Package evaluation of DiffEqParamEstim on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T20:48:55.280 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.82s ################################################################################ # Installation # Installing DiffEqParamEstim... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [1130ab10] + DiffEqParamEstim v2.2.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [49dc2e85] + Calculus v0.5.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [39dd38d3] + Dierckx v0.5.4 [2b5f629d] + DiffEqBase v6.175.0 [1130ab10] + DiffEqParamEstim v2.2.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.11 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.2 [1a297f60] + FillArrays v1.13.0 [f6369f11] + ForwardDiff v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [06bb1623] + PenaltyFunctions v0.3.0 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.27 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.97.0 [c0aeaf25] + SciMLOperators v1.3.1 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.40 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.4 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [cd4c43a9] + Dierckx_jll v0.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... Precompilation completed after 1844.87s ################################################################################ # Testing # Testing DiffEqParamEstim ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_tKREc6/Project.toml` [a134a8b2] BlackBoxOptim v0.6.3 [49dc2e85] Calculus v0.5.2 [bcd4f6db] DelayDiffEq v5.53.1 [39dd38d3] Dierckx v0.5.4 [2b5f629d] DiffEqBase v6.175.0 [1130ab10] DiffEqParamEstim v2.2.0 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [76087f3c] NLopt v1.1.4 [429524aa] Optim v1.12.0 [7f7a1694] Optimization v4.3.0 [3e6eede4] OptimizationBBO v0.4.1 [4e6fcdb7] OptimizationNLopt v0.3.2 [36348300] OptimizationOptimJL v0.4.3 [1dea7af3] OrdinaryDiffEq v6.98.0 [65888b18] ParameterizedFunctions v5.18.0 [06bb1623] PenaltyFunctions v0.3.0 [d236fae5] PreallocationTools v0.4.27 [731186ca] RecursiveArrayTools v3.33.0 [0bca4576] 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[4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Independent variable t should be defined with @independent_variables t. └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/v0QS9/src/utils.jl:99 ┌ Warning: Independent variable t should be defined with @independent_variables t. └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/v0QS9/src/utils.jl:99 ┌ Warning: Independent variable t should be defined with @independent_variables t. └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/v0QS9/src/utils.jl:99 ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = (::L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing})(sol::ODESolution{Float64, 2, Vector{Vector{Float64}}, Nothing, Nothing, Vector{Float64}, Vector{Vector{Vector{Float64}}}, Nothing, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, var"##225"{var"###ParameterizedDiffEqFunction#227", var"###ParameterizedTGradFunction#228", var"###ParameterizedJacobianFunction#229", Nothing, Nothing, System}, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, OrdinaryDiffEqCore.InterpolationData{var"##225"{var"###ParameterizedDiffEqFunction#227", var"###ParameterizedTGradFunction#228", var"###ParameterizedJacobianFunction#229", Nothing, Nothing, System}, Vector{Vector{Float64}}, Vector{Float64}, Vector{Vector{Vector{Float64}}}, Nothing, OrdinaryDiffEqTsit5.Tsit5Cache{Vector{Float64}, Vector{Float64}, Vector{Float64}, typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, Nothing}, SciMLBase.DEStats, Nothing, Nothing, Nothing, Nothing}) at cost_functions.jl:85 └ @ DiffEqParamEstim ~/.julia/packages/DiffEqParamEstim/6z5Ou/src/cost_functions.jl:85 Starting optimization with optimizer DiffEvoOpt{FitPopulation{Float64}, RadiusLimitedSelector, BlackBoxOptim.AdaptiveDiffEvoRandBin{3}, RandomBound{ContinuousRectSearchSpace}} 0.00 secs, 0 evals, 0 steps 9.49 secs, 2 evals, 1 steps, fitness=1326.299961359 18.74 secs, 4 evals, 2 steps, fitness=1326.299961359 27.92 secs, 6 evals, 3 steps, fitness=1326.299961359 36.98 secs, 8 evals, 4 steps, fitness=1326.299961359 46.47 secs, 10 evals, 5 steps, fitness=1326.299961359 55.69 secs, 12 evals, 6 steps, improv/step: 0.167 (last = 1.0000), fitness=744.613813919 65.07 secs, 14 evals, 7 steps, improv/step: 0.286 (last = 1.0000), fitness=744.613813919 74.68 secs, 16 evals, 8 steps, improv/step: 0.250 (last = 0.0000), fitness=67.361952380 