Package evaluation of ISOKANN on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-07T03:51:47.036 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.77s ################################################################################ # Installation # Installing ISOKANN... Resolving package versions... Installed Conda ── v1.10.2 Installed FFMPEG ─ v0.2.4 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.10/Project.toml` [512544ac] + ISOKANN v1.2.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 [a963bdd2] + AtomsBase v0.5.1 [67c07d97] + Automa v1.1.0 [77b51b56] + AverageShiftedHistograms v0.8.9 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [ab4f0b2a] + BFloat16s v0.5.1 [198e06fe] + BangBang v0.4.4 [18cc8868] + BaseDirs v1.3.0 [9718e550] + Baselet v0.1.1 [b99e7846] + BinaryProvider v0.5.10 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.5.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [824d6782] + Bonito v4.0.5 [70df07ce] + BracketingNonlinearSolve v1.3.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [96374032] + CRlibm v1.0.2 [052768ef] + CUDA v5.8.2 [1af6417a] + CUDA_Runtime_Discovery v0.3.5 [082447d4] + ChainRules v1.72.4 [d360d2e6] + ChainRulesCore v1.25.1 [46823bd8] + Chemfiles v0.10.42 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [8f4d0f93] + Conda v1.10.2 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [927a84f5] + DelaunayTriangulation v1.6.4 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.175.0 [459566f4] + DiffEqCallbacks v4.6.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.11 [429591f6] + ExactPredicates v2.2.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + 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GeoInterface v1.4.1 [5c1252a2] + GeometryBasics v0.5.9 [86223c79] + Graphs v1.13.0 [3955a311] + GridLayoutBase v0.11.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.16 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [47d2ed2b] + Hyperscript v0.0.5 [7869d1d1] + IRTools v0.4.14 [512544ac] + ISOKANN v1.2.0 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.3 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v0.22.35 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.13 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [b835a17e] + JpegTurbo v0.1.6 [b14d175d] + JuliaVariables v0.2.4 [ccbc3e58] + JumpProcesses v9.15.0 [63c18a36] + KernelAbstractions v0.9.34 [5ab0869b] + KernelDensity v0.6.9 [ba0b0d4f] + Krylov v0.10.1 [929cbde3] + LLVM v9.4.0 [8b046642] + LLVMLoopInfo v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.8 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [8cdb02fc] + LazyModules v0.3.1 [2d8b4e74] + LevyArea v1.0.0 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.3.0 [7ed4a6bd] + LinearSolve v3.17.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [2fda8390] + LsqFit v0.15.1 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.10.0 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [ee78f7c6] + Makie v0.22.10 [20f20a25] + MakieCore v0.9.5 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[d8fb68d0] + xkbcommon_jll v1.8.1+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [8bf52ea8] + CRC32c [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building FFMPEG → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9143266ba77d3313a4cf61d8333a1970e8c5d8b6/build.log` Installation completed after 93.66s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: WGLMakie Failed to precompile WGLMakie [276b4fcb-3e11-5398-bf8b-a0c2d153d008] to "/home/pkgeval/.julia/compiled/v1.10/WGLMakie/jl_Py7LPB". julia: /source/src/subtype.c:4817: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [797] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/FUAHr/precompile/shared-precompile.jl:90 unknown function (ip: 0x71458e13cebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x71458e0d8394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4817 type_morespecific_ at /source/src/subtype.c:5075 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5185 type_morespecific_ at /source/src/subtype.c:5143 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5237 tuple_morespecific at /source/src/subtype.c:4879 [inlined] type_morespecific_ at /source/src/subtype.c:5061 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:222 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:213 unknown function (ip: 0x71456c3f5b5c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 Plot at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:273 unknown function (ip: 0x71456c3f4d6c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/figureplotting.jl:390 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#66 at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:512 poly! at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:510 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x71456c3e8395) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1511 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:398 _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:317 [inlined] #_block#1510 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:262 [inlined] _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:261 [inlined] #_#1508 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:240 [inlined] Block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:239 unknown function (ip: 0x71456c3e2a45) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:35 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:27 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 unknown function (ip: 0x71458d2a56e5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81383.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71458e0d9249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 99002316 (Pool: 98925595; Big: 76721); GC: 81 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_ruZVar". