Package evaluation of Metida on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T20:01:03.932 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.25s ################################################################################ # Installation # Installing Metida... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [a1dec852] + Metida v0.17.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [2a0fbf3d] + CPUSummary v0.2.6 [324d7699] + CategoricalArrays v0.10.8 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [a1dec852] + Metida v0.17.0 [075456b7] + MetidaBase v0.14.1 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [d6f4376e] + Markdown [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 54.07s ################################################################################ # Testing # Testing Metida Status `/tmp/jl_RYzvFv/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.0 [163ba53b] DiffResults v1.1.0 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [d3d80556] LineSearches v7.3.0 [a1dec852] Metida v0.17.0 [075456b7] MetidaBase v0.14.1 [429524aa] Optim v1.12.0 [92933f4c] ProgressMeter v1.10.4 [860ef19b] StableRNGs v1.0.3 [2913bbd2] StatsBase v0.34.5 [3eaba693] StatsModels v0.7.4 [37e2e46d] LinearAlgebra [9a3f8284] Random [8dfed614] Test Status `/tmp/jl_RYzvFv/Manifest.toml` [47edcb42] ADTypes v1.14.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.19.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [a1dec852] Metida v0.17.0 [075456b7] MetidaBase v0.14.1 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [aedffcd0] Static v1.2.0 [1e83bf80] StaticArraysCore v1.4.3 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [9fa8497b] Future [b77e0a4c] InteractiveUtils [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: Fixed-effect matrix not full-rank! Number of fixet effects reduced from 82 to 81. └ @ Metida ~/.julia/packages/Metida/nUYzG/src/lmm.jl:127 Test Summary: | Pass Total Time Publick API basic tests | 114 114 9m08.1s Test Summary: | Pass Total Time Model: Only repeated, 0/DIAG | 4 4 0.0s Test Summary: | Pass Total Time Model: Only repeated, noblock, 0/CSH (rholinkf = :atan) | 3 3 2.2s Test Summary: | Pass Total Time Model: Only random, noblock, SI/SI | 3 3 2.3s Test Summary: | Pass Total Time Model: Only random, INT, SI/SI | 3 3 0.0s Test Summary: | Pass Total Time Model: Noblock, equal subjects, CSH/CS + UN euqiv | 4 4 2.8s Test Summary: | Pass Total Time Model: Different subjects, INT, CSH/DIAG | 3 3 0.5s Test Summary: | Pass Total Time Model: CSH/DIAG (rholinkf = :psigm) & lmmformula | 4 4 0.3s Test Summary: | Pass Total Time Model: Categorical * Continuous predictor, CSH/SI | 3 3 5.8s Test Summary: | Pass Total Time Model: Function terms, CSH/SI | 1 1 7.3s Test Summary: | Pass Total Time Model: Categorical * Continuous predictor, 0/ARMA | 1 1 1.6s Test Summary: | Pass Total Time Model: Categorical * Continuous predictor, DIAG/AR | 1 1 2.3s Test Summary: | Pass Total Time Model: Categorical * Continuous predictor, 0/ARH | 1 1 1.9s Test Summary: | Pass Total Time Model: CS, CS/SI | 2 2 10.2s Test Summary: | Pass Total Time Model: SI, SI/CSH | 5 5 1m10.3s Test Summary: | Pass Total Time Model: AR/SI | 5 5 15.1s Test Summary: | Pass Total Time Model: ARMA/SI | 2 2 4.9s Test Summary: | Pass Total Time Model: ARH/SI (subjects with &) | 4 4 6.3s Test Summary: | Pass Total Time Model: INT, *, DIAG/SI | 2 2 56.7s Test Summary: | Pass Total Time Model: &, DIAG/SI | 2 2 3.3s Test Summary: | Pass Total Time Model: INT, +, TOEPHP(3)/SI | 2 2 1.8s Test Summary: | Pass Total Time Model: TOEP/SI | 1 1 2.7s Test Summary: | Pass Total Time Model: TOEPP(2)/SI | 1 1 0.8s Test Summary: | Pass Total Time Model: DIAG/TOEPP(3) | 1 1 3.5s Test Summary: | Pass Total Time Model: TOEPH/SI | 1 1 46.6s Test Summary: | Pass Total Time Model: SI/TOEPHP(3) | 1 1 9.2s Test Summary: | Pass Total Time Model: UN (repeated) missing | 10 10 9.9s Test Summary: | Pass Total Time Model: BE RDS 1, FDA model | 7 7 1.0s Test Summary: | Pass Total Time Model: BE RDS 1, 2X2 + UN test | 3 3 8.5s Test Summary: | Pass Total Time Model: Custom covariance type | 3 3 2.8s Test Summary: | Pass Total Time Model: Spatial Exponential | 3 3 4.2s Test Summary: | Pass Total Time Model: Augmented covariance | 5 5 16.5s Test Summary: | Pass Total Time Random | 2 2 1.4s Test Summary: | Pass Total Time Show functions | 28 28 7.9s Test Summary: | Pass Total Time Errors test | 11 11 3.1s Test Summary: | Pass Total Time Sweep operator test | 3 3 3.0s Test Summary: | Pass Total Time Experimental | 17 17 47.7s Testing Metida tests passed Testing completed after 1046.24s PkgEval succeeded after 1130.36s