] NetCDF_jll v401.900.300+0 [6cb37087] OpenCL_jll v2024.10.24+1 [fe0851c0] OpenMPI_jll v5.0.7+2 [458c3c95] OpenSSL_jll v3.5.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [873c0968] ROCmDeviceLibs_jll v5.6.1+1 ⌅ [0192cb87] Reactant_jll v0.0.195+0 [4a5d46fc] SPIRV_LLVM_Translator_jll v20.1.0+5 [6ac6d60f] SPIRV_Tools_jll v2025.1.0+1 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [1e29f10c] demumble_jll v1.3.0+0 ⌅ [09858cae] gmmlib_jll v22.3.20+0 [477f73a3] libaec_jll v1.1.3+0 ⌅ [94295238] libigc_jll v1.0.17193+0 [337d8026] libzip_jll v1.11.3+0 ⌅ [f4bc562b] oneAPI_Level_Zero_Headers_jll v1.9.2+1 ⌃ [13eca655] oneAPI_Level_Zero_Loader_jll v1.17.6+0 [b049733a] oneAPI_Support_jll v0.8.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [d55e3150] LLD_jll v15.0.7+10 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8f36deef] libLLVM_jll v15.0.7+10 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 759 running 1 of 1 signal (10): User defined signal 1 read at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) _os_read at /source/src/support/ios.c:106 _ios_read at /source/src/support/ios.c:315 readbytes_all! at ./iostream.jl:468 #readbytes!#736 at ./iostream.jl:516 [inlined] readbytes! at ./iostream.jl:512 [inlined] readbytes! at ./iostream.jl:512 [inlined] _crc32c at ./util.jl:510 _crc32c at ./util.jl:505 [inlined] isvalid_file_crc at ./loading.jl:2558 [inlined] #stale_cachefile#988 at ./loading.jl:3233 stale_cachefile at ./loading.jl:3078 [inlined] _require_search_from_serialized at ./loading.jl:1622 _require at ./loading.jl:2008 __require_prelocked at ./loading.jl:1882 jfptr___require_prelocked_81107.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_in_world at /source/src/builtins.c:831 #invoke_in_world#3 at ./essentials.jl:926 [inlined] invoke_in_world at ./essentials.jl:923 [inlined] _require_prelocked at ./loading.jl:1873 macro expansion at ./loading.jl:1860 [inlined] macro expansion at ./lock.jl:267 [inlined] __require at ./loading.jl:1823 jfptr___require_81070.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_in_world at /source/src/builtins.c:831 #invoke_in_world#3 at ./essentials.jl:926 [inlined] invoke_in_world at ./essentials.jl:923 [inlined] require at ./loading.jl:1816 jfptr_require_81067.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] call_require at /source/src/toplevel.c:481 [inlined] eval_import_path at /source/src/toplevel.c:518 jl_toplevel_eval_flex at /source/src/toplevel.c:752 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81383.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x715b78578249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 749 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 #728 at ./asyncevent.jl:304 jfptr_YY.728_76138.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74802.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x71828dadb2e0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x71828dad3bd5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x71828dad36c0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x71828dad2f80) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x71828dacf679) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71828e8d8249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000718281200010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:1915; test ╎ ╎ ╎ 1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty… ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …/condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericConditi… ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1008; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL… [749] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/Oceananigans/1A73i/test/test_init.jl:3 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 [759] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/Metal/9TtJ4/lib/mps/libmps.jl:772 apply_cl at /source/src/flisp/flisp.c:1754 do_trycatch at /source/src/flisp/flisp.c:895 apply_cl at /source/src/flisp/flisp.c:1804 do_trycatch at /source/src/flisp/flisp.c:895 apply_cl at /source/src/flisp/flisp.c:1804 poptask at ./task.jl:999 _applyn at /source/src/flisp/flisp.c:679 poptask at ./task.jl:999 fl_applyn at /source/src/flisp/flisp.c:719 ijl_expand_with_loc_warn at /source/src/ast.c:1271 jl_toplevel_eval_flex at /source/src/toplevel.c:730 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 wait at ./task.jl:1008 wait at ./task.jl:1008 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #wait#647 at ./condition.jl:130 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 _include at ./loading.jl:2206 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 include at ./Base.jl:495 #1058 at ./Base.jl:608 #728 at ./asyncevent.jl:304 jfptr_YY.1058_85318.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 14692128 (Pool: 14660195; Big: 31933); GC: 18 jfptr_YY.728_76138.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1256 unknown function (ip: (nil)) Allocations: 30489648 (Pool: 30410549; Big: 79099); GC: 38 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Metal/9TtJ4/lib/mps/MPS.jl:9 unknown function (ip: 0x715b7777b6a5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 error in running finalizer: ErrorException("val already in a list") _include at ./loading.jl:2206 error at ./error.jl:35 include at ./Base.jl:495 PkgEval terminated after 2734.59s: test duration exceeded the time limit