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/WGLMakie/LOBCu/src/WGLMakie.jl:1 in expression starting at stdin:4 MakieExt Failed to precompile MakieExt [0115a732-17b7-5fb0-9e65-1af4b6365f6f] to "/home/pkgeval/.julia/compiled/v1.10/MakieExt/jl_LwKR4W". julia: /source/src/subtype.c:4817: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [860] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/FUAHr/precompile/shared-precompile.jl:90 unknown function (ip: 0x73e4e11c7ebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x73e4e1163394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4817 type_morespecific_ at /source/src/subtype.c:5075 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5185 type_morespecific_ at /source/src/subtype.c:5143 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5237 tuple_morespecific at /source/src/subtype.c:4879 [inlined] type_morespecific_ at /source/src/subtype.c:5061 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:222 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:213 unknown function (ip: 0x73e4bf722c5c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 Plot at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:273 unknown function (ip: 0x73e4bf721e6c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/figureplotting.jl:390 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#66 at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:512 poly! at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:510 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x73e4bf715495) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1511 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:398 _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:317 [inlined] #_block#1510 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:262 [inlined] _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:261 [inlined] #_#1508 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:240 [inlined] Block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:239 unknown function (ip: 0x73e4bf70fb45) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:35 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:27 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 unknown function (ip: 0x73e4e032e4a5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81383.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73e4e1164249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 101757323 (Pool: 101665692; Big: 91631); GC: 91 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_aUGarV". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/WGLMakie/LOBCu/src/WGLMakie.jl:1 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile WGLMakie [276b4fcb-3e11-5398-bf8b-a0c2d153d008] to "/home/pkgeval/.julia/compiled/v1.10/WGLMakie/jl_sD52xz". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/ext/MakieExt.jl:3 in expression starting at stdin:4 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 988.57s ################################################################################ # Testing # Testing ISOKANN Status `/tmp/jl_V78j1L/Project.toml` [ec485272] ArnoldiMethod v0.4.0 [77b51b56] AverageShiftedHistograms v0.8.9 [de9282ab] BioStructures v4.5.0 [824d6782] Bonito v4.0.5 [052768ef] CUDA v5.8.2 [d360d2e6] ChainRulesCore v1.25.1 [46823bd8] Chemfiles v0.10.42 [861a8166] Combinatorics v1.0.3 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [587475ba] Flux v0.16.4 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [86223c79] Graphs v1.13.0 [512544ac] ISOKANN v1.2.0 [033835bb] JLD2 v0.5.13 [5ab0869b] KernelDensity v0.6.9 [2fda8390] LsqFit v0.15.1 [f1d291b0] MLUtils v0.4.8 [442fdcdd] Measures v0.3.2 [872c559c] NNlib v0.9.30 [429524aa] Optim v1.12.0 [3bd65402] Optimisers v0.4.6 [1dea7af3] OrdinaryDiffEq v6.98.0 [f48fc343] PCCAPlus v1.1.2 [d96e819e] Parameters v0.12.3 ⌃ [91a5bcdd] Plots v1.40.1 [92933f4c] ProgressMeter v1.10.4 [438e738f] PyCall v1.96.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [2913bbd2] StatsBase v0.34.5 [789caeaf] StochasticDiffEq v6.80.0 [b189fb0b] ThreadPools v2.1.1 [1986cc42] Unitful v1.22.1 [276b4fcb] WGLMakie v0.11.10 [e88e6eb3] Zygote v0.7.8 [02a925ec] cuDNN v1.4.3 [37e2e46d] LinearAlgebra [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [8dfed614] Test Status `/tmp/jl_V78j1L/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 [a963bdd2] AtomsBase v0.5.1 [67c07d97] Automa v1.1.0 [77b51b56] AverageShiftedHistograms v0.8.9 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.4 [18cc8868] BaseDirs v1.3.0 [9718e550] Baselet v0.1.1 [b99e7846] BinaryProvider v0.5.10 [47718e42] BioGenerics v0.1.5 [de9282ab] BioStructures v4.5.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [824d6782] Bonito v4.0.5 [70df07ce] BracketingNonlinearSolve v1.3.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [96374032] CRlibm v1.0.2 [052768ef] CUDA v5.8.2 [1af6417a] CUDA_Runtime_Discovery v0.3.5 [082447d4] ChainRules v1.72.4 [d360d2e6] ChainRulesCore v1.25.1 [46823bd8] Chemfiles v0.10.42 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.2 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.175.0 [459566f4] DiffEqCallbacks v4.6.