83.94 secs, 18 evals, 9 steps, improv/step: 0.333 (last = 1.0000), fitness=67.361952380 93.20 secs, 20 evals, 10 steps, improv/step: 0.300 (last = 0.0000), fitness=67.361952380 102.57 secs, 22 evals, 11 steps, improv/step: 0.273 (last = 0.0000), fitness=67.361952380 112.10 secs, 24 evals, 12 steps, improv/step: 0.250 (last = 0.0000), fitness=67.361952380 120.55 secs, 26 evals, 13 steps, improv/step: 0.308 (last = 1.0000), fitness=67.361952380 127.40 secs, 28 evals, 14 steps, improv/step: 0.286 (last = 0.0000), fitness=67.361952380 136.50 secs, 30 evals, 15 steps, improv/step: 0.333 (last = 1.0000), fitness=67.361952380 145.30 secs, 32 evals, 16 steps, improv/step: 0.312 (last = 0.0000), fitness=67.361952380 154.26 secs, 34 evals, 17 steps, improv/step: 0.353 (last = 1.0000), fitness=61.114991112 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 519 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE8sectionsEv at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE10getSectionEj at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE10getSectionERKNS0_12Elf_Sym_ImplIS5_EENS_8ArrayRefIS8_EENS0_10DataRegionINS3_6detail31packed_endian_specific_integralIjLS4_1ELm1ELm1EEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE10getSectionERKNS0_12Elf_Sym_ImplIS5_EEPKNS0_13Elf_Shdr_ImplIS5_EENS0_10DataRegionINS3_6detail31packed_endian_specific_integralIjLS4_1ELm1ELm1EEEEE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE16getSymbolSectionEPKNS0_12Elf_Sym_ImplIS5_EEPKNS0_13Elf_Shdr_ImplIS5_EE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE16getSymbolSectionENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) _ZNK4llvm6object10SectionRef14containsSymbolENS0_9SymbolRefE at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) get_function_name_and_base at /source/src/debuginfo.cpp:734 [inlined] jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1132 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1164 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1238 ijl_lookup_code_address at /source/src/stackwalk.c:593 lookup at ./stacktraces.jl:108 firstcaller at ./deprecated.jl:157 [inlined] firstcaller at ./deprecated.jl:152 [inlined] macro expansion at ./deprecated.jl:132 [inlined] macro expansion at ./logging.jl:390 [inlined] #depwarn#1054 at ./deprecated.jl:127 depwarn at ./deprecated.jl:121 unknown function (ip: 0x771b9db59049) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 getindex at ./deprecated.jl:104 L2Loss at /home/pkgeval/.julia/packages/DiffEqParamEstim/6z5Ou/src/cost_functions.jl:85 #29 at /home/pkgeval/.julia/packages/DiffEqParamEstim/6z5Ou/src/build_loss_objective.jl:18 [inlined] #29 at /home/pkgeval/.julia/packages/DiffEqParamEstim/6z5Ou/src/build_loss_objective.jl:10 [inlined] OptimizationFunction at /home/pkgeval/.julia/packages/SciMLBase/AjIEA/src/scimlfunctions.jl:4220 [inlined] fitness at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/problem.jl:61 [inlined] fitness at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:150 #update_fitness!#44 at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:26 [inlined] update_fitness! at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:23 [inlined] #update_fitness!#46 at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:45 [inlined] update_fitness! at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:41 [inlined] #update_fitness!#47 at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:51 [inlined] update_fitness! at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:51 [inlined] rank_by_fitness! at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/evaluator.jl:183 step! at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/opt_controller.jl:274 [inlined] run! at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/opt_controller.jl:321 unknown function (ip: 0x771b9db7f445) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 run! at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/opt_controller.jl:470 unknown function (ip: 0x771b9db686d5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #bboptimize#120 at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/bboptimize.jl:93 bboptimize at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/bboptimize.jl:91 [inlined] bboptimize at /home/pkgeval/.julia/packages/BlackBoxOptim/lZtsr/src/bboptimize.jl:91 unknown function (ip: 0x771b9db48019) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 [inlined] macro expansion at /home/pkgeval/.julia/packages/DiffEqParamEstim/6z5Ou/test/runtests.jl:5 