Package evaluation of ConstraintTrees on Julia 1.10.9 (96dc2d8c45*) started at 2025-06-06T12:36:11.258 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.2s ################################################################################ # Installation # Installing ConstraintTrees... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [5515826b] + ConstraintTrees v1.9.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [34da2185] + Compat v4.16.0 [5515826b] + ConstraintTrees v1.9.0 [187b0558] + ConstructionBase v1.5.8 [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.4 [bac558e1] + OrderedCollections v1.8.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [2f01184e] + SparseArrays v1.10.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Installation completed after 7.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 224.14s ################################################################################ # Testing # Testing ConstraintTrees Status `/tmp/jl_Zm0S7S/Project.toml` [7d9f7c33] Accessors v0.1.42 ⌅ [61c947e1] Clarabel v0.6.0 [5515826b] ConstraintTrees v1.9.0 [187b0558] ConstructionBase v1.5.8 [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.4 [60bf3e95] GLPK v1.2.1 [4076af6c] JuMP v1.26.0 [e5567a89] SBML v1.6.0 ⌅ [82193955] SCIP v0.11.14 [f43a241f] Downloads v1.6.0 [2f01184e] SparseArrays v1.10.0 [8dfed614] Test Status `/tmp/jl_Zm0S7S/Manifest.toml` [14f7f29c] AMD v0.5.3 [7d9f7c33] Accessors v0.1.42 [6e4b80f9] BenchmarkTools v1.6.0 ⌅ [61c947e1] Clarabel v0.6.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [5515826b] ConstraintTrees v1.9.0 [187b0558] ConstructionBase v1.5.8 [864edb3b] DataStructures v0.18.22 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.4 [e2ba6199] ExprTools v0.1.10 [f6369f11] ForwardDiff v1.0.1 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.17 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [4076af6c] JuMP v1.26.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.40.2 [d8a4904e] MutableArithmetics v1.6.4 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [bfc457fd] QDLDL v0.4.1 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 ⌅ [82193955] SCIP v0.11.14 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [856f2bd8] StructTypes v1.11.0 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.22.1 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e8aa6df9] GLPK_jll v5.0.1+1 [e33a78d0] Hwloc_jll v2.12.1+0 ⌅ [9cc047cb] Ipopt_jll v300.1400.1302+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.600.100+0 [68e3532b] Ncurses_jll v6.5.1+0 ⌅ [656ef2d0] OpenBLAS32_jll v0.3.24+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [05236dd9] Readline_jll v8.2.13+0 [bb12108a] SBML_jll v5.20.1+0 ⌅ [fc9abe76] SCIP_PaPILO_jll v800.100.0+0 ⌅ [e5ac4fe4] SCIP_jll v800.100.0+1 ⌅ [319450e9] SPRAL_jll v2023.8.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [508c9074] bliss_jll v0.77.0+1 ⌅ [28df3c45] boost_jll v1.79.0+3 ⌅ [1317d2d5] oneTBB_jll v2021.12.0+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [781609d7] GMP_jll v6.2.1+6 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition default_pretty_output_io() in module ConstraintTrees at /home/pkgeval/.julia/packages/ConstraintTrees/b4Zp3/src/pretty.jl:65 overwritten in module Main at /home/pkgeval/.julia/packages/ConstraintTrees/b4Zp3/test/runtests.jl:23. Metabolic modeling: Error During Test at /home/pkgeval/.julia/packages/ConstraintTrees/b4Zp3/test/runtests.jl:25 Got exception outside of a @test LoadError: RequestError: Failed to connect to bigg.ucsd.edu port 80 after 30032 ms: Timeout was reached while requesting http://bigg.ucsd.edu/static/models/e_coli_core.xml Stacktrace: [1] (::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:452 [2] with_handle(f::Downloads.var"#9#19"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Curl/Curl.jl:105 [3] #8 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:363 [inlined] [4] arg_write(f::Downloads.var"#8#18"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Bool, Bool}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:134 [5] #7 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:362 [inlined] [6] arg_read @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:361 [8] request @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:328 [inlined] [9] #3 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:259 [inlined] [10] open(f::Downloads.var"#3#4"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:396 [11] open_nolock @ /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:35 [inlined] [12] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.10/ArgTools/src/ArgTools.jl:103 [13] #download#2 @ /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:258 [inlined] [14] download(url::String, output::String) @ Downloads /opt/julia/share/julia/stdlib/v1.10/Downloads/src/Downloads.jl:247 [15] top-level scope @ ~/.julia/packages/ConstraintTrees/b4Zp3/docs/src/1-metabolic-modeling.jl:32 [16] include(fname::String) @ Base.MainInclude ./client.jl:494 [17] macro expansion @ ~/.julia/packages/ConstraintTrees/b4Zp3/test/runtests.jl:26 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [19] macro expansion @ ~/.julia/packages/ConstraintTrees/b4Zp3/test/runtests.jl:26 [inlined] [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined] [21] top-level scope @ ~/.julia/packages/ConstraintTrees/b4Zp3/test/runtests.jl:22 [22] include(fname::String) @ Base.MainInclude ./client.jl:494 [23] top-level scope @ none:6 [24] eval @ ./boot.jl:385 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [26] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/ConstraintTrees/b4Zp3/docs/src/1-metabolic-modeling.jl:32 Test Summary: | Pass Error Total Time ConstraintTrees tests | 121 1 122 5m51.9s Metabolic modeling | 1 1 33.3s Quadratic optimization | 7 7 3m46.8s Mixed-integer optimization | 5 5 58.1s Functional tree processing | 29 29 22.6s JuMP integration improvements | 5 5 1.3s Miscellaneous methods | 74 74 8.6s ERROR: LoadError: Some tests did not pass: 121 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ConstraintTrees/b4Zp3/test/runtests.jl:19 Testing failed after 331.99s ERROR: LoadError: Package ConstraintTrees errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 606.24s: package tests unexpectedly errored