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] 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Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Installing openmm via the Conda openmm package... [ Info: Running `conda config --add channels conda-forge --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml --force` in root environment /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic( [ Info: Running `conda install -q -y openmm` in root environment Channels: - conda-forge - defaults Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - openmm The following packages will be downloaded: package | build ---------------------------|----------------- cuda-nvrtc-12.9.86 | h5888daf_0 64.1 MB conda-forge cuda-version-12.9 | h4f385c5_3 21 KB conda-forge libcufft-11.4.1.4 | h5888daf_0 154.6 MB conda-forge ocl-icd-2.3.3 | hb9d3cd8_0 104 KB conda-forge ocl-icd-system-1.0.0 | 1 4 KB conda-forge opencl-headers-2024.10.24 | h5888daf_0 53 KB conda-forge openmm-8.2.0 | py312h7d5185f_3 11.3 MB conda-forge scipy-1.15.2 | py312ha707e6e_0 16.3 MB conda-forge ------------------------------------------------------------ Total: 246.4 MB The following NEW packages will be INSTALLED: cuda-nvrtc conda-forge/linux-64::cuda-nvrtc-12.9.86-h5888daf_0 cuda-version conda-forge/noarch::cuda-version-12.9-h4f385c5_3 libcufft conda-forge/linux-64::libcufft-11.4.1.4-h5888daf_0 ocl-icd conda-forge/linux-64::ocl-icd-2.3.3-hb9d3cd8_0 ocl-icd-system conda-forge/linux-64::ocl-icd-system-1.0.0-1 opencl-headers conda-forge/linux-64::opencl-headers-2024.10.24-h5888daf_0 openmm conda-forge/linux-64::openmm-8.2.0-py312h7d5185f_3 scipy conda-forge/linux-64::scipy-1.15.2-py312ha707e6e_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Installing openmmforcefields via the Conda openmmforcefields package... [ Info: Running `conda config --add channels conda-forge --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml --force` in root environment Warning: 'conda-forge' already in 'channels' list, moving to the top [ Info: Running `conda install -q -y openmmforcefields` in root environment Channels: - conda-forge - defaults Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - openmmforcefields The following packages will be downloaded: package | build ---------------------------|----------------- ambertools-24.8 |cuda_None_nompi_py312hbe1986e_101 97.2 MB conda-forge annotated-types-0.7.0 | pyhd8ed1ab_1 18 KB conda-forge anyio-4.9.0 | pyh29332c3_0 123 KB conda-forge argon2-cffi-25.1.0 | pyhd8ed1ab_0 18 KB conda-forge argon2-cffi-bindings-21.2.0| py312h66e93f0_5 34 KB conda-forge arpack-3.9.1 |nompi_hf03ea27_102 127 KB conda-forge arrow-1.3.0 | pyhd8ed1ab_1 98 KB conda-forge asttokens-3.0.0 | pyhd8ed1ab_1 28 KB conda-forge async-lru-2.0.5 | pyh29332c3_0 17 KB conda-forge attrs-25.3.0 | pyh71513ae_0 56 KB conda-forge babel-2.17.0 | pyhd8ed1ab_0 6.6 MB conda-forge beautifulsoup4-4.13.4 | pyha770c72_0 143 KB conda-forge blas-2.131 | openblas 16 KB conda-forge blas-devel-3.9.0 |31_h1ea3ea9_openblas 16 KB conda-forge bleach-6.2.0 | pyh29332c3_4 138 KB conda-forge bleach-with-css-6.2.0 | h82add2a_4 4 KB conda-forge blosc-1.21.6 | he440d0b_1 47 KB conda-forge brotli-1.1.0 | hb9d3cd8_2 19 KB conda-forge brotli-bin-1.1.0 | hb9d3cd8_2 18 KB conda-forge bson-0.5.10 | pyhd8ed1ab_0 16 KB conda-forge c-blosc2-2.17.1 | h3122c55_0 336 KB conda-forge cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge cachetools-6.0.0 | pyhd8ed1ab_0 16 KB conda-forge cairo-1.18.4 | h3394656_0 955 KB conda-forge chardet-5.2.0 | pyhd8ed1ab_3 129 KB conda-forge comm-0.2.2 | pyhd8ed1ab_1 12 KB conda-forge contourpy-1.3.2 | py312h68727a3_0 270 KB conda-forge cycler-0.12.1 | pyhd8ed1ab_1 13 KB conda-forge cyrus-sasl-2.1.27 | h54b06d7_7 214 KB conda-forge debugpy-1.8.14 | py312h2ec8cdc_0 2.5 MB conda-forge decorator-5.2.1 | pyhd8ed1ab_0 14 KB conda-forge defusedxml-0.7.1 | pyhd8ed1ab_0 23 KB conda-forge exceptiongroup-1.3.0 | pyhd8ed1ab_0 21 KB conda-forge executing-2.2.0 | pyhd8ed1ab_0 29 KB conda-forge fftw-3.3.10 |nompi_hf1063bd_110 2.0 MB conda-forge flexcache-0.3 | pyhd8ed1ab_1 16 KB conda-forge flexparser-0.4 | pyhd8ed1ab_1 28 KB conda-forge font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge font-ttf-ubuntu-0.83 | h77eed37_3 1.5 MB conda-forge fontconfig-2.15.0 | h7e30c49_1 259 KB conda-forge fonts-conda-ecosystem-1 | 0 4 KB conda-forge fonts-conda-forge-1 | 0 4 KB conda-forge fonttools-4.58.2 | py312h178313f_0 2.7 MB conda-forge fqdn-1.5.1 | pyhd8ed1ab_1 16 KB conda-forge freetype-2.13.3 | ha770c72_1 168 KB conda-forge freetype-py-2.3.0 | pyhd8ed1ab_0 58 KB conda-forge greenlet-3.2.3 | py312h2ec8cdc_0 231 KB conda-forge h11-0.16.0 | pyhd8ed1ab_0 37 KB conda-forge hdf4-4.2.15 | h2a13503_7 739 KB conda-forge hdf5-1.14.6 |nompi_h2d575fe_101 3.5 MB conda-forge httpcore-1.0.9 | pyh29332c3_0 48 KB conda-forge httpx-0.28.1 | pyhd8ed1ab_0 62 KB conda-forge importlib-metadata-8.7.0 | pyhe01879c_1 34 KB conda-forge importlib_resources-6.5.2 | pyhd8ed1ab_0 33 KB conda-forge intel-openmp-2022.0.1 | h06a4308_3633 4.2 MB ipykernel-6.29.5 | pyh3099207_0 116 KB conda-forge ipython-9.3.0 | pyhfa0c392_0 607 KB conda-forge ipython_pygments_lexers-1.1.1| pyhd8ed1ab_0 14 KB conda-forge ipywidgets-8.1.7 | pyhd8ed1ab_0 112 KB conda-forge isoduration-20.11.0 | pyhd8ed1ab_1 19 KB conda-forge jedi-0.19.2 | pyhd8ed1ab_1 824 KB conda-forge jinja2-3.1.6 | pyhd8ed1ab_0 110 KB conda-forge joblib-1.5.1 | pyhd8ed1ab_0 219 KB conda-forge json5-0.12.0 | pyhd8ed1ab_0 33 KB conda-forge jsonschema-4.24.0 | pyhd8ed1ab_0 73 KB conda-forge jsonschema-specifications-2025.4.1| pyh29332c3_0 19 KB conda-forge jsonschema-with-format-nongpl-4.24.0| hd8ed1ab_0 8 KB conda-forge jupyter-lsp-2.2.5 | pyhe01879c_2 56 KB conda-forge jupyter_client-8.6.3 | pyhd8ed1ab_1 104 KB conda-forge jupyter_core-5.8.1 | pyh31011fe_0 58 KB conda-forge jupyter_events-0.12.0 | pyh29332c3_0 23 KB conda-forge jupyter_server-2.16.0 | pyhe01879c_0 336 KB conda-forge jupyter_server_terminals-0.5.3| pyhd8ed1ab_1 19 KB conda-forge jupyterlab-4.4.3 | pyhd8ed1ab_0 7.9 MB conda-forge jupyterlab_pygments-0.3.0 | pyhd8ed1ab_2 18 KB conda-forge jupyterlab_server-2.27.3 | pyhd8ed1ab_1 48 KB conda-forge jupyterlab_widgets-3.0.15 | pyhd8ed1ab_0 185 KB conda-forge kiwisolver-1.4.8 | py312h84d6215_0 70 KB conda-forge lcms2-2.17 | h717163a_0 242 KB conda-forge lerc-4.0.0 | h0aef613_1 258 KB conda-forge libaec-1.1.3 | h59595ed_0 35 KB conda-forge libboost-1.86.0 | h6c02f8c_3 2.8 MB conda-forge libboost-python-1.86.0 | py312hc39e661_3 120 KB conda-forge libbrotlicommon-1.1.0 | hb9d3cd8_2 67 KB conda-forge libbrotlidec-1.1.0 | hb9d3cd8_2 32 KB conda-forge libbrotlienc-1.1.0 | hb9d3cd8_2 275 KB conda-forge libdeflate-1.24 | h86f0d12_0 71 KB conda-forge libfreetype-2.13.3 | ha770c72_1 8 KB conda-forge libfreetype6-2.13.3 | h48d6fc4_1 371 KB conda-forge libgfortran-ng-15.1.0 | h69a702a_2 34 KB conda-forge libglib-2.84.2 | h3618099_0 3.8 MB conda-forge libjpeg-turbo-3.1.0 | hb9d3cd8_0 614 KB conda-forge liblapacke-3.9.0 |31_he2f377e_openblas 16 KB conda-forge libnetcdf-4.9.2 |nompi_h0134ee8_117 816 KB conda-forge libntlm-1.8 | hb9d3cd8_0 33 KB conda-forge libpng-1.6.47 | h943b412_0 282 KB conda-forge libpq-17.5 | h27ae623_0 2.6 MB conda-forge librdkit-2025.03.3 | h84b0b3c_0 8.8 MB conda-forge libsodium-1.0.20 | h4ab18f5_0 201 KB conda-forge libtiff-4.7.0 | hf01ce69_5 420 KB conda-forge libwebp-base-1.5.0 | h851e524_0 420 KB conda-forge libxcb-1.17.0 | h8a09558_0 387 KB conda-forge libxslt-1.1.39 | h76b75d6_0 248 KB conda-forge libzip-1.11.2 | h6991a6a_0 106 KB conda-forge lxml-5.4.0 | py312h68d7fa5_0 1.3 MB conda-forge markupsafe-3.0.2 | py312h178313f_1 24 KB conda-forge matplotlib-base-3.10.3 | py312hd3ec401_0 7.8 MB conda-forge matplotlib-inline-0.1.7 | pyhd8ed1ab_1 14 KB conda-forge mda-xdrlib-0.2.0 | pyhd8ed1ab_1 16 KB conda-forge mdtraj-1.10.3 | py312h71c6f2c_0 1.5 MB conda-forge mistune-3.1.3 | pyh29332c3_0 71 KB conda-forge mkl-2022.1.0 | hc2b9512_224 129.7 MB munkres-1.1.4 | pyh9f0ad1d_0 12 KB conda-forge nbclient-0.10.2 | pyhd8ed1ab_0 27 KB conda-forge nbconvert-core-7.16.6 | pyh29332c3_0 196 KB conda-forge nbformat-5.10.4 | pyhd8ed1ab_1 99 KB conda-forge nest-asyncio-1.6.0 | pyhd8ed1ab_1 11 KB conda-forge netcdf-fortran-4.6.2 |nompi_hee1cade_100 436 KB conda-forge networkx-3.5 | pyhe01879c_0 1.5 MB conda-forge nomkl-3.0 | 0 46 KB notebook-7.4.3 | pyhd8ed1ab_0 10.1 MB conda-forge notebook-shim-0.2.4 | pyhd8ed1ab_1 16 KB conda-forge numexpr-2.10.2 |py312h6a710ac_100 191 KB conda-forge openblas-0.3.29 |pthreads_h6ec200e_0 5.8 MB conda-forge openff-amber-ff-ports-0.0.4| pyhca7485f_0 182 KB conda-forge openff-forcefields-2024.09.0| pyhff2d567_0 95 KB conda-forge openff-interchange-0.4.2 | pyhd8ed1ab_2 8 KB conda-forge openff-interchange-base-0.4.2| pyhd8ed1ab_2 675 KB conda-forge openff-toolkit-0.16.9 | pyhd8ed1ab_0 9 KB conda-forge openff-toolkit-base-0.16.9 | pyhd8ed1ab_0 7.7 MB conda-forge openff-units-0.3.1 | pyhd8ed1ab_1 28 KB conda-forge openff-utilities-0.1.15 | pyhd8ed1ab_0 18 KB conda-forge openjpeg-2.5.3 | h5fbd93e_0 335 KB conda-forge openldap-2.6.10 | he970967_0 762 KB conda-forge openmmforcefields-0.14.2 | pyhd8ed1ab_0 2.3 MB conda-forge overrides-7.7.0 | pyhd8ed1ab_1 29 KB conda-forge pandas-2.3.0 | py312hf9745cd_0 14.3 MB conda-forge pandocfilters-1.5.0 | pyhd8ed1ab_0 11 KB conda-forge panedr-0.8.0 | pyhd8ed1ab_1 29 KB conda-forge parmed-4.3.0 | py312ha9124a0_1 18.5 MB conda-forge parso-0.8.4 | pyhd8ed1ab_1 74 KB conda-forge pcre2-10.45 | hc749103_0 1.1 MB conda-forge perl-5.32.1 | 7_hd590300_perl5 12.7 MB conda-forge pexpect-4.9.0 | pyhd8ed1ab_1 52 KB conda-forge pickleshare-0.7.5 | pyhd8ed1ab_1004 11 KB conda-forge pillow-11.2.1 | py312h80c1187_0 40.5 MB conda-forge pint-0.24.4 | pyhd8ed1ab_1 225 KB conda-forge pixman-0.46.0 | h29eaf8c_0 389 KB conda-forge pkgutil-resolve-name-1.3.10| pyhd8ed1ab_2 10 KB conda-forge prometheus_client-0.22.1 | pyhd8ed1ab_0 51 KB conda-forge prompt-toolkit-3.0.51 | pyha770c72_0 265 KB conda-forge psutil-7.0.0 | py312h66e93f0_0 455 KB conda-forge pthread-stubs-0.4 | hb9d3cd8_1002 8 KB conda-forge ptyprocess-0.7.0 | pyhd8ed1ab_1 19 KB conda-forge pure_eval-0.2.3 | pyhd8ed1ab_1 16 KB conda-forge py-cpuinfo-9.0.0 | pyhd8ed1ab_1 25 KB conda-forge pycairo-1.28.0 | py312hac037c1_0 115 KB conda-forge pydantic-2.11.4 | pyh3cfb1c2_0 299 KB conda-forge pydantic-core-2.33.2 | py312h680f630_0 1.8 MB conda-forge pyedr-0.8.0 | pyhd8ed1ab_1 337 KB conda-forge pygments-2.19.1 | pyhd8ed1ab_0 868 KB conda-forge pyparsing-3.2.3 | pyhd8ed1ab_1 94 KB conda-forge pytables-3.10.2 | py312h4f06452_4 1.6 MB conda-forge python-constraint-1.4.0 | pyhff2d567_1 26 KB conda-forge python-dateutil-2.9.0.post0| pyhff2d567_1 217 KB conda-forge python-fastjsonschema-2.21.1| pyhd8ed1ab_0 221 KB conda-forge python-json-logger-2.0.7 | pyhd8ed1ab_0 13 KB conda-forge python-tzdata-2025.2 | pyhd8ed1ab_0 141 KB conda-forge pytz-2025.2 | pyhd8ed1ab_0 185 KB conda-forge pyyaml-6.0.2 | py312h178313f_2 202 KB conda-forge pyzmq-26.4.0 | py312hbf22597_0 371 KB conda-forge qhull-2020.2 | h434a139_5 540 KB conda-forge rdkit-2025.03.3 | py312h07adbc5_0 19.1 MB conda-forge referencing-0.36.2 | pyh29332c3_0 50 KB conda-forge reportlab-4.4.1 | py312h66e93f0_0 2.6 MB conda-forge rfc3339-validator-0.1.4 | pyhd8ed1ab_1 10 KB conda-forge rfc3986-validator-0.1.1 | pyh9f0ad1d_0 8 KB conda-forge rlpycairo-0.2.0 | pyhd8ed1ab_0 15 KB conda-forge rpds-py-0.25.1 | py312h680f630_0 383 KB conda-forge send2trash-1.8.3 | pyh0d859eb_1 22 KB conda-forge six-1.17.0 | pyhd8ed1ab_0 16 KB conda-forge smirnoff99frosst-1.1.0 | pyh44b312d_0 34 KB conda-forge snappy-1.2.1 | h8bd8927_1 42 KB conda-forge sniffio-1.3.1 | pyhd8ed1ab_1 15 KB conda-forge soupsieve-2.7 | pyhd8ed1ab_0 37 KB conda-forge sqlalchemy-2.0.41 | py312h66e93f0_0 3.3 MB conda-forge stack_data-0.6.3 | pyhd8ed1ab_1 26 KB conda-forge terminado-0.18.1 | pyh0d859eb_0 22 KB conda-forge tinycss2-1.4.0 | pyhd8ed1ab_0 28 KB conda-forge tinydb-4.8.2 | pyhd8ed1ab_1 27 KB conda-forge tomli-2.2.1 | pyhd8ed1ab_1 19 KB conda-forge tornado-6.5.1 | py312h66e93f0_0 831 KB conda-forge