Package evaluation of Knockoffs on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T22:59:20.450


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.16s


################################################################################
# Installation
#

Installing Knockoffs...
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [878bf26d] + Knockoffs v2.0.2
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.19.0
⌅ [67c07d97] + Automa v0.8.4
  [28d598bf] + BGZFStreams v0.3.2
  [6e4b80f9] + BenchmarkTools v1.6.0
  [47718e42] + BioGenerics v0.1.5
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
⌅ [0a1fb500] + BlockDiagonals v0.1.42
  [e1450e63] + BufferedStreams v1.2.2
  [2a0fbf3d] + CPUSummary v0.2.6
  [336ed68f] + CSV v0.10.15
  [d360d2e6] + ChainRulesCore v1.25.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [aaaa29a8] + Clustering v0.15.8
  [523fee87] + CodecBzip2 v0.8.5
  [ba30903b] + CodecXz v0.7.4
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [861a8166] + Combinatorics v1.0.3
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [187b0558] + ConstructionBase v1.5.8
  [587fd27a] + CovarianceEstimation v0.2.13
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.4
  [fdbdab4c] + ElasticArrays v1.2.12
  [4e289a0a] + EnumX v1.0.5
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
  [26cc04aa] + FiniteDifferences v0.12.32
  [f6369f11] + ForwardDiff v1.0.1
  [38e38edf] + GLM v1.9.0
⌃ [8d5ece8b] + GLMNet v0.7.0
  [14197337] + GenericLinearAlgebra v0.3.17
  [c27321d9] + Glob v1.3.1
  [3e5b6fbb] + HostCPUFeatures v0.1.17
⌅ [b99e6be6] + Hypatia v0.7.4
  [34004b35] + HypergeometricFunctions v0.3.28
  [615f187c] + IfElse v0.1.1
  [842dd82b] + InlineStrings v1.4.3
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [42fd0dbc] + IterativeSolvers v0.9.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [4076af6c] + JuMP v1.26.0
  [878bf26d] + Knockoffs v2.0.2
  [b964fa9f] + LaTeXStrings v1.4.0
  [10f19ff3] + LayoutPointers v0.1.17
  [d3d80556] + LineSearches v7.3.0
  [7a12625a] + LinearMaps v3.11.4
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [bdcacae8] + LoopVectorization v0.12.172
  [1914dd2f] + MacroTools v0.5.16
  [d125e4d3] + ManualMemory v0.1.8
  [b8f27783] + MathOptInterface v1.40.2
  [e1d29d7a] + Missings v1.2.0
  [d8a4904e] + MutableArithmetics v1.6.4
  [d41bc354] + NLSolversBase v7.9.1
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.21
  [6fe1bfb0] + OffsetArrays v1.17.0
  [429524aa] + Optim v1.12.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [1d0040c9] + PolyesterWeave v0.2.2
  [3a141323] + PolynomialRoots v1.0.0
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [708f8203] + Richardson v1.4.2
  [79098fc4] + Rmath v0.8.0
  [f2b01f46] + Roots v2.2.7
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [1277b4bf] + ShiftedArrays v2.0.0
  [4e780e97] + SnpArrays v0.3.22
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [aedffcd0] + Static v1.2.0
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [856f2bd8] + StructTypes v1.11.0
  [9449cd9e] + TSVD v0.4.4
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [8290d209] + ThreadingUtilities v0.5.4
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [3a884ed6] + UnPack v1.0.2
  [28eba6e3] + VariantCallFormat v0.5.6
  [3d5dd08c] + VectorizationBase v0.21.71
  [ea10d353] + WeakRefStrings v1.4.2
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [78c6b45d] + glmnet_jll v5.0.0+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [9abbd945] + Profile
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 10.2s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 668.99s


################################################################################
# Testing
#

     Testing Knockoffs
      Status `/tmp/jl_zbUFKn/Project.toml`
