Package evaluation of LaplacianExpectationMaximization on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T19:25:58.067 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.36s ################################################################################ # Installation # Installing LaplacianExpectationMaximization... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [610349f3] + LaplacianExpectationMaximization v0.1.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [d360d2e6] + ChainRulesCore v1.25.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.27 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [033835bb] + JLD2 v0.5.13 [692b3bcd] + JLLWrappers v1.7.0 [610349f3] + LaplacianExpectationMaximization v0.1.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [3bd65402] + Optimisers v0.4.6 [65fa8838] + OptimizationCallbacks v0.1.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 414.09s ################################################################################ # Testing # Testing LaplacianExpectationMaximization Status `/tmp/jl_lFqh5T/Project.toml` [47edcb42] ADTypes v1.14.0 [4c88cf16] Aqua v0.8.13 [b0b7db55] ComponentArrays v0.15.27 [2569d6c7] ConcreteStructs v0.2.3 [31c24e10] Distributions v0.25.120 [7da242da] Enzyme v0.13.49 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [c3a54625] JET v0.9.18 [033835bb] JLD2 v0.5.13 [610349f3] LaplacianExpectationMaximization v0.1.0 [2ab3a3ac] LogExpFunctions v0.3.29 [76087f3c] NLopt v1.1.4 [3bd65402] Optimisers v0.4.6 [7f7a1694] Optimization v4.3.0 [36348300] OptimizationOptimJL v0.4.3 [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_lFqh5T/Manifest.toml` [47edcb42] ADTypes v1.14.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] 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p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time GaussianModel | 3 3 5.1s Test Summary: | Pass Total Time BiasedCoin | 3 3 1.6s Test Summary: | Pass Total Time HabituatingBiasedCoin | 3 3 0.4s Test Summary: | Pass Total Time MarkovChain | 1 1 3.2s Test Summary: | Pass Total Time HabituatingMarkovChain | 1 1 1.9s Test Summary: | Pass Total Time gradlogp & hesslogp | 14 14 1m54.8s Test Summary: | Pass Broken Total Time ForwardDiff & Enzyme | 1 1 2 2.9s Test Summary: | Pass Total Time NormalPrior | 1 1 2.0s Test Summary: | Pass Total Time copy_elements | 5 5 6.2s Test Summary: | Pass Total Time distribute_shared | 4 4 9.9s Test Summary: | Pass Total Time drop | 8 8 6.8s Test Summary: | Pass Total Time fix | 34 34 1m18.9s ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#22#23"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#24#25"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#40#41"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#34#35"{Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}, Vector{Vector{Bool}}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#66#67". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#66#67". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 eval | current | lowest | highest _________________________________________________ 2 | -1867.16 | -1867.16 | -1867.16 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 3 | -462.114 | -1867.16 | -462.114 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 3010 | -394.145 | -1867.16 | -394.145 6628 | -394.145 | -1867.16 | -394.145 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 6829 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 7513 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 7771 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 7944 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 8069 | -156549 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 8179 | -234361 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 8268 | -325950 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 8348 | -427252 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 8426 | -535634 | -Inf | -394.145 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 8528 | -204.883 | -Inf | -204.883 Test Summary: | Pass Total Time maximize_logp | 3 3 3m44.7s Test Summary: | Pass Total Time populations | 5 5 10.7s Test Summary: | Pass Total Time PopGradLogP | 11 11 27.2s Test Summary: | Pass Total Time BIC_int | 1 1 2.1s Test Summary: | Pass Total Time population recovery | 5 5 39.3s Test Summary: | Pass Total Time single sample recovery | 5 5 19.7s [toplevel-info] virtualized the context of Main (took 0.066 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/LaplacianExpectationMaximization.jl [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/api.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/api.jl (took 0.663 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/simulate.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/simulate.jl (took 2.616 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/populations.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/populations.jl (took 0.094 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/helper.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/helper.jl (took 0.119 sec) [toplevel-info] entered into 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