traitlets-5.14.3 | pyhd8ed1ab_1 107 KB conda-forge types-python-dateutil-2.9.0.20250516| pyhd8ed1ab_0 22 KB conda-forge typing-extensions-4.14.0 | h32cad80_0 88 KB conda-forge typing-inspection-0.4.1 | pyhd8ed1ab_0 18 KB conda-forge typing_extensions-4.14.0 | pyhe01879c_0 50 KB conda-forge typing_utils-0.1.0 | pyhd8ed1ab_1 15 KB conda-forge unicodedata2-16.0.0 | py312h66e93f0_0 395 KB conda-forge uri-template-1.3.0 | pyhd8ed1ab_1 23 KB conda-forge validators-0.35.0 | pyhd8ed1ab_0 39 KB conda-forge wcwidth-0.2.13 | pyhd8ed1ab_1 32 KB conda-forge webcolors-24.11.1 | pyhd8ed1ab_0 18 KB conda-forge webencodings-0.5.1 | pyhd8ed1ab_3 15 KB conda-forge websocket-client-1.8.0 | pyhd8ed1ab_1 46 KB conda-forge widgetsnbextension-4.0.14 | pyhd8ed1ab_0 868 KB conda-forge xmltodict-0.14.2 | pyhd8ed1ab_1 15 KB conda-forge xorg-libice-1.1.2 | hb9d3cd8_0 57 KB conda-forge xorg-libsm-1.2.6 | he73a12e_0 27 KB conda-forge xorg-libx11-1.8.12 | h4f16b4b_0 816 KB conda-forge xorg-libxau-1.0.12 | hb9d3cd8_0 14 KB conda-forge xorg-libxdmcp-1.1.5 | hb9d3cd8_0 19 KB conda-forge xorg-libxext-1.3.6 | hb9d3cd8_0 49 KB conda-forge xorg-libxrender-0.9.12 | hb9d3cd8_0 32 KB conda-forge xorg-libxt-1.3.1 | hb9d3cd8_0 371 KB conda-forge yaml-0.2.5 | h7f98852_2 87 KB conda-forge zeromq-4.3.5 | h3b0a872_7 328 KB conda-forge zipp-3.22.0 | pyhd8ed1ab_0 22 KB conda-forge zlib-1.3.1 | hb9d3cd8_2 90 KB conda-forge zlib-ng-2.2.4 | h7955e40_0 106 KB conda-forge ------------------------------------------------------------ Total: 456.6 MB The following NEW packages will be INSTALLED: ambertools conda-forge/linux-64::ambertools-24.8-cuda_None_nompi_py312hbe1986e_101 annotated-types conda-forge/noarch::annotated-types-0.7.0-pyhd8ed1ab_1 anyio conda-forge/noarch::anyio-4.9.0-pyh29332c3_0 argon2-cffi conda-forge/noarch::argon2-cffi-25.1.0-pyhd8ed1ab_0 argon2-cffi-bindi~ conda-forge/linux-64::argon2-cffi-bindings-21.2.0-py312h66e93f0_5 arpack conda-forge/linux-64::arpack-3.9.1-nompi_hf03ea27_102 arrow conda-forge/noarch::arrow-1.3.0-pyhd8ed1ab_1 asttokens conda-forge/noarch::asttokens-3.0.0-pyhd8ed1ab_1 async-lru conda-forge/noarch::async-lru-2.0.5-pyh29332c3_0 attrs conda-forge/noarch::attrs-25.3.0-pyh71513ae_0 babel conda-forge/noarch::babel-2.17.0-pyhd8ed1ab_0 beautifulsoup4 conda-forge/noarch::beautifulsoup4-4.13.4-pyha770c72_0 blas conda-forge/linux-64::blas-2.131-openblas blas-devel conda-forge/linux-64::blas-devel-3.9.0-31_h1ea3ea9_openblas bleach conda-forge/noarch::bleach-6.2.0-pyh29332c3_4 bleach-with-css conda-forge/noarch::bleach-with-css-6.2.0-h82add2a_4 blosc conda-forge/linux-64::blosc-1.21.6-he440d0b_1 brotli conda-forge/linux-64::brotli-1.1.0-hb9d3cd8_2 brotli-bin conda-forge/linux-64::brotli-bin-1.1.0-hb9d3cd8_2 bson conda-forge/noarch::bson-0.5.10-pyhd8ed1ab_0 c-blosc2 conda-forge/linux-64::c-blosc2-2.17.1-h3122c55_0 cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1 cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1 cachetools conda-forge/noarch::cachetools-6.0.0-pyhd8ed1ab_0 cairo conda-forge/linux-64::cairo-1.18.4-h3394656_0 chardet conda-forge/noarch::chardet-5.2.0-pyhd8ed1ab_3 comm conda-forge/noarch::comm-0.2.2-pyhd8ed1ab_1 contourpy conda-forge/linux-64::contourpy-1.3.2-py312h68727a3_0 cycler conda-forge/noarch::cycler-0.12.1-pyhd8ed1ab_1 cyrus-sasl conda-forge/linux-64::cyrus-sasl-2.1.27-h54b06d7_7 debugpy conda-forge/linux-64::debugpy-1.8.14-py312h2ec8cdc_0 decorator conda-forge/noarch::decorator-5.2.1-pyhd8ed1ab_0 defusedxml conda-forge/noarch::defusedxml-0.7.1-pyhd8ed1ab_0 exceptiongroup conda-forge/noarch::exceptiongroup-1.3.0-pyhd8ed1ab_0 executing conda-forge/noarch::executing-2.2.0-pyhd8ed1ab_0 fftw conda-forge/linux-64::fftw-3.3.10-nompi_hf1063bd_110 flexcache conda-forge/noarch::flexcache-0.3-pyhd8ed1ab_1 flexparser conda-forge/noarch::flexparser-0.4-pyhd8ed1ab_1 font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-h77eed37_3 fontconfig conda-forge/linux-64::fontconfig-2.15.0-h7e30c49_1 fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-0 fonttools conda-forge/linux-64::fonttools-4.58.2-py312h178313f_0 fqdn conda-forge/noarch::fqdn-1.5.1-pyhd8ed1ab_1 freetype conda-forge/linux-64::freetype-2.13.3-ha770c72_1 freetype-py conda-forge/noarch::freetype-py-2.3.0-pyhd8ed1ab_0 greenlet conda-forge/linux-64::greenlet-3.2.3-py312h2ec8cdc_0 h11 conda-forge/noarch::h11-0.16.0-pyhd8ed1ab_0 hdf4 conda-forge/linux-64::hdf4-4.2.15-h2a13503_7 hdf5 conda-forge/linux-64::hdf5-1.14.6-nompi_h2d575fe_101 httpcore conda-forge/noarch::httpcore-1.0.9-pyh29332c3_0 httpx conda-forge/noarch::httpx-0.28.1-pyhd8ed1ab_0 importlib-metadata conda-forge/noarch::importlib-metadata-8.7.0-pyhe01879c_1 importlib_resourc~ conda-forge/noarch::importlib_resources-6.5.2-pyhd8ed1ab_0 intel-openmp pkgs/main/linux-64::intel-openmp-2022.0.1-h06a4308_3633 ipykernel conda-forge/noarch::ipykernel-6.29.5-pyh3099207_0 ipython conda-forge/noarch::ipython-9.3.0-pyhfa0c392_0 ipython_pygments_~ conda-forge/noarch::ipython_pygments_lexers-1.1.1-pyhd8ed1ab_0 ipywidgets conda-forge/noarch::ipywidgets-8.1.7-pyhd8ed1ab_0 isoduration conda-forge/noarch::isoduration-20.11.0-pyhd8ed1ab_1 jedi conda-forge/noarch::jedi-0.19.2-pyhd8ed1ab_1 jinja2 conda-forge/noarch::jinja2-3.1.6-pyhd8ed1ab_0 joblib conda-forge/noarch::joblib-1.5.1-pyhd8ed1ab_0 json5 conda-forge/noarch::json5-0.12.0-pyhd8ed1ab_0 jsonschema conda-forge/noarch::jsonschema-4.24.0-pyhd8ed1ab_0 jsonschema-specif~ conda-forge/noarch::jsonschema-specifications-2025.4.1-pyh29332c3_0 jsonschema-with-f~ conda-forge/noarch::jsonschema-with-format-nongpl-4.24.0-hd8ed1ab_0 jupyter-lsp conda-forge/noarch::jupyter-lsp-2.2.5-pyhe01879c_2 jupyter_client conda-forge/noarch::jupyter_client-8.6.3-pyhd8ed1ab_1 jupyter_core conda-forge/noarch::jupyter_core-5.8.1-pyh31011fe_0 jupyter_events