⌅ [0a1fb500] BlockDiagonals v0.1.42
  [336ed68f] CSV v0.10.15
  [aaaa29a8] Clustering v0.15.8
  [587fd27a] CovarianceEstimation v0.2.13
  [a93c6f00] DataFrames v1.7.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [fdbdab4c] ElasticArrays v1.2.12
  [38e38edf] GLM v1.9.0
⌃ [8d5ece8b] GLMNet v0.7.0
⌅ [b99e6be6] Hypatia v0.7.4
  [4076af6c] JuMP v1.26.0
  [878bf26d] Knockoffs v2.0.2
  [bdcacae8] LoopVectorization v0.12.172
  [429524aa] Optim v1.12.0
  [85a6dd25] PositiveFactorizations v0.2.4
  [92933f4c] ProgressMeter v1.10.4
  [189a3867] Reexport v1.2.2
  [f2b01f46] Roots v2.2.7
  [4e780e97] SnpArrays v0.3.22
⌅ [2913bbd2] StatsBase v0.33.21
  [c751599d] ToeplitzMatrices v0.8.5
  [f43a241f] Downloads v1.6.0
  [37e2e46d] LinearAlgebra
  [9a3f8284] Random
  [10745b16] Statistics v1.10.0
  [8dfed614] Test
      Status `/tmp/jl_zbUFKn/Manifest.toml`
  [47edcb42] ADTypes v1.14.0
  [621f4979] AbstractFFTs v1.5.0
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [4fba245c] ArrayInterface v7.19.0
⌅ [67c07d97] Automa v0.8.4
  [28d598bf] BGZFStreams v0.3.2
  [6e4b80f9] BenchmarkTools v1.6.0
  [0e736298] Bessels v0.2.8
  [47718e42] BioGenerics v0.1.5
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
⌅ [0a1fb500] BlockDiagonals v0.1.42
  [e1450e63] BufferedStreams v1.2.2
  [2a0fbf3d] CPUSummary v0.2.6
  [336ed68f] CSV v0.10.15
  [d360d2e6] ChainRulesCore v1.25.1
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [aaaa29a8] Clustering v0.15.8
  [523fee87] CodecBzip2 v0.8.5
  [ba30903b] CodecXz v0.7.4
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.6
  [861a8166] Combinatorics v1.0.3
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [a33af91c] CompositionsBase v0.1.2
  [187b0558] ConstructionBase v1.5.8
  [587fd27a] CovarianceEstimation v0.2.13
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [717857b8] DSP v0.8.3
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
⌅ [a0c0ee7d] DifferentiationInterface v0.6.54
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.4
  [fdbdab4c] ElasticArrays v1.2.12
  [4e289a0a] EnumX v1.0.5
  [7a1cc6ca] FFTW v1.9.0
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [6a86dc24] FiniteDiff v2.27.0
  [26cc04aa] FiniteDifferences v0.12.32
  [f6369f11] ForwardDiff v1.0.1
  [38e38edf] GLM v1.9.0
⌃ [8d5ece8b] GLMNet v0.7.0
  [14197337] GenericLinearAlgebra v0.3.17
  [c27321d9] Glob v1.3.1
  [3e5b6fbb] HostCPUFeatures v0.1.17
⌅ [b99e6be6] Hypatia v0.7.4
  [34004b35] HypergeometricFunctions v0.3.28
  [615f187c] IfElse v0.1.1
  [842dd82b] InlineStrings v1.4.3
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [c8e1da08] IterTools v1.10.0
  [42fd0dbc] IterativeSolvers v0.9.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [0f8b85d8] JSON3 v1.14.3
  [4076af6c] JuMP v1.26.0
  [878bf26d] Knockoffs v2.0.2
  [b964fa9f] LaTeXStrings v1.4.0
  [10f19ff3] LayoutPointers v0.1.17
  [d3d80556] LineSearches v7.3.0
  [7a12625a] LinearMaps v3.11.4
  [2ab3a3ac] LogExpFunctions v0.3.29
  [bdcacae8] LoopVectorization v0.12.172
  [1914dd2f] MacroTools v0.5.16
  [d125e4d3] ManualMemory v0.1.8
  [b8f27783] MathOptInterface v1.40.2
  [e1d29d7a] Missings v1.2.0
  [d8a4904e] MutableArithmetics v1.6.4
  [d41bc354] NLSolversBase v7.9.1
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.21
  [6fe1bfb0] OffsetArrays v1.17.0
  [429524aa] Optim v1.12.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.3
  [1d0040c9] PolyesterWeave v0.2.2
  [3a141323] PolynomialRoots v1.0.0
  [f27b6e38] Polynomials v4.0.19
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [708f8203] Richardson v1.4.2
  [79098fc4] Rmath v0.8.0
  [f2b01f46] Roots v2.2.7
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [91c51154] SentinelArrays v1.4.8
  [efcf1570] Setfield v1.1.2
  [1277b4bf] ShiftedArrays v2.0.0
