Package evaluation of EpithelialDynamics1D on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T20:23:54.456 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.37s ################################################################################ # Installation # Installing EpithelialDynamics1D... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [ace8a2d7] + EpithelialDynamics1D v1.8.3 Updating `~/.julia/environments/v1.10/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.2.7 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [82cc6244] + DataInterpolations v4.8.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌃ [2b5f629d] + DiffEqBase v6.130.0 ⌅ [459566f4] + DiffEqCallbacks v2.36.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [ace8a2d7] + EpithelialDynamics1D v1.8.3 [e2ba6199] + ExprTools v0.1.10 ⌅ [7034ab61] + FastBroadcast v0.2.8 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 ⌃ [cfdabe9e] + FiniteVolumeMethod1D v1.1.3 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.4.12 ⌅ [46192b85] + GPUArraysCore v0.1.5 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [a903a81a] + MovingBoundaryProblems1D v1.0.3 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [d41bc354] + NLSolversBase v7.8.3 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 ⌃ [d236fae5] + PreallocationTools v0.4.24 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 ⌅ [0bca4576] + SciMLBase v1.98.1 ⌅ [c0aeaf25] + SciMLOperators v0.3.13 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 ⌅ [aedffcd0] + Static v0.8.10 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.4 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.10/CairoMakie/jl_Wtff8C". julia: /source/src/subtype.c:4817: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [135] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/FUAHr/precompile/shared-precompile.jl:90 unknown function (ip: 0x7a17dac37ebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7a17dabd3394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4817 type_morespecific_ at /source/src/subtype.c:5075 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5185 type_morespecific_ at /source/src/subtype.c:5143 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5237 tuple_morespecific at /source/src/subtype.c:4879 [inlined] type_morespecific_ at /source/src/subtype.c:5061 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:222 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:213 unknown function (ip: 0x7a17b8b2671c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 Plot at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:273 unknown function (ip: 0x7a17b8b2592c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/figureplotting.jl:390 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#66 at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:512 poly! at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:510 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x7a17b8b18f55) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1511 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:398 _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:317 [inlined] #_block#1510 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:262 [inlined] _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:261 [inlined] #_#1508 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:240 [inlined] Block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:239 unknown function (ip: 0x7a17b8b13605) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:35 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:27 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 unknown function (ip: 0x7a17d9dcb3a5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81383.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a17dabd4249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 99109702 (Pool: 99031987; Big: 77715); GC: 81 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_vpRIWw". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/Yu6dt/src/CairoMakie.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 581.59s ################################################################################ # Testing # Testing EpithelialDynamics1D ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_FGND6w/Project.toml` [13f3f980] CairoMakie v0.13.10 [38540f10] CommonSolve v0.2.4 ⌅ [82cc6244] DataInterpolations v4.8.0 ⌅ [459566f4] DiffEqCallbacks v2.35.0 [ace8a2d7] EpithelialDynamics1D v1.8.3 ⌃ [cfdabe9e] FiniteVolumeMethod1D v1.1.3 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [7ed4a6bd] LinearSolve v2.16.2 [a903a81a] MovingBoundaryProblems1D v1.0.3 ⌃ [1dea7af3] OrdinaryDiffEq v6.58.2 [324d217c] ReferenceTests v0.10.5 [1bc83da4] SafeTestsets v0.1.0 ⌅ [0bca4576] SciMLBase v1.98.1 [860ef19b] StableRNGs v1.0.3 [2913bbd2] StatsBase v0.34.5 ⌃ [9672c7b4] SteadyStateDiffEq v1.16.1 [37e2e46d] LinearAlgebra [9a3f8284] Random [2f01184e] SparseArrays v1.10.0 [8dfed614] Test Status `/tmp/jl_FGND6w/Manifest.toml` ⌅ [47edcb42] ADTypes v0.2.7 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] BaseDirs v1.3.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.13.10 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [82cc6244] DataInterpolations v4.8.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [927a84f5] DelaunayTriangulation v1.6.4 ⌃ [2b5f629d] DiffEqBase v6.130.0 ⌅ [459566f4] DiffEqCallbacks v2.35.