conda-forge/noarch::jupyter_events-0.12.0-pyh29332c3_0 jupyter_server conda-forge/noarch::jupyter_server-2.16.0-pyhe01879c_0 jupyter_server_te~ conda-forge/noarch::jupyter_server_terminals-0.5.3-pyhd8ed1ab_1 jupyterlab conda-forge/noarch::jupyterlab-4.4.3-pyhd8ed1ab_0 jupyterlab_pygmen~ conda-forge/noarch::jupyterlab_pygments-0.3.0-pyhd8ed1ab_2 jupyterlab_server conda-forge/noarch::jupyterlab_server-2.27.3-pyhd8ed1ab_1 jupyterlab_widgets conda-forge/noarch::jupyterlab_widgets-3.0.15-pyhd8ed1ab_0 kiwisolver conda-forge/linux-64::kiwisolver-1.4.8-py312h84d6215_0 lcms2 conda-forge/linux-64::lcms2-2.17-h717163a_0 lerc conda-forge/linux-64::lerc-4.0.0-h0aef613_1 libaec conda-forge/linux-64::libaec-1.1.3-h59595ed_0 libboost conda-forge/linux-64::libboost-1.86.0-h6c02f8c_3 libboost-python conda-forge/linux-64::libboost-python-1.86.0-py312hc39e661_3 libbrotlicommon conda-forge/linux-64::libbrotlicommon-1.1.0-hb9d3cd8_2 libbrotlidec conda-forge/linux-64::libbrotlidec-1.1.0-hb9d3cd8_2 libbrotlienc conda-forge/linux-64::libbrotlienc-1.1.0-hb9d3cd8_2 libdeflate conda-forge/linux-64::libdeflate-1.24-h86f0d12_0 libfreetype conda-forge/linux-64::libfreetype-2.13.3-ha770c72_1 libfreetype6 conda-forge/linux-64::libfreetype6-2.13.3-h48d6fc4_1 libgfortran-ng conda-forge/linux-64::libgfortran-ng-15.1.0-h69a702a_2 libglib conda-forge/linux-64::libglib-2.84.2-h3618099_0 libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.1.0-hb9d3cd8_0 liblapacke conda-forge/linux-64::liblapacke-3.9.0-31_he2f377e_openblas libnetcdf conda-forge/linux-64::libnetcdf-4.9.2-nompi_h0134ee8_117 libntlm conda-forge/linux-64::libntlm-1.8-hb9d3cd8_0 libpng conda-forge/linux-64::libpng-1.6.47-h943b412_0 libpq conda-forge/linux-64::libpq-17.5-h27ae623_0 librdkit conda-forge/linux-64::librdkit-2025.03.3-h84b0b3c_0 libsodium conda-forge/linux-64::libsodium-1.0.20-h4ab18f5_0 libtiff conda-forge/linux-64::libtiff-4.7.0-hf01ce69_5 libwebp-base conda-forge/linux-64::libwebp-base-1.5.0-h851e524_0 libxcb conda-forge/linux-64::libxcb-1.17.0-h8a09558_0 libxslt conda-forge/linux-64::libxslt-1.1.39-h76b75d6_0 libzip conda-forge/linux-64::libzip-1.11.2-h6991a6a_0 lxml conda-forge/linux-64::lxml-5.4.0-py312h68d7fa5_0 markupsafe conda-forge/linux-64::markupsafe-3.0.2-py312h178313f_1 matplotlib-base conda-forge/linux-64::matplotlib-base-3.10.3-py312hd3ec401_0 matplotlib-inline conda-forge/noarch::matplotlib-inline-0.1.7-pyhd8ed1ab_1 mda-xdrlib conda-forge/noarch::mda-xdrlib-0.2.0-pyhd8ed1ab_1 mdtraj conda-forge/linux-64::mdtraj-1.10.3-py312h71c6f2c_0 mistune conda-forge/noarch::mistune-3.1.3-pyh29332c3_0 mkl pkgs/main/linux-64::mkl-2022.1.0-hc2b9512_224 munkres conda-forge/noarch::munkres-1.1.4-pyh9f0ad1d_0 nbclient conda-forge/noarch::nbclient-0.10.2-pyhd8ed1ab_0 nbconvert-core conda-forge/noarch::nbconvert-core-7.16.6-pyh29332c3_0 nbformat conda-forge/noarch::nbformat-5.10.4-pyhd8ed1ab_1 nest-asyncio conda-forge/noarch::nest-asyncio-1.6.0-pyhd8ed1ab_1 netcdf-fortran conda-forge/linux-64::netcdf-fortran-4.6.2-nompi_hee1cade_100 networkx conda-forge/noarch::networkx-3.5-pyhe01879c_0 nomkl pkgs/main/linux-64::nomkl-3.0-0 notebook conda-forge/noarch::notebook-7.4.3-pyhd8ed1ab_0 notebook-shim conda-forge/noarch::notebook-shim-0.2.4-pyhd8ed1ab_1 numexpr conda-forge/linux-64::numexpr-2.10.2-py312h6a710ac_100 openblas conda-forge/linux-64::openblas-0.3.29-pthreads_h6ec200e_0 openff-amber-ff-p~ conda-forge/noarch::openff-amber-ff-ports-0.0.4-pyhca7485f_0 openff-forcefields conda-forge/noarch::openff-forcefields-2024.09.0-pyhff2d567_0 openff-interchange conda-forge/noarch::openff-interchange-0.4.2-pyhd8ed1ab_2 openff-interchang~ conda-forge/noarch::openff-interchange-base-0.4.2-pyhd8ed1ab_2 openff-toolkit conda-forge/noarch::openff-toolkit-0.16.9-pyhd8ed1ab_0 openff-toolkit-ba~ conda-forge/noarch::openff-toolkit-base-0.16.9-pyhd8ed1ab_0 openff-units conda-forge/noarch::openff-units-0.3.1-pyhd8ed1ab_1 openff-utilities conda-forge/noarch::openff-utilities-0.1.15-pyhd8ed1ab_0 openjpeg conda-forge/linux-64::openjpeg-2.5.3-h5fbd93e_0 openldap conda-forge/linux-64::openldap-2.6.10-he970967_0 openmmforcefields conda-forge/noarch::openmmforcefields-0.14.2-pyhd8ed1ab_0 overrides conda-forge/noarch::overrides-7.7.0-pyhd8ed1ab_1 pandas conda-forge/linux-64::pandas-2.3.0-py312hf9745cd_0 pandocfilters conda-forge/noarch::pandocfilters-1.5.0-pyhd8ed1ab_0 panedr conda-forge/noarch::panedr-0.8.0-pyhd8ed1ab_1 parmed conda-forge/linux-64::parmed-4.3.0-py312ha9124a0_1 parso conda-forge/noarch::parso-0.8.4-pyhd8ed1ab_1 pcre2 conda-forge/linux-64::pcre2-10.45-hc749103_0 perl conda-forge/linux-64::perl-5.32.1-7_hd590300_perl5 pexpect conda-forge/noarch::pexpect-4.9.0-pyhd8ed1ab_1 pickleshare conda-forge/noarch::pickleshare-0.7.5-pyhd8ed1ab_1004 pillow conda-forge/linux-64::pillow-11.2.1-py312h80c1187_0 pint conda-forge/noarch::pint-0.24.4-pyhd8ed1ab_1 pixman conda-forge/linux-64::pixman-0.46.0-h29eaf8c_0 pkgutil-resolve-n~ conda-forge/noarch::pkgutil-resolve-name-1.3.10-pyhd8ed1ab_2 prometheus_client conda-forge/noarch::prometheus_client-0.22.1-pyhd8ed1ab_0 prompt-toolkit conda-forge/noarch::prompt-toolkit-3.0.51-pyha770c72_0 psutil conda-forge/linux-64::psutil-7.0.0-py312h66e93f0_0 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-hb9d3cd8_1002 ptyprocess conda-forge/noarch::ptyprocess-0.7.0-pyhd8ed1ab_1 pure_eval conda-forge/noarch::pure_eval-0.2.3-pyhd8ed1ab_1 py-cpuinfo conda-forge/noarch::py-cpuinfo-9.0.0-pyhd8ed1ab_1 pycairo conda-forge/linux-64::pycairo-1.28.0-py312hac037c1_0 pydantic conda-forge/noarch::pydantic-2.11.4-pyh3cfb1c2_0 pydantic-core conda-forge/linux-64::pydantic-core-2.33.2-py312h680f630_0 pyedr conda-forge/noarch::pyedr-0.8.0-pyhd8ed1ab_1 pygments conda-forge/noarch::pygments-2.19.1-pyhd8ed1ab_0 pyparsing conda-forge/noarch::pyparsing-3.2.3-pyhd8ed1ab_1 pytables