  [4e780e97] SnpArrays v0.3.22
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [aedffcd0] Static v1.2.0
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [82ae8749] StatsAPI v1.7.1
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.5.0
  [3eaba693] StatsModels v0.7.4
  [892a3eda] StringManipulation v0.4.1
  [856f2bd8] StructTypes v1.11.0
  [9449cd9e] TSVD v0.4.4
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [8290d209] ThreadingUtilities v0.5.4
  [c751599d] ToeplitzMatrices v0.8.5
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [3a884ed6] UnPack v1.0.2
  [28eba6e3] VariantCallFormat v0.5.6
  [3d5dd08c] VectorizationBase v0.21.71
  [ea10d353] WeakRefStrings v1.4.2
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
  [6e34b625] Bzip2_jll v1.0.9+0
  [f5851436] FFTW_jll v3.3.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [856f044c] MKL_jll v2025.0.1+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [78c6b45d] glmnet_jll v5.0.0+0
  [1317d2d5] oneTBB_jll v2022.0.0+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [4af54fe1] LazyArtifacts
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.10.0
  [de0858da] Printf
  [9abbd945] Profile
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.4.0+0
  [e37daf67] LibGit2_jll v1.6.4+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.2+1
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+4
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.2.1+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.52.0+1
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
 92.393605 seconds (34.47 M allocations: 2.813 GiB, 2.26% gc time, 98.89% compilation time)
Test Summary:   |  Pass  Total     Time
fixed knockoffs | 10204  10204  1m33.6s
  7.916444 seconds (276.50 k allocations: 187.156 MiB, 3.27% gc time)
Test Summary:              | Pass  Total  Time
model X Guassian Knockoffs |    4      4  7.9s
  3.988219 seconds (262.38 k allocations: 189.017 MiB, 14.42% gc time)
Test Summary:               | Pass  Total  Time
model X 2nd order Knockoffs |    3      3  4.0s
Test Summary:     |   Pass   Total   Time
utility functions | 247430  247430  13.6s
Test Summary: | Pass  Total  Time
MK_statistics |   16     16  1.9s
Test Summary:                                               | Pass  Total   Time
Markov chain knockoffs have the right correlation structure |   55     55  18.6s
 23.655932 seconds (549.19 k allocations: 595.290 MiB, 0.86% gc time)
  0.117387 seconds (55 allocations: 15.384 MiB)
  0.130684 seconds (57 allocations: 15.389 MiB)
  3.373865 seconds (212.78 k allocations: 62.792 MiB, 39.51% compilation time)
  2.845586 seconds (755 allocations: 49.643 MiB)
  2.860168 seconds (755 allocations: 49.643 MiB)
Test Summary:              | Pass  Total   Time
SDP vs MVR vs ME knockoffs |    2      2  33.0s
 34.851235 seconds (560.21 k allocations: 592.832 MiB, 2.11% gc time)
  0.848657 seconds (39 allocations: 10.467 MiB)
Test Summary:   | Pass  Total   Time
SDP vs SDP fast |    1      1  35.7s
  0.548047 seconds (39 allocations: 10.467 MiB)
  1.398548 seconds (39 allocations: 10.467 MiB)
Test Summary:     | Pass  Total  Time
keyword arguments |    1      1  2.0s
  0.558843 seconds (55 allocations: 42.423 MiB, 6.72% gc time)
  5.364231 seconds (760 allocations: 125.324 MiB, 0.74% gc time)
  5.406297 seconds (952 allocations: 136.146 MiB, 0.05% gc time)
Test Summary:                        | Pass  Total   Time
debiasing preserves sparsity pattern |    5      5  11.4s
┌ Warning: `Progress(n::Integer, dt::Real, desc::AbstractString = "Progress: ", barlen = nothing, color::Symbol = :green, output::IO = stderr; offset::Integer = 0)` is deprecated, use `Progress(n; dt = dt, desc = desc, barlen = barlen, color = color, output = output, offset = offset)` instead.