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] macro expansion at /home/pkgeval/.julia/packages/DiffEqParamEstim/6z5Ou/test/runtests.jl:4 [inlined] macro expansion at ./timing.jl:279 [inlined] top-level scope at /home/pkgeval/.julia/packages/DiffEqParamEstim/6z5Ou/test/runtests.jl:269 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x771bb847f125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 161.55 secs, 36 evals, 18 steps, improv/step: 0.333 (last = 0.0000), fitness=37.464111542 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x771bb92dc249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== 165.94 secs, 37 evals, 19 steps, improv/step: 0.316 (last = 0.0000) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74802.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x76854f8da790) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x76854f8d3085) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x76854f8d2b70) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x76854f8d2430) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x76854f8ceb29) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x76855070a249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000768543000010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:1915; test ╎ ╎ ╎ 1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty… ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …/condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericConditi… ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1008; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL… , fitness=┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 37.464111542Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000771babc00010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:296; exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:385; eval ╎ 1 @Base/client.jl:494; include(fname::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::… ╎ ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 …stim/test/runtests.jl:269; top-level scope ╎ ╎ 1 @Base/timing.jl:279; macro expansion ╎ ╎ 1 …stim/test/runtests.jl:4; macro expansion ╎ ╎ 1 @Test/src/Test.jl:1577; macro expansion ╎ ╎ ╎ 1 …tim/test/runtests.jl:5; macro expansion ╎ ╎ ╎ 1 @Base/client.jl:494; include ╎ ╎ ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module… ╎ ╎ ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identit… ╎ ╎ ╎ 1 @Base/boot.jl:385; eval ╎ ╎ ╎ ╎ 1 …/src/bboptimize.jl:91; kwcall(::@NamedTuple{SearchRange::V… ╎ ╎ ╎ ╎ 1 …src/bboptimize.jl:91; bboptimize ╎ ╎ ╎ ╎ 1 …src/bboptimize.jl:93; bboptimize(functionOrProblem::Func… ╎ ╎ ╎ ╎ 1 …pt_controller.jl:470; run!(oc::BlackBoxOptim.OptControl… ╎ ╎ ╎ ╎ 1 …pt_controller.jl:321; run!(ctrl::BlackBoxOptim.OptRunC… ╎ ╎ ╎ ╎ ╎ 1 …t_controller.jl:274; step! ╎ ╎ ╎ ╎ ╎ 1 …rc/evaluator.jl:183; rank_by_fitness!(e::BlackBoxOpt… ╎ ╎ ╎ ╎ ╎ 1 …rc/evaluator.jl:51; update_fitness! ╎ ╎ ╎ ╎ ╎ 1 …rc/evaluator.jl:51; #update_fitness!#47 ╎ ╎ ╎ ╎ ╎ 1 …c/evaluator.jl:41; update_fitness! ╎ ╎ ╎ ╎ ╎ ╎ 1 …c/evaluator.jl:45; #update_fitness!#46 ╎ ╎ ╎ ╎ ╎ ╎ 1 …/evaluator.jl:23; update_fitness! ╎ ╎ ╎ ╎ ╎ ╎ 1 …/evaluator.jl:26; #update_fitness!#44 ╎ ╎ ╎ ╎ ╎ ╎ 1 …evaluator.jl:150; fitness(params::Vector{Floa… ╎ ╎ ╎ ╎ ╎ ╎ 1 …c/problem.jl:61; fitness ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …unctions.jl:4220; OptimizationFunction ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …bjective.jl:10; #29 ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …bjective.jl:18; #29 ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …unctions.jl:85; (::L2Loss{Vector{Float64… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …precated.jl:104; getindex(VA::ODESoluti… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …precated.jl:121; depwarn(msg::String, … ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …precated.jl:127; depwarn(msg::String,… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …/logging.jl:390; macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …precated.jl:131; macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/error.jl:114; backtrace() [519] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/DiffEqParamEstim/6z5Ou/test/tests_on_odes/l2loss_test.jl:6 _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE8getEntryINS0_12Elf_Sym_ImplIS5_EEEENS_8ExpectedIPKT_EEjj at /opt/julia/bin/../lib/julia/libLLVM-15jl.so (unknown line) unknown function (ip: (nil)) Allocations: 31381471 (Pool: 31339691; Big: 41780); GC: 44 PkgEval terminated after 2725.29s: test duration exceeded the time limit