conda-forge/linux-64::pytables-3.10.2-py312h4f06452_4 python-constraint conda-forge/noarch::python-constraint-1.4.0-pyhff2d567_1 python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_1 python-fastjsonsc~ conda-forge/noarch::python-fastjsonschema-2.21.1-pyhd8ed1ab_0 python-json-logger conda-forge/noarch::python-json-logger-2.0.7-pyhd8ed1ab_0 python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0 pytz conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0 pyyaml conda-forge/linux-64::pyyaml-6.0.2-py312h178313f_2 pyzmq conda-forge/linux-64::pyzmq-26.4.0-py312hbf22597_0 qhull conda-forge/linux-64::qhull-2020.2-h434a139_5 rdkit conda-forge/linux-64::rdkit-2025.03.3-py312h07adbc5_0 referencing conda-forge/noarch::referencing-0.36.2-pyh29332c3_0 reportlab conda-forge/linux-64::reportlab-4.4.1-py312h66e93f0_0 rfc3339-validator conda-forge/noarch::rfc3339-validator-0.1.4-pyhd8ed1ab_1 rfc3986-validator conda-forge/noarch::rfc3986-validator-0.1.1-pyh9f0ad1d_0 rlpycairo conda-forge/noarch::rlpycairo-0.2.0-pyhd8ed1ab_0 rpds-py conda-forge/linux-64::rpds-py-0.25.1-py312h680f630_0 send2trash conda-forge/noarch::send2trash-1.8.3-pyh0d859eb_1 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 smirnoff99frosst conda-forge/noarch::smirnoff99frosst-1.1.0-pyh44b312d_0 snappy conda-forge/linux-64::snappy-1.2.1-h8bd8927_1 sniffio conda-forge/noarch::sniffio-1.3.1-pyhd8ed1ab_1 soupsieve conda-forge/noarch::soupsieve-2.7-pyhd8ed1ab_0 sqlalchemy conda-forge/linux-64::sqlalchemy-2.0.41-py312h66e93f0_0 stack_data conda-forge/noarch::stack_data-0.6.3-pyhd8ed1ab_1 terminado conda-forge/noarch::terminado-0.18.1-pyh0d859eb_0 tinycss2 conda-forge/noarch::tinycss2-1.4.0-pyhd8ed1ab_0 tinydb conda-forge/noarch::tinydb-4.8.2-pyhd8ed1ab_1 tomli conda-forge/noarch::tomli-2.2.1-pyhd8ed1ab_1 tornado conda-forge/linux-64::tornado-6.5.1-py312h66e93f0_0 traitlets conda-forge/noarch::traitlets-5.14.3-pyhd8ed1ab_1 types-python-date~ conda-forge/noarch::types-python-dateutil-2.9.0.20250516-pyhd8ed1ab_0 typing-extensions conda-forge/noarch::typing-extensions-4.14.0-h32cad80_0 typing-inspection conda-forge/noarch::typing-inspection-0.4.1-pyhd8ed1ab_0 typing_extensions conda-forge/noarch::typing_extensions-4.14.0-pyhe01879c_0 typing_utils conda-forge/noarch::typing_utils-0.1.0-pyhd8ed1ab_1 unicodedata2 conda-forge/linux-64::unicodedata2-16.0.0-py312h66e93f0_0 uri-template conda-forge/noarch::uri-template-1.3.0-pyhd8ed1ab_1 validators conda-forge/noarch::validators-0.35.0-pyhd8ed1ab_0 wcwidth conda-forge/noarch::wcwidth-0.2.13-pyhd8ed1ab_1 webcolors conda-forge/noarch::webcolors-24.11.1-pyhd8ed1ab_0 webencodings conda-forge/noarch::webencodings-0.5.1-pyhd8ed1ab_3 websocket-client conda-forge/noarch::websocket-client-1.8.0-pyhd8ed1ab_1 widgetsnbextension conda-forge/noarch::widgetsnbextension-4.0.14-pyhd8ed1ab_0 xmltodict conda-forge/noarch::xmltodict-0.14.2-pyhd8ed1ab_1 xorg-libice conda-forge/linux-64::xorg-libice-1.1.2-hb9d3cd8_0 xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.6-he73a12e_0 xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.12-h4f16b4b_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.12-hb9d3cd8_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.5-hb9d3cd8_0 xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.6-hb9d3cd8_0 xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.12-hb9d3cd8_0 xorg-libxt conda-forge/linux-64::xorg-libxt-1.3.1-hb9d3cd8_0 yaml conda-forge/linux-64::yaml-0.2.5-h7f98852_2 zeromq conda-forge/linux-64::zeromq-4.3.5-h3b0a872_7 zipp conda-forge/noarch::zipp-3.22.0-pyhd8ed1ab_0 zlib conda-forge/linux-64::zlib-1.3.1-hb9d3cd8_2 zlib-ng conda-forge/linux-64::zlib-ng-2.2.4-h7955e40_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: No functional GPU found. Skipping GPU tests ┌ Warning: `Progress(n::Integer, desc::AbstractString, offset::Integer = 0; kwargs...)` is deprecated, use `Progress(n; desc = desc, offset = offset, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1 Computing trajectory 20%|██████▎ | ETA: 0:00:01 simulated time: 0.0004 / 0.002 ns speed: 0.0033296940886842047 ns/s norm: 11.375244111539471       Computing trajectory 100%|███████████████████████████████| Time: 0:00:01 simulated time: 0.002 / 0.002 ns speed: 0.0036300934814957686 ns/s norm: 11.47209093093066 Propagating 20%|████████ | ETA: 0:00:01 Propagating 30%|████████████ | ETA: 0:00:01 Propagating 40%|████████████████ | ETA: 0:00:01 Propagating 50%|████████████████████ | ETA: 0:00:01 Propagating 60%|████████████████████████ | ETA: 0:00:01 Propagating 70%|████████████████████████████ | ETA: 0:00:00 Propagating 80%|████████████████████████████████ | ETA: 0:00:00 Propagating 90%|████████████████████████████████████ | ETA: 0:00:00 Propagating 100%|████████████████████████████████████████| Time: 0:00:01 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 941 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm15ValueHandleBase12AddToUseListEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm15SmallVectorImplINS_14WeakTrackingVHEE12emplace_backIJRPNS_11InstructionEEEERS1_DpOT_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm16InstCombinerImpl14visitAllocSiteERNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm16InstCombinerImpl15visitAllocaInstERNS_10AllocaInstE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm16InstCombinerImpl3runEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZL31combineInstructionsOverFunctionRN4llvm8FunctionERNS_19InstructionWorklistEPNS_9AAResultsERNS_15AssumptionCacheERNS_17TargetLibraryInfoERNS_19TargetTransformInfoERNS_13DominatorTreeERNS_25OptimizationRemarkEmitterEPNS_18BlockFrequencyInfoEPNS_18ProfileSummaryInfoEjPNS_8LoopInfoE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm15InstCombinePass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/src/pipeline.cpp:751 