│   caller = ip:0x0
└ @ Core :-1

Approximating covariance by blocks...  33%|████▋         |  ETA: 0:00:03
Approximating covariance by blocks... 100%|██████████████| Time: 0:00:03
 10.716228 seconds (2.03 M allocations: 642.929 MiB, 1.39% gc time, 68.26% compilation time)
  0.419157 seconds (717 allocations: 43.013 MiB)
  1.145681 seconds (737 allocations: 202.089 MiB, 9.21% gc time)
Test Summary:             | Pass  Total   Time
approximate constructions |    4      4  12.4s
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 0.8767629533082448
norm(ko.betas[i] - b) = 0.9356208228898971
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 0.6014451799923305
norm(ko.betas[i] - b) = 0.9258529744157991
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 3.3454937386220522
norm(ko.betas[i] - b) = 0.8590402919777409
norm(ko.betas[i] - b) = 0.863992012891004
Test Summary:      | Pass  Total  Time
fit lasso Gaussian |    3      3  2.1s
norm(ls_ko.betas[i] - b) = 4.072391064775389
norm(ls_ko.betas[i] - b) = 4.072391064775389
norm(ls_ko.betas[i] - b) = 4.072391064775389
norm(ls_ko.betas[i] - b) = 0.7415681288283337
norm(ls_ko.betas[i] - b) = 0.9636483604768742
norm(lasso_ko.betas[i] - b) = 4.072391064775389
norm(lasso_ko.betas[i] - b) = 4.072391064775389
norm(lasso_ko.betas[i] - b) = 3.70966387903355
norm(lasso_ko.betas[i] - b) = 3.710691888096125
norm(lasso_ko.betas[i] - b) = 3.719044549397052
norm(nodebias_ko.betas[i] - b) = 4.072391064775389
norm(nodebias_ko.betas[i] - b) = 4.072391064775389
norm(nodebias_ko.betas[i] - b) = 4.072391064775389
norm(nodebias_ko.betas[i] - b) = 3.75347010995881
norm(nodebias_ko.betas[i] - b) = 3.7527584360250956
Test Summary:      | Pass  Total   Time
fit lasso logistic |    3      3  44.9s
Test Summary:               | Pass  Total  Time
predict via knockoff-filter |   15     15  1.6s
 79.661221 seconds (27.68 M allocations: 1.729 GiB, 3.81% gc time, 99.99% compilation time)
SDP initial obj = 2.600000000000002
Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 2 (PCA): obj = 0.0076425694218480575, δ = 0.1049513868593349, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 3 (PCA): obj = 0.0034459041620199357, δ = 0.012891029698779576, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 4 (PCA): obj = 0.002468051757417651, δ = 0.004615087855127155, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 5 (PCA): obj = 0.0017054405081494684, δ = 0.00934076126679786, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 6 (PCA): obj = 0.0012815483847531087, δ = 0.0036136772135410087, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 7 (PCA): obj = 0.0009487836727680071, δ = 0.0020343293010157046, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 8 (PCA): obj = 0.000730738543804908, δ = 0.0014838583134576626, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 9 (PCA): obj = 0.0006182524210547019, δ = 0.0006769799569998174, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 10 (PCA): obj = 0.000558175587766423, δ = 0.0006571834545315721, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 11 (PCA): obj = 0.0005253955252115187, δ = 0.0002733251270502751, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 12 (PCA): obj = 0.0005011821332138296, δ = 0.00017258408984083783, t1 = 0.0, t2 = 0.0, t3 = 0.01
Iter 13 (PCA): obj = 0.0005003029756800681, δ = 0.00012494593920418898, t1 = 0.0, t2 = 0.0, t3 = 0.01
  6.271799 seconds (1.06 M allocations: 79.236 MiB, 99.61% compilation time)
SDP initial obj = 2.600000000000002
Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 2 (PCA): obj = 0.007642569421848044, δ = 0.1049513868593349, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 3 (PCA): obj = 0.003445904162019915, δ = 0.012891029698779576, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 4 (PCA): obj = 0.002468051757417631, δ = 0.004615087855127155, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 5 (PCA): obj = 0.0017054405081494545, δ = 0.00934076126679786, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 6 (PCA): obj = 0.0012815483847530853, δ = 0.0036136772135410087, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 7 (PCA): obj = 0.0009487836727679915, δ = 0.0020343293010157046, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 8 (PCA): obj = 0.0007307385438048969, δ = 0.0014838583134576626, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 9 (PCA): obj = 0.0006182524210546915, δ = 0.0006769799569998174, t1 = 0.0, t2 = 0.0, t3 = 0.01
Iter 10 (PCA): obj = 0.0005581755877664172, δ = 0.0006571834545315721, t1 = 0.0, t2 = 0.0, t3 = 0.01
Iter 11 (CCD): obj = 2.084040498699191e-15, δ = 0.0012531657723307554, t1 = 0.0, t2 = 0.0, t3 = 0.01
Iter 12 (CCD): obj = 2.084040498699191e-15, δ = 0.0, t1 = 0.0, t2 = 0.0, t3 = 0.01
Iter 13 (PCA): obj = 0.00012393119554853323, δ = 9.45712295155215e-5, t1 = 0.0, t2 = 0.01, t3 = 0.01
Iter 14 (CCD): obj = 2.0637767177437896e-15, δ = 4.6788636386851934e-5, t1 = 0.01, t2 = 0.01, t3 = 0.01
  0.029062 seconds (4.04 k allocations: 11.567 MiB)
SDP initial obj = 2.600000000000002
Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 2 (CCD): obj = 2.0263912245508265e-15, δ = 0.026246930919087696, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 3 (PCA): obj = 0.00012393119554919874, δ = 9.4571229516383e-5, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 4 (CCD): obj = 1.9964477628324397e-15, δ = 4.678863638751807e-5, t1 = 0.0, t2 = 0.0, t3 = 0.0
  0.014701 seconds (1.91 k allocations: 11.383 MiB)
MVR initial obj = 3627.7584052390794
Iter 1 (PCA): obj = 2134.333834179735, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0
Iter 2 (PCA): obj = 2134.2325877013504, δ = 0.064365048700893, t1 = 0.0, t2 = 0.0
  1.538277 seconds (229.41 k allocations: 25.234 MiB, 1.89% gc time, 99.10% compilation time)
MVR initial obj = 3627.7584052390794
Iter 1 (PCA): obj = 2134.333834179735, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0
Iter 2 (PCA): obj = 2134.2325877013504, δ = 0.064365048700893, t1 = 0.0, t2 = 0.0
Iter 3 (CCD): obj = 2134.2325877012877, δ = 2.3275091878961352e-7, t1 = 0.0, t2 = 0.0,t3 = 0.0
  0.017041 seconds (1.08 k allocations: 11.462 MiB)
MVR initial obj = 3627.7584052390794
Iter 1 (PCA): obj = 2134.333834179735, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0
Iter 2 (CCD): obj = 2134.32441057449, δ = 0.0011116260339162362, t1 = 0.0, t2 = 0.0,t3 = 0.0
Iter 3 (PCA): obj = 2134.2327037668088, δ = 0.061319793151697825, t1 = 0.0, t2 = 0.0
Iter 4 (CCD): obj = 2134.2326519499584, δ = 0.00012568491784442073, t1 = 0.0, t2 = 0.01,t3 = 0.0
  0.020914 seconds (1.33 k allocations: 11.482 MiB)
Maxent initial obj = -257.9275190821772
Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0
Iter 2 (PCA): obj = -153.24879130720362, δ = 0.06018956607736612, t1 = 0.0, t2 = 0.0
  1.170342 seconds (145.01 k allocations: 20.560 MiB, 1.69% gc time, 99.03% compilation time)
Maxent initial obj = -257.9275190821772
Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0
Iter 2 (PCA): obj = -153.24879130720362, δ = 0.06018956607736612, t1 = 0.0, t2 = 0.0
Iter 3 (CCD): obj = -153.2487895675824, δ = 0.00010284693384665026, t1 = 0.0, t2 = 0.0, t3 = 0.0
  0.012293 seconds (1.06 k allocations: 11.334 MiB)
Maxent initial obj = -257.9275190821772
Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0
Iter 2 (CCD): obj = -153.26564804055067, δ = 0.003144588665808597, t1 = 0.0, t2 = 0.0, t3 = 0.0
Iter 3 (PCA): obj = -153.24886074953, δ = 0.05119933659455436, t1 = 0.0, t2 = 0.0
