Package evaluation of HDF5 on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T13:54:45.145 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.16s ################################################################################ # Installation # Installing HDF5... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [f67ccb44] + HDF5 v0.17.2 Updating `~/.julia/environments/v1.10/Manifest.toml` [34da2185] + Compat v4.16.0 [f67ccb44] + HDF5 v0.17.2 [692b3bcd] + JLLWrappers v1.7.0 [3da0fdf6] + MPIPreferences v0.1.11 [21216c6a] + Preferences v1.4.3 [ae029012] + Requires v1.3.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+2 [458c3c95] + OpenSSL_jll v3.5.0+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.2+1 [14a3606d] + MozillaCACerts_jll v2023.1.10 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Installation completed after 12.48s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 20.61s ################################################################################ # Testing # Testing HDF5 Status `/tmp/jl_0R80H6/Project.toml` [34da2185] Compat v4.16.0 [5789e2e9] FileIO v1.17.0 [f67ccb44] HDF5 v0.17.2 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [21216c6a] Preferences v1.4.3 [ae029012] Requires v1.3.1 [0234f1f7] HDF5_jll v1.14.6+0 [8bf52ea8] CRC32c [8ba89e20] Distributed [8f399da3] Libdl [37e2e46d] LinearAlgebra [a63ad114] Mmap [44cfe95a] Pkg v1.10.0 [de0858da] Printf [9a3f8284] Random [8dfed614] Test [cf7118a7] UUIDs Status `/tmp/jl_0R80H6/Manifest.toml` [34da2185] Compat v4.16.0 [ffbed154] DocStringExtensions v0.9.4 [5789e2e9] FileIO v1.17.0 [f67ccb44] HDF5 v0.17.2 [692b3bcd] JLLWrappers v1.7.0 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [eebad327] PkgVersion v0.3.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [ae029012] Requires v1.3.1 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.7+2 [458c3c95] OpenSSL_jll v3.5.0+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [8bf52ea8] CRC32c [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Resolving package versions... Updating `/tmp/jl_0R80H6/Project.toml` [c8ec2601] + H5Zblosc v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zblosc` [094576f2] + H5Zbzip2 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zbzip2` [eb20ec05] + H5Zlz4 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zlz4` [f6f2d980] + H5Zzstd v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zzstd` Updating `/tmp/jl_0R80H6/Manifest.toml` [a74b3585] + Blosc v0.7.3 ⌅ [fa961155] + CEnum v0.4.2 ⌅ [523fee87] + CodecBzip2 v0.7.2 [5ba52731] + CodecLz4 v0.4.6 ⌅ [6b39b394] + CodecZstd v0.7.2 [c8ec2601] + H5Zblosc v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zblosc` [094576f2] + H5Zbzip2 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zbzip2` [eb20ec05] + H5Zlz4 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zlz4` [f6f2d980] + H5Zzstd v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zzstd` ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_0R80H6/Project.toml` [51b4e782] + H5Zbitshuffle v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zbitshuffle` Updating `/tmp/jl_0R80H6/Manifest.toml` [51b4e782] + H5Zbitshuffle v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zbitshuffle` ⌅ [228fe19c] + bitshuffle_jll v0.4.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` [ Info: libhdf5 v1.14.6 ┌ Warning: `filter=(307, 0)` keyword option is deprecated, use `filters=(307, 0)` instead │ caller = setproperty!(p::HDF5.DatasetCreateProperties, name::Symbol, val::Tuple{Int32, Int64}) at properties.jl:59 └ @ HDF5 ~/.julia/packages/HDF5/Z859u/src/properties.jl:59 ┌ Warning: `append!(filters::Filters.FilterPipeline, extra::NTuple{N, Integer}) where N` is deprecated, use `append!(filters, [ExternalFilter(extra...)])` instead. │ caller = set_filters! at properties.jl:499 [inlined] └ @ Core ~/.julia/packages/HDF5/Z859u/src/properties.jl:499 Object API: Test Failed at /home/pkgeval/.julia/packages/HDF5/Z859u/test/objects.jl:19 Expression: API.h5o_exists_by_name(h5f, "noonian") Expected: HDF5.API.H5Error No exception thrown Stacktrace: [1] (::var"#413#415")(h5f::HDF5.File) @ Main ~/.julia/packages/HDF5/Z859u/test/objects.jl:19 [2] (::HDF5.var"#17#18"{HDF5.HDF5Context, @Kwargs{}, var"#413#415", HDF5.File})() @ HDF5 ~/.julia/packages/HDF5/Z859u/src/file.jl:101 [3] task_local_storage(body::HDF5.var"#17#18"{HDF5.HDF5Context, @Kwargs{}, var"#413#415", HDF5.File}, key::Symbol, val::HDF5.HDF5Context) @ Base ./task.jl:304 [4] h5open(::var"#413#415", ::String, ::Vararg{String}; context::HDF5.HDF5Context, pv::@Kwargs{}) @ HDF5 ~/.julia/packages/HDF5/Z859u/src/file.jl:96 [5] h5open(::Function, ::String, ::String) @ HDF5 ~/.julia/packages/HDF5/Z859u/src/file.jl:94 [6] macro expansion @ ~/.julia/packages/HDF5/Z859u/test/objects.jl:16 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [8] top-level scope @ ~/.julia/packages/HDF5/Z859u/test/objects.jl:6 Test Summary: | Pass Fail Broken Total Time HDF5.jl | 1563 1 3 1567 3m46.2s plain | 151 1 152 43.4s complex | 13 13 1.5s undefined and null | 4 4 0.1s abstract arrays | 2 2 1.5s empty and 0-size arrays | 39 39 1.4s generic read of native types | 17 17 1.1s show | 51 51 5.5s split1 | 13 13 0.4s haskey | 18 18 1.0s AbstractString | 51 51 11.9s opaque data | 7 7 2.3s FixedStrings and FixedArrays | 18 18 2.0s Object Exists | 8 8 0.2s HDF5 existance | 4 4 0.1s bounds | 2 2 0.3s create_dataset | 352 352 2.8s Strings | 8 8 1.7s h5a_iterate | 8 8 0.4s h5l_iterate | 8 8 0.4s h5dchunk_iter | 3 3 0.0s compound | 10 10 5.7s create_dataset (compound) | 4 4 1.0s write_compound | 27 27 3.7s custom | 6 6 1.0s reference | 6 6 0.6s Dataspaces | 95 95 1.0s Datatypes | 15 15 0.1s BlockRange | 35 35 0.5s hyperslab | 5 5 1.9s read 0-length arrays: issue #859 | None 0.4s attrs interface | 92 92 2.9s variable length strings | 1 1 0.2s readremote | 23 23 3.4s extend | 29 29 2.9s gc | 101 101 5.7s external | 6 6 0.3s swmr | 4 4 15.7s mmap | 9 9 2.6s properties | 46 1 47 3.2s filter | 81 81 17.2s Raw Chunk I/O | 80 80 8.6s fileio | 6 6 2.4s track order | 18 18 4.3s h5f_get_dset_no_attrs_hint | 6 6 0.5s non-allocating methods | 11 1 12 1.3s Compression Filter Unit Tests | 6 6 0.8s Object API | 37 1 38 3.1s virtual dataset | 5 5 1.5s mpio | 12 12 3.9s ros3 | 2 2 1.4s ERROR: LoadError: Some tests did not pass: 1563 passed, 1 failed, 0 errored, 3 broken. in expression starting at /home/pkgeval/.julia/packages/HDF5/Z859u/test/runtests.jl:34 Testing failed after 254.46s ERROR: LoadError: Package HDF5 errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 317.25s: package has test failures