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 ⌅ [f151be2c] EnzymeCore v0.6.6 [ace8a2d7] EpithelialDynamics1D v1.8.3 [429591f6] ExactPredicates v2.2.8 [d4d017d3] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. WARNING: Method definition isconstant(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:254 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:8. ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-2eee-2aa22c9a3cf1 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-2eee-2aa22c9a3cf1 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-2eee-2aa22c9a3cf1 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-2eee-2aa22c9a3cf1 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 Test Summary: | Pass Total Time Problem | 13 13 2.3s ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-c90b-0b38743ff7d1 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-2eee-2aa22c9a3cf1 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module LinearSolve with build ID ffffffff-ffff-ffff-2d3d-e0846a534c9e is missing from the cache. │ This may mean LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-c90b-0b38743ff7d1 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-c90b-0b38743ff7d1 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-c90b-0b38743ff7d1 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 Test Summary: | Pass Total Time Equations | 1447 1447 2m42.3s Test Summary: | Pass Total Time Proliferation | 20 20 5.0s ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-c90b-0b38743ff7d1 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2018 Test Summary: | Pass Total Time Uniform | 5 5 20.2s julia: /source/src/subtype.c:4817: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [319] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/FUAHr/precompile/shared-precompile.jl:90 unknown function (ip: 0x77ae9b8a4ebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x77ae9b840394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4817 type_morespecific_ at /source/src/subtype.c:5075 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5185 type_morespecific_ at /source/src/subtype.c:5143 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5237 tuple_morespecific at /source/src/subtype.c:4879 [inlined] type_morespecific_ at /source/src/subtype.c:5061 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:222 conversion_pipeline at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:213 unknown function (ip: 0x77ae7b5188bc) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 Plot at /home/pkgeval/.julia/packages/Makie/FUAHr/src/interfaces.jl:273 unknown function (ip: 0x77ae7b517adc) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/figureplotting.jl:390 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#66 at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:512 poly! at /home/pkgeval/.julia/packages/MakieCore/FHomX/src/recipes.jl:510 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x77ae7b50b155) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1511 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:398 _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:317 [inlined] #_block#1510 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:262 [inlined] _block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:261 [inlined] #_#1508 at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:240 [inlined] Block at /home/pkgeval/.julia/packages/Makie/FUAHr/src/makielayout/blocks.jl:239 unknown function (ip: 0x77ae7b505815) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:35 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/FUAHr/src/precompiles.jl:27 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/FUAHr/src/Makie.jl:1 unknown function (ip: 0x77ae9aa4d6a5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81383.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77ae9b841249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 101981771 (Pool: 101892175; Big: 89596); GC: 92 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_2lB4SQ". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/Yu6dt/src/CairoMakie.jl:1 in expression starting at stdin:4 Step Function: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.10/CairoMakie/jl_ua4vCC". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include(mod::Module, _path::String) @ Base ./Base.jl:495 [24] include(x::String) @ Main.var"##Step Function#7712" ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [25] macro expansion @ ~/.julia/packages/EpithelialDynamics1D/L1Pzd/test/runtests.jl:19 [inlined] [26] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [27] macro expansion @ ~/.julia/packages/EpithelialDynamics1D/L1Pzd/test/runtests.jl:19 [inlined] [28] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 [29] eval(m::Module, e::Any) @ Core ./boot.jl:385 [30] top-level scope @ ~/.julia/packages/EpithelialDynamics1D/L1Pzd/test/runtests.jl:28 [31] include(fname::String) @ Base.MainInclude ./client.jl:494 [32] top-level scope @ none:6 [33] eval @ ./boot.jl:385 [inlined] [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [35] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/EpithelialDynamics1D/L1Pzd/test/step_function.jl:8 Test Summary: | Error Total Time Step Function | 1 1 5m24.9s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EpithelialDynamics1D/L1Pzd/test/runtests.jl:18 Testing failed after 593.73s ERROR: LoadError: Package EpithelialDynamics1D errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 1209.77s: the process was aborted