Iter 4 (CCD): obj = -153.24880953840918, δ = 0.0006013379878981288, t1 = 0.0, t2 = 0.0, t3 = 0.0
  0.014148 seconds (1.31 k allocations: 11.355 MiB)
Init obj = 3.210898467642159, with 10 unique blocks to optimze
Iter 1: obj = 1.8202789018199188, δ = 0.6447195185021182
Iter 2: obj = 1.6925411140547804, δ = 0.2743538326852079
Iter 3: obj = 1.6510401621841908, δ = 0.12431151067967647
Iter 4: obj = 1.6275220350678024, δ = 0.11911990018936008
Iter 5: obj = 1.6169229531316454, δ = 0.1450128920668679
Iter 6: obj = 1.611171105703301, δ = 0.14334198792253133
Iter 7: obj = 1.6071260813423671, δ = 0.10652763738081616
Iter 8: obj = 1.6044395322641698, δ = 0.07268718363075649
Iter 9: obj = 1.602592895147627, δ = 0.033106309483791896
Iter 10: obj = 1.6012462188891912, δ = 0.02757037601820117
Iter 11: obj = 1.6002009932725478, δ = 0.02964597939174629
Iter 12: obj = 1.5994417531359963, δ = 0.022015341874221717
Iter 13: obj = 1.598831635868717, δ = 0.033848253346049406
Iter 14: obj = 1.5984343681358881, δ = 0.030350702474850277
Iter 15: obj = 1.598020569512669, δ = 0.027870339912380387
Iter 16: obj = 1.5977227895820378, δ = 0.03642199127686149
Iter 17: obj = 1.5974864177237633, δ = 0.04073767216130536
Iter 18: obj = 1.5973146067132054, δ = 0.045220101765894916
Iter 19: obj = 1.5971833304330116, δ = 0.047514948340714125
Iter 20: obj = 1.5970837250554273, δ = 0.01965422130162514
Iter 21: obj = 1.597013835540516, δ = 0.04005804422101192
Iter 22: obj = 1.5969656748199625, δ = 0.027832155363158112
Iter 23: obj = 1.5969274746826474, δ = 0.02225730952731686
Iter 24: obj = 1.5968960487759154, δ = 0.019876204223526983
Iter 25: obj = 1.5968712400403025, δ = 0.07880736887318934
Iter 26: obj = 1.5968515763253939, δ = 0.10556146627493518
Iter 27: obj = 1.5968344776263672, δ = 0.009991248253616303
 34.691056 seconds (9.96 M allocations: 624.842 MiB, 0.76% gc time, 88.93% compilation time)
Init obj = 4880.065461558531, with 10 unique blocks to optimze
Iter 1: obj = 2597.6514029404525, δ = 0.513100859821477
Iter 2: obj = 2598.9287440626063, δ = 0.1796227526803461
Iter 3: obj = 2623.28243485614, δ = 0.045694932751885076
Iter 4: obj = 2631.303122178318, δ = 0.02026269308527373
Iter 5: obj = 2637.0931775777553, δ = 0.015504322673946302
Iter 6: obj = 2641.0009644808133, δ = 0.012188217365406206
Iter 7: obj = 2643.5672792345918, δ = 0.00817582864637656
 28.999112 seconds (9.81 M allocations: 1.139 GiB, 0.85% gc time, 39.15% compilation time)
Init obj = -328.30287439580496, with 10 unique blocks to optimze
Iter 1: obj = -236.8588961324936, δ = 0.1938779897602938
Iter 2: obj = -239.0672610713603, δ = 0.016319679621818683
Iter 3: obj = -239.00385187776783, δ = 0.0010074826805379633
 19.250221 seconds (6.42 M allocations: 426.168 MiB, 1.10% gc time, 96.21% compilation time)
  0.083514 seconds (29.21 k allocations: 13.401 MiB, 27.92% compilation time)
  0.705648 seconds (86.50 k allocations: 47.685 MiB, 3.47% gc time, 3.18% compilation time)
Test Summary:               | Pass  Total     Time
group knockoff optimization | 3558   3558  2m58.5s
  3.032013 seconds (470.65 k allocations: 31.323 MiB, 1.74% gc time, 99.46% compilation time)
Test Summary:                    | Pass  Total  Time
block descent for a single block |    2      2  8.7s
Test Summary:            | Pass  Total  Time
group knockoff utilities |    7      7  3.7s
Test Summary:                  | Pass  Total   Time
representative group knockoffs |   14     14  57.6s
  1.090020 seconds (1.87 k allocations: 147.064 MiB)
  1.536498 seconds (1.90 k allocations: 271.741 MiB)
Test Summary:      | Pass  Total     Time
multiple knockoffs |    8      8  3m08.5s
     Testing Knockoffs tests passed 

Testing completed after 949.9s

PkgEval succeeded after 1664.15s