operator() at /source/src/jitlayers.cpp:1257 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&):: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1222 [inlined] CallImpl<(anonymous namespace)::OptimizerT> at /source/usr/include/llvm/ADT/FunctionExtras.h:222 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) emit at /source/src/jitlayers.cpp:724 _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession12dispatchTaskESt10unique_ptrINS0_4TaskESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1604 jl_add_to_ee at /source/src/jitlayers.cpp:2015 jl_add_to_ee at /source/src/jitlayers.cpp:1994 jl_add_to_ee at /source/src/jitlayers.cpp:1994 jl_add_to_ee at /source/src/jitlayers.cpp:1994 jl_add_to_ee at /source/src/jitlayers.cpp:1994 jl_add_to_ee at /source/src/jitlayers.cpp:1994 _jl_compile_codeinst at /source/src/jitlayers.cpp:276 jl_generate_fptr_impl at /source/src/jitlayers.cpp:528 jl_compile_method_internal at /source/src/gf.c:2481 [inlined] jl_compile_method_internal at /source/src/gf.c:2368 _jl_invoke at /source/src/gf.c:2887 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #run!#121 at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/src/iso.jl:77 run! at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/src/iso.jl:71 [inlined] run! at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/src/iso.jl:71 unknown function (ip: 0x7d4a0999b50c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 include at ./client.jl:494 [inlined] macro expansion at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/test/runtests.jl:15 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] macro expansion at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/test/runtests.jl:15 [inlined] macro expansion at ./timing.jl:279 [inlined] top-level scope at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/test/runtests.jl:269 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7d4a4387f125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d4a446d5249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: Layer with Float32 parameters got Float64 input. │ The input will be converted, but any earlier layers may be very slow. │ layer = Dense(231 => 38, σ) # 8_816 parameters │ summary(x) = "231×10 Matrix{Float64}" └ @ Flux ~/.julia/packages/Flux/9PibT/src/layers/stateless.jl:60 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74802.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x73a707be3330) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x73a707bdbdf5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x73a707bdbc20) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x73a707bdb4e0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x73a707bd7bd9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73a7089ed249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000073a6fb400010 Total snapshots: 230. Utilization: 0% ╎230 @Base/client.jl:557; _start() ╎ 230 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 230 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 230 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _pat… ╎ 230 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mo… ╎ 230 @Base/boot.jl:385; eval ╎ ╎ 230 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 230 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 230 @Pkg/src/API.jl:147; test ╎ ╎ 230 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 230 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 230 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec… ╎ ╎ ╎ 230 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 230 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 230 …rc/Operations.jl:1915; test ╎ ╎ ╎ 230 …rc/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 230 …c/Operations.jl:1759; kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 230 …c/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.… ╎ ╎ ╎ ╎ 230 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 230 @Base/file.jl:762; mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 230 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 230 …Operations.jl:1810; (::Pkg.Operations.var"#115#12… ╎ ╎ ╎ ╎ ╎ 230 …Operations.jl:1721; with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 230 …Operations.jl:1840; (::Pkg.Operations.var"#117#… ╎ ╎ ╎ ╎ ╎ 230 @Base/env.jl:257; withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 230 …perations.jl:1992; (::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ ╎ 230 …erations.jl:2048; subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 230 …/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 230 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 230 …ondition.jl:130; wait(c::Base.GenericCond… ╎ ╎ ╎ ╎ ╎ ╎ 230 …ase/task.jl:1008; wait() 229╎ ╎ ╎ ╎ ╎ ╎ ╎ 230 …ase/task.jl:999; poptask(W::Base.Intrus… [941] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/ISOKANN/VRqhW/test/workflow.jl:13 _ZN4llvm16InstCombinerImpl19foldAddWithConstantERNS_14BinaryOperatorE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm16InstCombinerImpl8visitAddERNS_14BinaryOperatorE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm16InstCombinerImpl3runEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZL31combineInstructionsOverFunctionRN4llvm8FunctionERNS_19InstructionWorklistEPNS_9AAResultsERNS_15AssumptionCacheERNS_17TargetLibraryInfoERNS_19TargetTransformInfoERNS_13DominatorTreeERNS_25OptimizationRemarkEmitterEPNS_18BlockFrequencyInfoEPNS_18ProfileSummaryInfoEjPNS_8LoopInfoE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZN4llvm15InstCombinePass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:88 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) PkgEval terminated after 2723.88s: test duration exceeded the time limit